Contig 008558:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF001O17Sequence193005233 (5)644008558 (4)gb|AAY89383.1|3e-103starch synthase isoform 2 [Nicotiana langsdorffii x Nicotiana sanderae]
JMSF024I14Sequence629005233 (5)ref|XP_011098635.1|2e-13PREDICTED: granule-bound starch synthase 2, chloroplastic/amyloplastic isoform 768008558 (4)gb|AAY89383.1|2e-134starch synthase isoform 2 [Nicotiana langsdorffii x Nicotiana sanderae]
JMSF028N18Sequence650005233 (5)ref|NP_001274977.1|9e-09granule-bound starch synthase 2, chloroplastic/amyloplastic precursor [Solanum 716008558 (4)gb|AAY89383.1|7e-107starch synthase isoform 2 [Nicotiana langsdorffii x Nicotiana sanderae]
JMSF039M13Sequence649005233 (5)ref|XP_011098635.1|4e-05PREDICTED: granule-bound starch synthase 2, chloroplastic/amyloplastic isoform 872008558 (4)ref|XP_002531856.1|2e-137starch synthase, putative [Ricinus communis] gb|EEF30534.1| starch synthase, put

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF039M13+                                                 GATACGAATGAGTGGAACCCA
                      ____________________________________________________________
consensus                                                    GATACGAATGAGTGGAACCCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF024I14+               GGATGTTCACTTGAAGTCGGATGGTTATGTT-AACTATTCCCTGGAGACA-TGCA
rJMSF039M13+          CTGCTGGATGTTCACTTGAAGTCGGATGGTTATGTTNAACTATTCCCTGGAGACATTGCA
                      ____________________________________________________________
consensus             CTGCTGGATGTTCACTTGAAGTCGGATGGTTATGTTNAACTATTCCCTGGAGACATTGCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF024I14+          GACTGGTAAACCTAAATGCAAAGCAGCACTGCAAAAGGAACTCGGTTTGCCTGTGCGCCC
rJMSF039M13+          GACTGGTAAACCTAAATGCAAAGCAGCACTGCAAAAGGAACTCGGTTTGCCTGTGCGCCC
                      ____________________________________________________________
consensus             GACTGGTAAACCTAAATGCAAAGCAGCACTGCAAAAGGAACTCGGTTTGCCTGTGCGCCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF024I14+          AGATGTCCCGCTGATTGGTTTCATTGGGAGGCTTGATTACCAGAAAGGCGTTGATCTGAT
rJMSF039M13+          AGATGTCCCGCTGATTGGTTTCATTGGGAGGCTTGATTACCAGAAAGGCGTTGATCTGAT
                      ____________________________________________________________
consensus             AGATGTCCCGCTGATTGGTTTCATTGGGAGGCTTGATTACCAGAAAGGCGTTGATCTGAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF024I14+          AGCTGAGGCAATCCCTTGGATGATGGGCGAGGACGTGCAGGTGGTTATGTTGGGCACAGG
rJMSF039M13+          AGCTGAGGCAATCCCTTGGATGATGGGCGAGGACGTGCAGGTGGTTATGTTGGGCACAGG
rJMSF001O17+                             ATGATGGGCGAGGACGTGCAGGTGGTTATGTTGGGCACAGG
rJMSF028N18+              GAGGCAATCCCCTGGATGATGGGCGAGGACGTGCAGGTGGTTATGTTGGGCACAGG
                      ____________________________________________________________
consensus             AGCTGAGGCAATCCCTTGGATGATGGGCGAGGACGTGCAGGTGGTTATGTTGGGCACAGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF024I14+          CAGGCCCGACCTAGAACAATTGCTCAGGCAGTTTGAGTATCAGCACAACGACAAAGTCAG
rJMSF039M13+          CAGGCCCGACCTAGAACAATTGCTCAGGCAGTTTGAGTATCAGCACAACGACAAAGTCAG
rJMSF001O17+          CAGGCCCGACCTAGAACAATTGCTCAGGCAGTTTGAGTATCAGCACAACGACAAAGTCAG
rJMSF028N18+          CAGGCCCGACCTAGAACAATTGCTCAGGCAGTTTGAGTATCAGCACAACGACAAAGTCAG
                      ____________________________________________________________
consensus             CAGGCCCGACCTAGAACAATTGCTCAGGCAGTTTGAGTATCAGCACAACGACAAAGTCAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF024I14+          AGGATGGGTGGGGTTCTCTGTAAAGACTTCACACCGGATAACTGCTGGTGCAGACATTCT
rJMSF039M13+          AGGATGGGTGGGGTTCTCTGTAAAGACTTCACACCGGATAACTGCTGGTGCAGACATTCT
rJMSF001O17+          AGGATGGGTGGGGTTCTCTGTAAAGACTTCACACCGGATAACTGCTGGTGCAGACATTCT
rJMSF028N18+          AGGATGGGTGGGGTTCTCTGTAAAGACTTCACACCGGATAACTGCTGGTGCAGACATTCT
                      ____________________________________________________________
consensus             AGGATGGGTGGGGTTCTCTGTAAAGACTTCACACCGGATAACTGCTGGTGCAGACATTCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF024I14+          GCTTATGCCATCAAGATTTGAGCCTTGTGGACTAAACCAACTGTATGCTATGTCCTATGG
rJMSF039M13+          GCTTATGCCATCAAGATTTGAGCCTTGTGGACTAAACCAACTGTATGCTATGTCCTATGG
rJMSF001O17+          GCTTATGCCATCAAGATTTGAGCCTTGTGGACTAAACCAACTGTATGCTATGTCCTATGG
rJMSF028N18+          GCTTATGCCATCAAGATTTGAGCCTTGTGGACTAAACCAACTGTATGCTATGTCCTATGG
                      ____________________________________________________________
consensus             GCTTATGCCATCAAGATTTGAGCCTTGTGGACTAAACCAACTGTATGCTATGTCCTATGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF024I14+          CACTGTCCCCGTCGTCCATGCTGTGGGTGGGCTACGAGATACAGTCGTACCCTTCGATCC
rJMSF039M13+          CACTGTCCCCGTCGTCCATGCTGTGGGTGGGCTACGAGATACAGTCGTACCCTTCGATCC
rJMSF001O17+          CACTGTCCCCGTCGTCCATGCTGTGGGTGGGCTACGAGATACAGTCGTACCCTTCGATCC
rJMSF028N18+          CACTGTCCCCGTCGTCCATGCTGTGGGTGGGCTACGAGATACAGTCGTACCCTTCGATCC
                      ____________________________________________________________
consensus             CACTGTCCCCGTCGTCCATGCTGTGGGTGGGCTACGAGATACAGTCGTACCCTTCGATCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF024I14+          TTATAATGAGACAGGGCTCGGGTGGACATTCGATAGGGCTGAGGCAGAGCAGCTGATCCA
rJMSF039M13+          TTATAATGAGACAGGGCTCGGGTGGACATTCGATAGGGCTGAGGCAGAGCAGCTGATCCA
rJMSF001O17+          TTATAATGAGACAGGGCTCGGGTGGACATTCGATAGGGCTGAGGCAGAGCAGCTGATCCA
rJMSF028N18+          TTATAATGAGACAGGGCTCGGGTGGACATTCGATAGGGCTGAGGCAGAGCAGCTGATCCA
                      ____________________________________________________________
consensus             TTATAATGAGACAGGGCTCGGGTGGACATTCGATAGGGCTGAGGCAGAGCAGCTGATCCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF024I14+          TGCATTGGGGAATTGCTTGCTGACATATCGTCAGTACAAGAAGAGCTGGGAGGGCCTGCA
rJMSF039M13+          TGCATTGGGGAATTGCTTGCTGACATATCGTCAGTACAAGAAGAGCTGGGAGGGCCTGCA
rJMSF001O17+          TGCATTGGGGAATTGCTTGCTGACATATCGTCAGTACAAGAAGAGCTGGGAGGGCCTGCA
rJMSF028N18+          TGCATTGGGGAATTGCTTGCTGACATATCGTCAGTACAAGAAGAGCTGGGAGGGCCTGCA
                      ____________________________________________________________
consensus             TGCATTGGGGAATTGCTTGCTGACATATCGTCAGTACAAGAAGAGCTGGGAGGGCCTGCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF024I14+          AAAGCGCGGGATGATGCAAGACTTAAGCTGGGATCATGCTGCTCAGAATTATGAAGAAGT
rJMSF039M13+          AAAGCGCGGGATGATGCAAGACTTAAGCTGGGATCATGCTGCTCAGAATTATGAAGAAGT
rJMSF001O17+          AAAGCGCGGGATGATGCAAGACTTAAGCTGGGATCATGCTGCTCAGAATTATGAAGAAGT
rJMSF028N18+          AAAGCGCGGGATGATGCAAGACTTAAGCTGGGATCATGCTGCTCAGAATTATGAAGAAGT
                      ____________________________________________________________
consensus             AAAGCGCGGGATGATGCAAGACTTAAGCTGGGATCATGCTGCTCAGAATTATGAAGAAGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF024I14+          TCTTGTGGCTGCTAAGTATCAGTGGTAAGGCTAAGCCTTTTTTGCATTCAGGAAATAAGA
rJMSF039M13+          TCTTGTGGCTGCTAAGTATCAGTGGTAAGGCTAAGCCTTTTTTGCATTCAGGAAATAAGA
rJMSF001O17+          TCTTGTGGCTGCTAAGTATCAGTGGTAAGGCTAAGCCTTTTTTGCATTCAGGAAATAAGA
rJMSF028N18+          TCTTGTGGCTGCTAAGTATCAGTGGTAAGGCTAAGCCTTTTTTGCATTCAGGAAATAAGA
                      ____________________________________________________________
consensus             TCTTGTGGCTGCTAAGTATCAGTGGTAAGGCTAAGCCTTTTTTGCATTCAGGAAATAAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF024I14+          AGCTGGTATTGTGATTTGTGAATACTGCATGTAGTGTCTGAAATTT              
rJMSF039M13+          AGCTGGTATTGTGATTTGTGAATACTGCATGTAGTGTCTGAAATTTTGAAAACTCAGATG
rJMSF001O17+          AGCTGGTATTGTGATTTGTGAATACTGCATGTAGTGTCTGAAATTTTGAAAACTCAGATG
rJMSF028N18+          AGCTGGTATTGTGATTTGTGAATACTGCATGTAGTGTCTGAAATTTTGAGAACTCAGATG
                      ____________________________________________________________
consensus             AGCTGGTATTGTGATTTGTGAATACTGCATGTAGTGTCTGAAATTTTGAAAACTCAGATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF039M13+          GTAAATAGTACAAGGAAGAAAAAGATATTAACTTAGCAGAAACACACTAAATCTCAGCTT
rJMSF001O17+          GTAAATAGTACAGGGAAGAAAAAGATTTTAACTTAGCAGAAACACACTAAATCTCAGCT 
rJMSF028N18+          GTAAATAGTACAAGGAAGAAAAAGATTTTAACTTAGCAGAAACACACTAAATCTCAGCTT
                      ____________________________________________________________
consensus             GTAAATAGTACAAGGAAGAAAAAGATTTTAACTTAGCAGAAACACACTAAATCTCAGCTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF039M13+          GTATTGGGATA                                                 
rJMSF028N18+          GTATTGGGATAGTGATCTCTCAAAAATTTCAGAAAAGCCATTTTCTCAACACAAATGAAG
                      ____________________________________________________________
consensus             GTATTGGGATAGTGATCTCTCAAAAATTTCAGAAAAGCCATTTTCTCAACACAAATGAAG