| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF024E10 | Sequence | 698 | 023194 | ref|NP_001275389.1| | 1e-40 | ubiquitin-conjugating enzyme E2 27-like [Solanum tuberosum] gb|ABB86282.1| ubiqu | 807 | 008557 (3) | ref|XP_009615553.1| | 9e-64 | PREDICTED: ubiquitin-conjugating enzyme E2 27 [Nicotiana tomentosiformis] ref|XP |
| JMSF028K03 | Sequence | 652 | 010883 (3) | ref|NP_001275389.1| | 6e-41 | ubiquitin-conjugating enzyme E2 27-like [Solanum tuberosum] gb|ABB86282.1| ubiqu | 743 | 008557 (3) | ref|XP_009615553.1| | 1e-65 | PREDICTED: ubiquitin-conjugating enzyme E2 27 [Nicotiana tomentosiformis] ref|XP |
| JMSF052P13 | Sequence | 656 | 010883 (3) | ref|NP_001275389.1| | 6e-41 | ubiquitin-conjugating enzyme E2 27-like [Solanum tuberosum] gb|ABB86282.1| ubiqu | 909 | 008557 (3) | ref|XP_009615553.1| | 8e-65 | PREDICTED: ubiquitin-conjugating enzyme E2 27 [Nicotiana tomentosiformis] ref|XP |
This contig is upended
. : . : . : . : . : . :
rJMSF052P13+ ANGGGGGTCT
____________________________________________________________
consensus ANGGGGGTCT
. : . : . : . : . : . :
rJMSF052P13+ GGACTTCATCTGTTGAGCCGATGGGAGCTGCCTGTACAGTCATGTCTAATTTCTTTCCCT
____________________________________________________________
consensus GGACTTCATCTGTTGAGCCGATGGGAGCTGCCTGTACAGTCATGTCTAATTTCTTTCCCT
. : . : . : . : . : . :
rJMSF024E10+ TGCTCTACCTTTATGGACCTCAAGT
rJMSF052P13+ TGTCATATTTATAATCTCCTGTCTTAATGTGTCTCTGCTCTACCTTTATGGACCTCAAGT
____________________________________________________________
consensus TGTCATATTTATAATCTCCTGTCTTAATGTGTCTCTGCTCTACCTTTATGGACCTCAAGT
. : . : . : . : . : . :
rJMSF024E10+ CAAGAAACACTTTTGGTGTTAATAATCTATTGACATAAAATAGTCAACTTTGCCGTGCGC
rJMSF052P13+ CAAGAAACACTTTTGGTGTTAATAATCTATTGACATAAAATAGTCAACTTTGCCGTGCGC
rJMSF028K03+ AAATAGTCAACTTTGCCGTGCGC
____________________________________________________________
consensus CAAGAAACACTTTTGGTGTTAATAATCTATTGACATAAAATAGTCAACTTTGCCGTGCGC
. : . : . : . : . : . :
rJMSF024E10+ GCTTTGTTTTTGGTATGGAAAACAGGGACTGACAAGCAACAGACGTCAAATGTATTTGAC
rJMSF052P13+ GCTTTGTTTTTGGTATGGAAAACAGGGACTGACAAGCAACAGACGTCAAATGTATTTGAC
rJMSF028K03+ GCTTTGTTTTTGGTATGGAAAACAGGGACTGACAAGCAACAGACGTCAAATGTATTTGAC
____________________________________________________________
consensus GCTTTGTTTTTGGTATGGAAAACAGGGACTGACAAGCAACAGACGTCAAATGTATTTGAC
. : . : . : . : . : . :
rJMSF024E10+ AGCATCTCTGTTTCTAACTCAAACGTATTTTCTTCTTGGTTATTCATGTATTACTGAATA
rJMSF052P13+ AGCATCTCTGTTTCTAACTCAAACGTATTTTCTTCTTGGTTATTCATGTATTACTGAATA
rJMSF028K03+ AGCATCTCTGTTTCTAACTCAAACGTATTTTCTTCTTGGTTATTCATGTATTACTGAATA
____________________________________________________________
consensus AGCATCTCTGTTTCTAACTCAAACGTATTTTCTTCTTGGTTATTCATGTATTACTGAATA
. : . : . : . : . : . :
rJMSF024E10+ AAATATAGTTGCTTGCTATTAAGTTATTCGGGTTCATGGCAAATTATTA-TTTTTTATTT
rJMSF052P13+ AAATATAGTTGCTTGCTATTAAGTTATTCGGGTTCATGGCAAATTATTA-TTTTTTATTT
rJMSF028K03+ AAATATAGTTGCTTGCTATTAAGTTATTCGGGTTCATGGCAAATTATTATTTTTTTATTT
____________________________________________________________
consensus AAATATAGTTGCTTGCTATTAAGTTATTCGGGTTCATGGCAAATTATTA-TTTTTTATTT
. : . : . : . : . : . :
rJMSF024E10+ CATCTTAACATATGATAGTGAAGATGTTCTCCACAAGTGACCTTTCAGAAGTAATTTATT
rJMSF052P13+ CATCTTAACATATGATAGTGAAGATGTTCTCCACAAGTGACTTTTCAGAAGTAATTTATT
rJMSF028K03+ CATCTTAACATATGATAGTGAAGATGTTCTCCACAAGTGACTTTTCAGAAGTAATTTATT
____________________________________________________________
consensus CATCTTAACATATGATAGTGAAGATGTTCTCCACAAGTGACTTTTCAGAAGTAATTTATT
. : . : . : . : . : . :
rJMSF024E10+ CTATGAATGTTTCTGTGCAATTATGCATTGATTGCCATTTGAAGGCACCCTAATATAAGC
rJMSF052P13+ CTATGAATGTTTCTGTGCAATTATGCATTGATTGCCATTTGAAGGCACCCTAATATAAGC
rJMSF028K03+ CTATGAATGTTTCTGTGCAATTATGCATTGATTGCCATTTGAAGGCACCCTAATATAAGC
____________________________________________________________
consensus CTATGAATGTTTCTGTGCAATTATGCATTGATTGCCATTTGAAGGCACCCTAATATAAGC
. : . : . : . : . : . :
rJMSF024E10+ AGTCAAAGTGGTGCGATATGCCTCGATATCCTGAAAGACCAGTGGAGCCCAGCACTTACT
rJMSF052P13+ AGTCAAAGTGGTGCGATATGCCTCGATATCCTGAAAGACCAGTGGAGCCCAGCACTTACT
rJMSF028K03+ AGTCAAAGTGGTGCGATATGCCTCGATATCCTGAAAGACCAGTGGAGCCCAGCACTTACT
____________________________________________________________
consensus AGTCAAAGTGGTGCGATATGCCTCGATATCCTGAAAGACCAGTGGAGCCCAGCACTTACT
. : . : . : . : . : . :
rJMSF024E10+ CTGAAGACAGCTCTCCTTTCTATACAAGCACTGCTCTCTGCTCCTGAACCAGATGATCCA
rJMSF052P13+ CTGAAGACAGCTCTCCTTTCTATACAAGCACTGCTCTCTGCTCCTGAACCAGATGATCCA
rJMSF028K03+ CTGAAGACAGCTCTCCTTTCTATACAAGCACTGCTCTCTGCTCCTGAACCAGATGATCCA
____________________________________________________________
consensus CTGAAGACAGCTCTCCTTTCTATACAAGCACTGCTCTCTGCTCCTGAACCAGATGATCCA
. : . : . : . : . : . :
rJMSF024E10+ CAAGATGCAGTGGTAGCACAACAGTATCTCAGAGAGTACCAGACCTTTCTTGGCACAGCT
rJMSF052P13+ CAAGATGCAGTGGTAGCACAACAGTATCTCAGAGAGTACCAGACCTTTCTTGGCACAGCT
rJMSF028K03+ CAAGATGCAGTGGTAGCACAACAGTATCTCAGAGAGTACCAGACCTTTCTTGGCACAGCT
____________________________________________________________
consensus CAAGATGCAGTGGTAGCACAACAGTATCTCAGAGAGTACCAGACCTTTCTTGGCACAGCT
. : . : . : . : . : . :
rJMSF024E10+ CGGTACTGGACAGAAGCTTTTGCCAAACCATCTCTCGGTGTTGATGAAAAGGTATAGAAA
rJMSF052P13+ CGGTACTGGACAGAAGCTTTTGCCAAACCATCTCTCGGTGTTGATGAAAAGGTACAGAAA
rJMSF028K03+ CGGTACTGGACAGAAGCTTTTGCCAAACCATCTCTCGGTGTTGATGAAAAGGTACAGAAA
____________________________________________________________
consensus CGGTACTGGACAGAAGCTTTTGCCAAACCATCTCTCGGTGTTGATGAAAAGGTACAGAAA
. : . : . : . : . : . :
rJMSF024E10+ CTTGTGGAGATGGGTTTCCCTGAAGCGCAGGTGAGGAGTACACTGGAACTTGTTGGCTGG
rJMSF052P13+ CTTGTGGAGATGGGTTTCCCTGAAGCGCAGGTGAGGAGTACACTGGAACTTGTTGGCTGG
rJMSF028K03+ CTTGTGGAGATGGGTTTCCCTGAAGCGCAGGTGAGGAGTACACTGGAACTTGTTGGCTGG
____________________________________________________________
consensus CTTGTGGAGATGGGTTTCCCTGAAGCGCAGGTGAGGAGTACACTGGAACTTGTTGGCTGG
. : . : . : . : . : . :
rJMSF024E10+ GATGAAAATGCTGCTCTTGAAAGGCTTTGCTCCTCCGCCTAGTGCCAGCTGCAACATTTG
rJMSF052P13+ GATGAAAATGCTGCTCTTGAAAGGCTTTGCTCCTCCGCCTAGTGCCAGCTGCAACATTTG
rJMSF028K03+ GATGAAAATGCTGCTCTTGAAAGGCTTTGCTCCTCCGCCTAGTGCCAGCTGCAACATTTG
____________________________________________________________
consensus GATGAAAATGCTGCTCTTGAAAGGCTTTGCTCCTCCGCCTAGTGCCAGCTGCAACATTTG
. : . : . : . : . : . :
rJMSF024E10+ TTTTTGACGAGGGTGATGATGATGATTCTATGCTTTCCTGGGATGCCCCGAATATGATC
rJMSF052P13+ TTTTTGACGAGGGTGATGATGATGATTCTATGCTTTCCTGGGATGCCCCGAATATGATCC
rJMSF028K03+ TTTTTGACGAGGGTGATGATGATGATTCTATGCTTTCCTGGGATGCCCCGAATATGATCC
____________________________________________________________
consensus TTTTTGACGAGGGTGATGATGATGATTCTATGCTTTCCTGGGATGCCCCGAATATGATCC