Contig 008555:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMSF028C24-                                                                      G
                      ____________________________________________________________
consensus                                                                        G
 
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JMSF028C24-           ATGAGGATGAAGGAGGAGTAACCNTATACCAAGTTGCAAAGTTTGGTGAAGATCATAAAG
                      ____________________________________________________________
consensus             ATGAGGATGAAGGAGGAGTAACCNTATACCAAGTTGCAAAGTTTGGTGAAGATCATAAAG
 
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JMSF028C24-           CTTACTGCGTTAGATTTAATGTTCTTGAGATGAAAGCAACATGCAGCTGTCANATGTTTG
                      ____________________________________________________________
consensus             CTTACTGCGTTAGATTTAATGTTCTTGAGATGAAAGCAACATGCAGCTGTCANATGTTTG
 
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JMSF028C24-           AGTTCTCAGGTCTTCTTTGCAGGCATGTATTGGCAGTATTCAGAGTGACAAATGTTCTTA
rJMSF019E04+                       TCTTTGCAGGCATGTATTGGCAGTATTCAGAGTGACAAATGTTCTTA
                      ____________________________________________________________
consensus             AGTTCTCAGGTCTTCTTTGCAGGCATGTATTGGCAGTATTCAGAGTGACAAATGTTCTTA
 
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JMSF028C24-           CTCTTCCCTCTCATTACATTTTGAAGCGATGGACAAGGAATGCGAAGAGTACTGTTACAC
rJMSF019E04+          CTCTTCCCTCTCATTACATTTTGAAGCGATGGACAAGGAATGCGAAGAGTACTGTTACAC
rJMSF013C07+                                  AGCGATGGACAAGGAATGCGAAGAGTACTGTTACAC
                      ____________________________________________________________
consensus             CTCTTCCCTCTCATTACATTTTGAAGCGATGGACAAGGAATGCGAAGAGTACTGTTACAC
 
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JMSF028C24-           TTGAGGAACGTGTTGCTGATGCATTCAGTGGCTATTTGGAATCACATACTGTTCGATATA
rJMSF019E04+          TTGAGGAACGTGTTGCTGATGCATTCAGTGGCTATTTGGAATCNCATACTGTTCGATATA
rJMSF013C07+          NTGAGGAACGTGTTGCTGATGCATTCAGTGGCTATTNGGAATCACATACTGTTCGATATA
rJMSF028C24+                                                      CATACTGTTCGATATA
                      ____________________________________________________________
consensus             TTGAGGAACGTGTTGCTGATGCATTCAGTGGCTATTTGGAATCACATACTGTTCGATATA
 
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JMSF028C24-           ATATGTTGCGGCATGAAGCTTTTAAGTTTGTGGAAGATGGGGCAGAATCAGTTTCCTCTT
rJMSF019E04+          ATATGTTGCGGCNTGAAGCTTTTAAGTTTGTGGAAGATGGGGCNGAATCAGTTTCCTCTT
rJMSF013C07+          ATATGTTGCGGCATGAAGCTTTTAAGTTTGTGGAAGATGGGGCAGAATCAGTTTCCTCTT
rJMSF028C24+          ATATGNTGCGGCATGAAGCTTTTAAGTTTGTGGAAGATGGGGCAGAATCAGTTTCCTCTT
                      ____________________________________________________________
consensus             ATATGTTGCGGCATGAAGCTTTTAAGTTTGTGGAAGATGGGGCAGAATCAGTTTCCTCTT
 
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JMSF028C24-           ATGTCATAGCAATGGCTGCTTTAGGTGAGGCTTCAAAAAAAGTTTCTCTAGCTGCTAAAC
rJMSF019E04+          ATGTCATAGCAATGGCTGCTTTAGGTGAGGCTTCAAAAAAAGTTTCTCTAGCTGCTAAAC
rJMSF013C07+          ATGTCATAGCAATGGCTGCTTTAGGTGAGGCTTC-AAAAAAGTTTCTCTAGCTGCTAAAC
rJMSF028C24+          ATGTCATAGCAATGGCTGCNTTAGGTGAGGCTTCAAAAAAAGTTTCTCTAGCTGCTAAAC
                      ____________________________________________________________
consensus             ATGTCATAGCAATGGCTGCTTTAGGTGAGGCTTCAAAAAAAGTTTCTCTAGCTGCTAAAC
 
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JMSF028C24-           ATGATGGGAAGATCTCCTTGTTGAATGGATGGAACCAAGATGACTCAATCTCTGATGGTA
rJMSF019E04+          NTGATGGGAAGATCTCCTTGTTGAATGGATGGAACCNAGATGACTCAATCTCTGATGGTA
rJMSF013C07+          ATGATGGGAAGATCTCCTTGTTGAATGGATGGAACCAAGATGACTCAATCTCTGATGGTA
rJMSF028C24+          ATGATGGGAAGATCTCCTTGTTGAATGGATGGAACCAAGATGACTCAATCTCTGATGGTA
                      ____________________________________________________________
consensus             ATGATGGGAAGATCTCCTTGTTGAATGGATGGAACCAAGATGACTCAATCTCTGATGGTA
 
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JMSF028C24-           TCCAGGAGAATCTGAACATTGAGGATCAGCAAGGAACATTCACAAAGCTACTCTCTGAGG
rJMSF019E04+          TCCNGGAGAATNTGAACNTTGAGGATCAGCAAGGAACNTTCNCAAAGCTACTCTNTGAGG
rJMSF013C07+          TCCAGGAGAATCTGAACATTGAGGATCAGCAAGGAACATTCACAAAGCTACTCTCTGAGG
rJMSF028C24+          TCCAGGAGAATCTGAACATTGAGGATCAGCAAGGAACATTCACAAAGCTACTCTCTGAGG
                      ____________________________________________________________
consensus             TCCAGGAGAATCTGAACATTGAGGATCAGCAAGGAACATTCACAAAGCTACTCTCTGAGG
 
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JMSF028C24-           ATGATGTGNACAGGGAGATCCATGAACTTACTTGTGAATTANACTGCGCCAATAGAAGAT
rJMSF019E04+          ATGATGTGGACNGGAAGATCCNTGAACTTACTTGTGAATTAGACTGCGCCNATAGAAGAT
rJMSF013C07+          ATGATGTGGACAGGAAGATCCATGAACTTACTTGTGAATTAGACTGCGCCAATAGAAGAT
rJMSF028C24+          ATGATGTGGACAGGGAGATCCATGAACTTACTTGTGAATTAGACTGCGCCAATAGAAGAT
                      ____________________________________________________________
consensus             ATGATGTGGACAGGGAGATCCATGAACTTACTTGTGAATTAGACTGCGCCAATAGAAGAT
 
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JMSF028C24-           GTGAAGNTTACCGTGTAAACCTCCNTTCAGTTTTGAAGGATATA                
rJMSF019E04+          GTGAAGTTTACCGTGTAAACCTCCTTTCAGTTTTGAAGGATATAGAAGNCCNTAAACNGC
rJMSF013C07+          GTGAAGTTTACCGTGTAAACCTCCTTTCAGTTTTGAAGGATATAGAAGACCATAAACAGC
rJMSF028C24+          GTGAAGTTTACCGTGTAAACCTCCTTTCAGTTTTGAAGGATATAGAAGACCATAAACAGC
                      ____________________________________________________________
consensus             GTGAAGTTTACCGTGTAAACCTCCTTTCAGTTTTGAAGGATATAGAAGACCATAAACAGC
 
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rJMSF019E04+          AATTGTCNATAAAGGTTCAAAATATAAAGATCNGCNTGAAGGATGATCTCTGAAGATTTA
rJMSF013C07+          AATTGTCAATAAAGGTTCAAAATATAAAGATCAGCATGAAGGATGATCTCTGAAGATTTA
rJMSF028C24+          AATTGTCAATAAAGGTTCAAAATATAAAGATCAGCNTGAAGGATGATCTCTGAAGATTTA
                      ____________________________________________________________
consensus             AATTGTCAATAAAGGTTCAAAATATAAAGATCAGCATGAAGGATGATCTCTGAAGATTTA
 
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rJMSF019E04+          TATCTTTTTGTATAGATTTTTTTTTTATTTTTATTTTTTTTTATTTTATTTTATTATTAT
rJMSF013C07+          TATCTTTTTGTATAGA-TTTTTTTTTATTTTTATTTTTTTTTATTTTATTTTATTATTA-
rJMSF028C24+          TATCTTTTTGTATAGA-TTTTTTTTTATTTTTATTTTTTTTTATTTTATTTTATTATTAT
                      ____________________________________________________________
consensus             TATCTTTTTGTATAGA-TTTTTTTTTATTTTTATTTTTTTTTATTTTATTTTATTATTAT
 
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rJMSF019E04+          TTTTTTTTGAGTAGGCAGGCATTTGTAGGTAAACATATT                     
rJMSF013C07+          TTTTTTTTGAGTAGGCAGGCATTTGTAGGTAAACATATTTGTAGCTTCAACTTTTACATA
rJMSF028C24+          TTTTTTTTGAGTAGGCAGGCATTTGTAGGTAAACATATTTGTAGCTTCAACTTTTACATA
                      ____________________________________________________________
consensus             TTTTTTTTGAGTAGGCAGGCATTTGTAGGTAAACATATTTGTAGCTTCAACTTTTACATA
 
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rJMSF013C07+          GATATCTTGATGACTAGTTAGTAATTGAATCTCTTTTGTGAGGT                
rJMSF028C24+          GATATCTTGATGACTAGTTAGTAATTGAATCTCTTTTGTGAGGTATAAAAATGGTAATGT
                      ____________________________________________________________
consensus             GATATCTTGATGACTAGTTAGTAATTGAATCTCTTTTGTGAGGTATAAAAATGGTAATGT
 
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rJMSF028C24+          GGCACCATGCCAAGTTTTTTCTGTGGCTGGCTGGTCTCTGTAGTTGGGTGTCAAAGGAAG
                      ____________________________________________________________
consensus             GGCACCATGCCAAGTTTTTTCTGTGGCTGGCTGGTCTCTGTAGTTGGGTGTCAAAGGAAG