| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF029I04 | Sequence | 649 | 012161 (3) | ref|XP_009590109.1| | 1e-71 | PREDICTED: LRR repeats and ubiquitin-like domain-containing protein At2g30105 [ | 728 | 008559 (3) | ref|XP_011080725.1| | 3e-64 | PREDICTED: LRR repeats and ubiquitin-like domain-containing protein At2g30105 i |
| JMSF029J04 | Sequence | 663 | 012161 (3) | ref|XP_009590109.1| | 2e-72 | PREDICTED: LRR repeats and ubiquitin-like domain-containing protein At2g30105 [ | 735 | 008559 (3) | ref|XP_011080725.1| | 2e-66 | PREDICTED: LRR repeats and ubiquitin-like domain-containing protein At2g30105 i |
| JMSF046I07 | Sequence | 744 | 012161 (3) | ref|XP_009590109.1| | 1e-82 | PREDICTED: LRR repeats and ubiquitin-like domain-containing protein At2g30105 [ | 789 | 008559 (3) | ref|XP_011080725.1| | 3e-62 | PREDICTED: LRR repeats and ubiquitin-like domain-containing protein At2g30105 i |
This contig is upended
. : . : . : . : . : . :
rJMSF046I07+ ACCTCGGTGCAT
____________________________________________________________
consensus ACCTCGGTGCAT
. : . : . : . : . : . :
rJMSF046I07+ TGAGAAGCCTGCAGCAGCTTCATATTGCAAATAACAAGTTAACCTCTCTCCCCACTGAGA
rJMSF029J04+ CACTGAGA
____________________________________________________________
consensus TGAGAAGCCTGCAGCAGCTTCATATTGCAAATAACAAGTTAACCTCTCTCCCCACTGAGA
. : . : . : . : . : . :
rJMSF046I07+ TAGGCC-TTTGACTGCACTTGAGGTTTTGAAAGCCAATAATAACAGATTAAACACCATTC
rJMSF029J04+ TAGGCCTTTTGACTGCACTTGAGGTTTTGAAAGCCAATAATAACAGATTAAACACCATTC
rJMSF029I04+ GACTGCACTTGAGGTTTTGAAAGCCAATAATAACAGATTAAACACCATTC
____________________________________________________________
consensus TAGGCCTTTTGACTGCACTTGAGGTTTTGAAAGCCAATAATAACAGATTAAACACCATTC
. : . : . : . : . : . :
rJMSF046I07+ CAAATAGCATAGGTGGATGTGCTTCTCTTGTTGAGATTGATCTTTCCTGTAATCTTCTGA
rJMSF029J04+ CAAATAGCATAGGTGGATGTGCTTCTCTTGTTGAGATTGATCTTTCCTGTAATCTTCTGA
rJMSF029I04+ CAAATAGCATAGGTGGATGTGCTTCTCTTGTTGAGATTGATCTTTCCTGTAATCTTCTGA
____________________________________________________________
consensus CAAATAGCATAGGTGGATGTGCTTCTCTTGTTGAGATTGATCTTTCCTGTAATCTTCTGA
. : . : . : . : . : . :
rJMSF046I07+ CTGAGCTGCCTGATACGCTTGGCACGCTGAAGGATTTGAAGGCATTGTATCTCAGAAACA
rJMSF029J04+ CTGAGCTGCCTGATACGCTTGGCACGCTGAAGGATTTGAAGGCATTGTATCTCAGAAACA
rJMSF029I04+ CTGAGCTGCCTGATACGCTTGGCACGCTGAAGGATTTGAAGGCATTGTATCTCAGAAACA
____________________________________________________________
consensus CTGAGCTGCCTGATACGCTTGGCACGCTGAAGGATTTGAAGGCATTGTATCTCAGAAACA
. : . : . : . : . : . :
rJMSF046I07+ ACGGTCTTACATCTCTTCCTACTACTATATTCAAATTCTGCACTAAACTCTCAACACTGG
rJMSF029J04+ ACGGTCTTACATCTCTTCCTACTACTATATTCAAATTCTGCACTAAACTCTCAACACTGG
rJMSF029I04+ ACGGTCTTACATCTCTTCCTACTACTATATTCAAATTCTGCACTAAACTCTCAACACTGG
____________________________________________________________
consensus ACGGTCTTACATCTCTTCCTACTACTATATTCAAATTCTGCACTAAACTCTCAACACTGG
. : . : . : . : . : . :
rJMSF046I07+ ATCTCCATGCTACTGAAATAACAGTAGATCATCTACGCCAGTTTGAAGGATGGGATAGTT
rJMSF029J04+ ATCTCCATGCTACTGAAATAACAGTAGATCATCTACGCCAGTTTGAAGGATGGGATAGTT
rJMSF029I04+ ATCTCCATGCTACTGAAATAACAGTAGATCATCTACGCCAGTTTGAAGGATGGGATAGTT
____________________________________________________________
consensus ATCTCCATGCTACTGAAATAACAGTAGATCATCTACGCCAGTTTGAAGGATGGGATAGTT
. : . : . : . : . : . :
rJMSF046I07+ TTGATGAGAGGAGGCGTTTAAAGCATCAAAAGCAGCTGGATTTCCGAGTGTCTAGCTCAG
rJMSF029J04+ TTGATGAGAGGAGGCGTTTAAAGCATCAAAAGCAGCTGGATTTCCGAGTGTCTAGCTCAG
rJMSF029I04+ TTGATGAGAGGAGGCGTTTAAAGCATCAAAAGCAGCTGGATTTCCGAGTGTCTAGCTCAG
____________________________________________________________
consensus TTGATGAGAGGAGGCGTTTAAAGCATCAAAAGCAGCTGGATTTCCGAGTGTCTAGCTCAG
. : . : . : . : . : . :
rJMSF046I07+ GCCAATTTGATGAAGGTGCTGACAGAAAATGAATAGTGCAAAAAAACTCTTGCATGAGTT
rJMSF029J04+ GCCAATTTGATGAAGGTGCTGACAGAAAATGAATAGTGCAAAAAAACTCTTGCATGAGTT
rJMSF029I04+ GCCAATTTGATGAAGGTGCTGACAGAAAATGAATAGTGCAAAAAAACTCTTGCATGAGTT
____________________________________________________________
consensus GCCAATTTGATGAAGGTGCTGACAGAAAATGAATAGTGCAAAAAAACTCTTGCATGAGTT
. : . : . : . : . : . :
rJMSF046I07+ GGCTGTCTGATGATATCTTTGTACAACATCCATCACATTGGCATTCATTCCTGACCCGCT
rJMSF029J04+ GGCTGTCTGATGATATCTTTGTACAACATCCATCACATTGGCATTCATTCCTGACCCGCT
rJMSF029I04+ GGCTGTCTGATGATATCTTTGTACAACATCCATCACATTGGCATTCATTCCTGACCCGCT
____________________________________________________________
consensus GGCTGTCTGATGATATCTTTGTACAACATCCATCACATTGGCATTCATTCCTGACCCGCT
. : . : . : . : . : . :
rJMSF046I07+ ATAGATACAAGTTCAATCCCCTTACCCCAACATTGATAGCAATCTGCAAGCTTCTGTTGC
rJMSF029J04+ ATAGATACAAGTTCAATCCCCTTACCCCAACATTGATAGCAATCTGCAAGCTTCTGTTGC
rJMSF029I04+ ATAGATACAAGTTCAATCCCCTTACCCCAACATTGATAGCAATCTGCAAGCTTCTGTTGC
____________________________________________________________
consensus ATAGATACAAGTTCAATCCCCTTACCCCAACATTGATAGCAATCTGCAAGCTTCTGTTGC
. : . : . : . : . : . :
rJMSF046I07+ ACAAGGAGGGCAAAAATGACAGTATGTAGCTATAATTAAATGAGCTTATTGATTTGTATT
rJMSF029J04+ ACAAGGAGGGCAAAAATGACAGTATGTAGCTATAATTAAATGAGCTTATTGATTTGTATT
rJMSF029I04+ ACAAGGAGGGCAAAAATGACAGTATGTAGCTATAATTAAATGAGCTTATTGATTTGTATT
____________________________________________________________
consensus ACAAGGAGGGCAAAAATGACAGTATGTAGCTATAATTAAATGAGCTTATTGATTTGTATT
. : . : . : . : . : . :
rJMSF046I07+ TGCTATAGAACACCCCATTCCCCAAAGGATAGTTGTTGTTATGATTTTGTGGTTAGCGGT
rJMSF029J04+ TGCTATAGAACACCCCATTCCCCAAAGGATAGTTGTTGTTATGATTTTGTGGTTAGCGGT
rJMSF029I04+ TGCTATAGAACACCCCATTCCCCAAAGGATAGTTGTTGTTATGATTTTGTGGTTAGCGGT
____________________________________________________________
consensus TGCTATAGAACACCCCATTCCCCAAAGGATAGTTGTTGTTATGATTTTGTGGTTAGCGGT
. : . : . : . : . : . :
rJMSF046I07+ ATCACTATATGACTAGAGTTGACAGGTTTAATTACAATTTTTAAAAAAA
rJMSF029J04+ ATCACTATATGACTAGAGTTGACAGGTTTAATTACAATTTTAAAAAAAA
rJMSF029I04+ ATCACTATATGACTAGAGTTGACAGGTTTAATTACAATTTTAAAAAAAATAAAGACATAA
____________________________________________________________
consensus ATCACTATATGACTAGAGTTGACAGGTTTAATTACAATTTTAAAAAAAATAAAGACATAA