Contig 008552:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF027M19Sequence610008552 (2)ref|XP_009764853.1|182PREDICTED: uncharacterized protein LOC104216501 [Nicotiana sylvestris]714008552 (2)ref|XP_011034438.1|284PREDICTED: uncharacterized protein LOC105132565 [Populus euphratica]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF027M19-                                                   GGGCGTAGTCATGAGACTGA
                      ____________________________________________________________
consensus                                                     GGGCGTAGTCATGAGACTGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF027M19-           TTGCCGGTTTGTCTTCTCCGGCGACCTACTCCGGTCGGGTATTCGCTTACCCAAACCACA
                      ____________________________________________________________
consensus             TTGCCGGTTTGTCTTCTCCGGCGACCTACTCCGGTCGGGTATTCGCTTACCCAAACCACA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF027M19-           GAACGGCGTCGTATTTCCGGAATCCATCTTCATCCTCCGCTTCCTTTTTCAGACTATATG
                      ____________________________________________________________
consensus             GAACGGCGTCGTATTTCCGGAATCCATCTTCATCCTCCGCTTCCTTTTTCAGACTATATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF027M19-           ATTCCTCCAAACCGTCACGCGTCTCCGTATCTGCTTCCACATCGAAATCTTCGCCGACGG
                      ____________________________________________________________
consensus             ATTCCTCCAAACCGTCACGCGTCTCCGTATCTGCTTCCACATCGAAATCTTCGCCGACGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF027M19-           TTGTTGGCGGAGACAGCGTCGAAACGTCGACGTATCAACAATCGGAGAACACCAGCGTTT
                      ____________________________________________________________
consensus             TTGTTGGCGGAGACAGCGTCGAAACGTCGACGTATCAACAATCGGAGAACACCAGCGTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF027M19-           CTCCAAAGTCGCAGGATGGTTCACTGAACACGCAAGTGGGAATTCCCACCATTTCTCGGA
rJMSF027M19+                AGTCGCAGGATGGTTCACTGAACACGCAAGTGGGAATTCCCACCATTTCTCGGA
                      ____________________________________________________________
consensus             CTCCAAAGTCGCAGGATGGTTCACTGAACACGCAAGTGGGAATTCCCACCATTTCTCGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF027M19-           GCTTCATCTCTGCTCCCAAATTGAGCTTAAGCGACCAAGCTTTCTTCCTCTTTTCCTTCA
rJMSF027M19+          GCTTCATCTCTGCTCCCAAATTGAGCTTAAGCGACCAAGCTTTCTTCCTCTTTTCCTTCA
                      ____________________________________________________________
consensus             GCTTCATCTCTGCTCCCAAATTGAGCTTAAGCGACCAAGCTTTCTTCCTCTTTTCCTTCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF027M19-           TCGCTCTCACAACTTCTGTGGCGTTTACGAGCCTGGTAATTGCAGCTGTACCAACGCTAT
rJMSF027M19+          TCGCTCTCACAACTTCTGTGGCGTTTACGAGCCTGGTAATTGCAGCTGTACCAACGCTAT
                      ____________________________________________________________
consensus             TCGCTCTCACAACTTCTGTGGCGTTTACGAGCCTGGTAATTGCAGCTGTACCAACGCTAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF027M19-           TTGCGATGCGAAGAGCAGCAATTTCTCTTTCAAAGTTGGCTGACACTGCTCGTGAGGAGC
rJMSF027M19+          TTGCGATGCGAAGAGCAGCAATTTCTCTTTCAAAGTTGGCTGACACTGCTCGTGAGGAGC
                      ____________________________________________________________
consensus             TTGCGATGCGAAGAGCAGCAATTTCTCTTTCAAAGTTGGCTGACACTGCTCGTGAGGAGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF027M19-           TTCCTAGTACAATGGCTGCAATTAGGCTTTCTGGGATGGAGATCAGTGACCTTACTCTAG
rJMSF027M19+          TTCCTAGTACAATGGCTGCAATTAGGCTTTCTGGGATGGAGATCAGTGACCTTACTCTAG
                      ____________________________________________________________
consensus             TTCCTAGTACAATGGCTGCAATTAGGCTTTCTGGGATGGAGATCAGTGACCTTACTCTAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF027M19-           AATTGAGTGATCTAAGCAAAGAGATTGCAGACGGTGTCAGCAAATCTGCT          
rJMSF027M19+          AATTGAGTGATCTAAGCAAAGAGATTGCAGACGGTGTCAGCAAATCTGCTCAAGCTGTGC
                      ____________________________________________________________
consensus             AATTGAGTGATCTAAGCAAAGAGATTGCAGACGGTGTCAGCAAATCTGCTCAAGCTGTGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF027M19+          AAGCGGCAGAAGCTGGGGTGAGACAAATAGGTTCCCTTGCCCACCAGCGAACAATGACAA
                      ____________________________________________________________
consensus             AAGCGGCAGAAGCTGGGGTGAGACAAATAGGTTCCCTTGCCCACCAGCGAACAATGACAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF027M19+          TGATCGAGGAGAGAGCAAGCCTGCCAACCATATCTTTGCAGCCAGTTGTTGCTGGGGCAG
                      ____________________________________________________________
consensus             TGATCGAGGAGAGAGCAAGCCTGCCAACCATATCTTTGCAGCCAGTTGTTGCTGGGGCAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF027M19+          CCAAGAAGACTTCTCACGCTGTTGGCCAAGCCACGAAAACATTACTGAATATGATCTCTC
                      ____________________________________________________________
consensus             CCAAGAAGACTTCTCACGCTGTTGGCCAAGCCACGAAAACATTACTGAATATGATCTCTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF027M19+          GGTCTTCGAACAGTGAAGATTGAAGGACCAGAATGATGACGGCTCAGGATTCAATAACAC
                      ____________________________________________________________
consensus             GGTCTTCGAACAGTGAAGATTGAAGGACCAGAATGATGACGGCTCAGGATTCAATAACAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF027M19+          TGCCACTGCCCTGTTTTCTTCCATGCGGAAATCAAATTAAAGCGCACTGTAATAACTGGT
                      ____________________________________________________________
consensus             TGCCACTGCCCTGTTTTCTTCCATGCGGAAATCAAATTAAAGCGCACTGTAATAACTGGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF027M19+          AAATAGACATGCGTTAGATAAATGAATACCCAACCTTAACATAAATACATAAGGTTTTGT
                      ____________________________________________________________
consensus             AAATAGACATGCGTTAGATAAATGAATACCCAACCTTAACATAAATACATAAGGTTTTGT