| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF018A07 | Sequence | 477 | 008551 (6) | ref|XP_007048788.1| | 2e-48 | Nucleus, subunit A, putative isoform 2 [Theobroma cacao] gb|EOX92945.1| Nucleus, | 755 | 008551 (6) | ref|XP_009603855.1| | 236 | PREDICTED: uncharacterized protein LOC104098749 [Nicotiana tomentosiformis] |
| JMSF002O06 | Sequence | 297 | 008551 (6) | 761 | 008551 (6) | ref|XP_009603855.1| | 186 | PREDICTED: uncharacterized protein LOC104098749 [Nicotiana tomentosiformis] | |||
| JMSF027F18 | Sequence | 635 | 008551 (6) | ref|XP_007048788.1| | 2e-68 | Nucleus, subunit A, putative isoform 2 [Theobroma cacao] gb|EOX92945.1| Nucleus, | 763 | 008551 (6) | ref|XP_009603855.1| | 168 | PREDICTED: uncharacterized protein LOC104098749 [Nicotiana tomentosiformis] |
This contig is upended
. : . : . : . : . : . :
JMSF002O06- GCCCGTTCCCCGTTTCCGTATCTACTATCAA
____________________________________________________________
consensus GCCCGTTCCCCGTTTCCGTATCTACTATCAA
. : . : . : . : . : . :
JMSF002O06- ATATTGATTATATCATCTTCGTCGTCACACCGAACAACAGTTCTATTTATGTTCTGCAAT
JMFF018A07- GTTCTATTTATGTTCTGCAAT
JMSF027F18- GTTCTATTTATGTTCTGCAAT
____________________________________________________________
consensus ATATTGATTATATCATCTTCGTCGTCACACCGAACAACAGTTCTATTTATGTTCTGCAAT
. : . : . : . : . : . :
JMSF002O06- TTCCCTATGTCTTTCAAGCTTGCCAATTCTATGTTTCTTCTTTCGATTTTTGAATTCTGA
JMFF018A07- TTCCCTATGTCTTTCAAGCTTGCCAATTCTATGTTTCTTCTTTCGATTTTTGAATTCTGA
JMSF027F18- TTCCCTATGTCTTTCAAGCTTGCCAATTCTATGTTTCTTCTTTCGATTTTTGAATTCTGA
____________________________________________________________
consensus TTCCCTATGTCTTTCAAGCTTGCCAATTCTATGTTTCTTCTTTCGATTTTTGAATTCTGA
. : . : . : . : . : . :
JMSF002O06- TTTATCAGCCCGCTGGTTTCCTGCTCCGATCACCGTCTGTGTTAGTGGAGAAAACAGATC
JMFF018A07- TTTATCAGCCCGCTGGTTTCCTGCTCCGATCACCGTCTGTGTTAGTGGAGAAAACAGATC
JMSF027F18- TTTATCAGCCCGCTGGTTTCCTGCTCCGATCACCGTCTGTGTTAGTGGAGAAAACAGATC
____________________________________________________________
consensus TTTATCAGCCCGCTGGTTTCCTGCTCCGATCACCGTCTGTGTTAGTGGAGAAAACAGATC
. : . : . : . : . : . :
JMSF002O06- GGAGCACAGAATGAGAAGTGCTGTAGGGAATCGTAAAGCTCCTTCCCTTGTGGATTTGTG
JMFF018A07- GGAGCACAGAATGAGAAGTGCTGTAGGGAATCGTAAAGCTCCTTCCCTTGTGGATTTGTG
JMSF027F18- GGAGCACAGAATGAGAAGTGCTGTAGGGAATCGTAAAGCTCCTTCCCTTGTGGATTTGTG
____________________________________________________________
consensus GGAGCACAGAATGAGAAGTGCTGTAGGGAATCGTAAAGCTCCTTCCCTTGTGGATTTGTG
. : . : . : . : . : . :
JMSF002O06- CGTTCAGGTTGCAATAGATCATGTTA
JMFF018A07- CGTTCAGGTTGCAATAGATCATGTTAGATACATTGGGGATGTTGGTGCAACAGACTTTCA
JMSF027F18- CGTTCAGGTTGCAATAGATCATGTTAGATACATTGGGGATGTTGGTGCAACAGACTTTCA
rJMFF018A07+ CAATAGATCATGTTAGATACATGGGGGATGTTGGTGCAACAGACTTTCA
____________________________________________________________
consensus CGTTCAGGTTGCAATAGATCATGTTAGATACATTGGGGATGTTGGTGCAACAGACTTTCA
. : . : . : . : . : . :
JMFF018A07- TCTTCTTGAGCGCTTTCTACCTCACTGTACTGTTGACCAGTTGGCACTCATTGAGAAGTC
JMSF027F18- TCTTCTTGAGCGCTTTCTACCTCACTGTACTGTTGACCAGTTGGCACTCATTGAGAAGTC
rJMFF018A07+ TCTTNTTGAGCGCTTTCTACCTCACTGTACTGTTGACCAGTTGGCACTCATTGAGAAGTC
rJMSF002O06+ TTGAGCGCTTTCTACCTCACTGTACTG-TGACCAGNTGGCACTCATTGAGAAGTC
____________________________________________________________
consensus TCTTCTTGAGCGCTTTCTACCTCACTGTACTGTTGACCAGTTGGCACTCATTGAGAAGTC
. : . : . : . : . : . :
JMFF018A07- AACACAAGGAAGAGATCTTAGCCCTGTGACTGATAAAATCTGGAAGCAATTTTATGAGCG
JMSF027F18- AACACAAGGAAGAGATCTTAGCCCTGTGACTGATAAAATCTGGAAGCAATTTTATGAGCG
rJMFF018A07+ AACACAAGGAAGAGATCTTAGCCCTGTGACTGATAAAATCTGGAAGCAATTTTATGAGCG
rJMSF002O06+ AACACAAGGAAGAGATCTTAGCCCTGTGACTGATAAAATCTGGAAGCAATTTTATGAGCG
rJMSF027F18+ ATCTTAGCCCTGTGACTGATAAAATCTGGAAGCAATTTTATGAGCG
____________________________________________________________
consensus AACACAAGGAAGAGATCTTAGCCCTGTGACTGATAAAATCTGGAAGCAATTTTATGAGCG
. : . : . : . : . : . :
JMFF018A07- GGAATTTGGTAAAAAGAGCGCCAGTCTGGTTATTGAGAGAATGAAGCAGAAGAAAGTAAC
JMSF027F18- GGAATTTGGTAAAAAGAGCGCCAGTCTGGTTATTGAGAGAATGAAGCAGAAGAAAGTAAC
rJMFF018A07+ GGAATTTGGTAAAAAGAGCGCCAGTCTGGTTATTGAGAGAATGAAGCAGAAGAAAGTAAC
rJMSF002O06+ GGAATTTGGTAAAAAGAGCGCCAGTCTGGTTATTGAGAGAATGAAGCAGAAGAAAGTAAC
rJMSF027F18+ GGAATTTGGTAAAAAGAGCGCCAGTCTGGTTATTGAGAGAATGAAGCAGAAGAAAGTAAC
____________________________________________________________
consensus GGAATTTGGTAAAAAGAGCGCCAGTCTGGTTATTGAGAGAATGAAGCAGAAGAAAGTAAC
. : . : . : . : . : . :
JMFF018A07- TTTTAAGTGGAATCAATTGTATGAGGCAAAGTTGAA
JMSF027F18- TTTTAAGTGGAATCAATTGTATGAGGCAAAGTTGAAGGAGGTTGAGGAAACCCAACAAAA
rJMFF018A07+ TTTTAAGTGGAATCAATTGTATGAGGCAAAGTTGAAGGAGGTTGAGGAAACCCAACAAAA
rJMSF002O06+ TTTTAAGTGGAATCAATTGTATGAGGCAAAGTTGAAGGAGGTTGAGGAAACCCAACAAAA
rJMSF027F18+ TTTTAAGTGGAATCAATTGTATGAGGCAAAGTTGAAGGAGGTTGAGGAAACCCAACAAAA
____________________________________________________________
consensus TTTTAAGTGGAATCAATTGTATGAGGCAAAGTTGAAGGAGGTTGAGGAAACCCAACAAAA
. : . : . : . : . : . :
JMSF027F18- GTCCTTTGACAGAATCAGGGATCTATACAAAAAACACGATGCTGAGAAACAAAGCCGGCA
rJMFF018A07+ GTCCTTTGACAGAATCAGGGATCTATACAAAAAACACGATGCTGAGAAACAAAGCCGGCA
rJMSF002O06+ GTCCTTTGACAGAATCAGGGATCTATACAAAAAACACGATGCTGAGAAACAAAGCCGGCA
rJMSF027F18+ GTCCTTTGACAGAATCAGGGATCTATACAAAAAACACGATGCTGAGAAACAAAGCCGGCA
____________________________________________________________
consensus GTCCTTTGACAGAATCAGGGATCTATACAAAAAACACGATGCTGAGAAACAAAGCCGGCA
. : . : . : . : . : . :
JMSF027F18- AATTAAGCTCTGCACAAAGGTTCCACCTTCTAGCAGTAAAAGAAGCTTTTATGGAGGCAG
rJMFF018A07+ AATTAAGCTCTGCACAAAGGTTCCACCTTCTAGCAGTAAAAGAAGCTTTTATGGAGGCAG
rJMSF002O06+ AATTAAGCTCTGCACAAAGGTTCCACCTTCTAGCAGTAAAAGAAGCTTTTATGGAGGCAG
rJMSF027F18+ AATTAAGCTCTGCACAAAGGTTCCACCTTCTAGCAGTAAAAGAAGCTTTTATGGAGGCAG
____________________________________________________________
consensus AATTAAGCTCTGCACAAAGGTTCCACCTTCTAGCAGTAAAAGAAGCTTTTATGGAGGCAG
. : . : . : . : . : . :
JMSF027F18- TAGCAATATTTA
rJMFF018A07+ TAGCAATATTTACAACACAAAGAGTACTGTGATGAAGAAAGCAAAAATGGATTTCTTAAG
rJMSF002O06+ TAGCAATATTTACAACACAAAGAGTACTGTGATGAAGAAAGCAAAAATGGATTTCTTAAG
rJMSF027F18+ TAGCAATATTTACAACACAAAGAGTACTGTGATGAAGAAAGCAAAAATGGATTTCTTAAG
____________________________________________________________
consensus TAGCAATATTTACAACACAAAGAGTACTGTGATGAAGAAAGCAAAAATGGATTTCTTAAG
. : . : . : . : . : . :
rJMFF018A07+ AAGTCCAGAGGTTAAAAATTTAGCTGCCATAAAGAATAAGGCTGTGCAGAGAACAAATAG
rJMSF002O06+ AAGTCCAGAGGTTAAAAATTTAGCTGCCATAAAGAATAAGGCTGTGCAGAGAACAAATAG
rJMSF027F18+ AAGTCCAGAGGTTAAAAATTTAGCTGCCATAAAGAATAAGGCTGTGCAGAGAACAAATAG
____________________________________________________________
consensus AAGTCCAGAGGTTAAAAATTTAGCTGCCATAAAGAATAAGGCTGTGCAGAGAACAAATAG
. : . : . : . : . : . :
rJMFF018A07+ CAGTGTAAGTGTTTCCTCCCCAAAGAAACCAGGTGGACCTTCTGCGCTGGCTGCTTCTTC
rJMSF002O06+ ---TGTAAGTGTTTCCTCCCCAAAGAAACCAGGTGGACCTTCTGCGCTGGCTGCTTCTTC
rJMSF027F18+ ---TGTAAGTGTTTCCTCCCCAAAGAAACCAGGTGGACCTTCTGCGCTGGCTGCTTCTTC
____________________________________________________________
consensus ---TGTAAGTGTTTCCTCCCCAAAGAAACCAGGTGGACCTTCTGCGCTGGCTGCTTCTTC
. : . : . : . : . : . :
rJMFF018A07+ AAGACCCAAACCTATGAATCCGCCAATGAAGAGATTCTAGAGCTCCTGGAGTTAATGTTG
rJMSF002O06+ AAGACCCAAACCTATGAATCCGCCAATGAAGAGATTCTAGAGCTCCTGGAGTTAATGTTG
rJMSF027F18+ AAGACCCAAACCTATGAATCCGCCAATGAAGAGATTCTAGAGCTCCTGGAGTTAATGTTG
____________________________________________________________
consensus AAGACCCAAACCTATGAATCCGCCAATGAAGAGATTCTAGAGCTCCTGGAGTTAATGTTG
. : . : . : . : . : . :
rJMFF018A07+ TAAAAGAAACACAATTACTCCACCCGTCTCATTTTACATGTCTTATTTTTCTTTTTAGTT
rJMSF002O06+ TAAAAGAAACACAATTACTCCACCCGTCTCATTTTACATGTCTTATTTTTCTTTTTAGTT
rJMSF027F18+ TAAAAGAAACACAATTACTCCACCCGTCTCATTTTACATGTCTTATTTTTCTTTTTAGTT
____________________________________________________________
consensus TAAAAGAAACACAATTACTCCACCCGTCTCATTTTACATGTCTTATTTTTCTTTTTAGTT
. : . : . : . : . : . :
rJMFF018A07+ TGTCCCAAAATGTTCTCCTCTCTTCAAAATTGAACATCACCATCAT
rJMSF002O06+ TGTCCCAAAATGTTCTCCTCTCTTCAAAATTGAACATCACCATCATTCTATTTTTTTCAG
rJMSF027F18+ TGTCCCAAAATGTTCTCCTCTCTTCAAAATTGAACATCACCATCATTCTATTTTTTTCAG
____________________________________________________________
consensus TGTCCCAAAATGTTCTCCTCTCTTCAAAATTGAACATCACCATCATTCTATTTTTTTCAG
. : . : . : . : . : . :
rJMSF002O06+ TGTACCCTTATTAGTTTTGCTTTCTTTT
rJMSF027F18+ TGTACCCTTATTAGTTTTGCTTTCTTTTGTCTTTTTTGCTTTTATTTTTAAATAAAAGCG
____________________________________________________________
consensus TGTACCCTTATTAGTTTTGCTTTCTTTTGTCTTTTTTGCTTTTATTTTTAAATAAAAGCG
. : . : . : . : . : . :
rJMSF027F18+ AGAAAAGTGAGAGGTATAATTGGAAAACATGTATTGTATCATTTACTTTAATTTTAAAAA
____________________________________________________________
consensus AGAAAAGTGAGAGGTATAATTGGAAAACATGTATTGTATCATTTACTTTAATTTTAAAAA