| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF027D08 | Sequence | 645 | 012040 (3) | 740 | 008550 (3) | ref|XP_009618339.1| | 3e-62 | PREDICTED: calcium homeostasis endoplasmic reticulum protein-like [Nicotiana to | |||
| JMSF031D10 | Sequence | 697 | 012040 (3) | ref|XP_009618339.1| | 2e-18 | PREDICTED: calcium homeostasis endoplasmic reticulum protein-like [Nicotiana to | 779 | 008550 (3) | ref|XP_004249424.1| | 8e-52 | PREDICTED: calcium homeostasis endoplasmic reticulum protein [Solanum lycopersi |
| JMSF048M22 | Sequence | 676 | 012040 (3) | ref|XP_009618339.1| | 1e-11 | PREDICTED: calcium homeostasis endoplasmic reticulum protein-like [Nicotiana to | 701 | 008550 (3) | ref|XP_009618339.1| | 2e-61 | PREDICTED: calcium homeostasis endoplasmic reticulum protein-like [Nicotiana to |
This contig is upended
. : . : . : . : . : . :
rJMSF031D10+ CCC
____________________________________________________________
consensus CCC
. : . : . : . : . : . :
rJMSF031D10+ AAATTTACCAGATCAAGATAAACAAGTTCCTCATATTCCCTCCATGGCCCCCCAGCAGTT
rJMSF048M22+ CCCCAGCAGTT
rJMSF027D08+ CTCCATGGCCCCCCAGCAGTT
____________________________________________________________
consensus AAATTTACCAGATCAAGATAAACAAGTTCCTCATATTCCCTCCATGGCCCCCCAGCAGTT
. : . : . : . : . : . :
rJMSF031D10+ TCACTCTACTTCAGTTCCTCATGCATTTCCCGGGACTTTGCCTGTGCCATCTTCAGTTCC
rJMSF048M22+ TCACTNTACTTCAGTTCCTCATGCATTTCCCGGGACTTTGCCTGTGCCATCTTCAGTTCC
rJMSF027D08+ TCACTCTACTTCAGTTCCTCATGCATTTCCCGGGACTTTGCCTGTGCCATCTTCAGTTCC
____________________________________________________________
consensus TCACTCTACTTCAGTTCCTCATGCATTTCCCGGGACTTTGCCTGTGCCATCTTCAGTTCC
. : . : . : . : . : . :
rJMSF031D10+ ACCGTCAAATCTACCACCAACAACACATCTGATGCCAGCATTGACACCAAGTGCGGGTGA
rJMSF048M22+ ACCGTCAAATCTACCACCAACAACACATCTGATGCCAGCATTGACACCAAGTGCGGGTGA
rJMSF027D08+ ACCGTCAAATCTACCACCAACAACACATCTGATGCCAGCATTGACACCAAGTGCGGGTGA
____________________________________________________________
consensus ACCGTCAAATCTACCACCAACAACACATCTGATGCCAGCATTGACACCAAGTGCGGGTGA
. : . : . : . : . : . :
rJMSF031D10+ AAAGTTGCCTCCGTATCCCTTGTTTCCACCTGGTCTTATTCCCGGGATGGTTAGAAAAAT
rJMSF048M22+ AAAGTTGCCTCCGTATCCCTTGTTTCCACCTGGTCTTATTCCCGGGATGGTTAGAAAAAT
rJMSF027D08+ AAAGTTGCCTCCGTATCCCTTGTTTCCACCTGGTCTTATTCCCGGGATGGTTAGAAAAAT
____________________________________________________________
consensus AAAGTTGCCTCCGTATCCCTTGTTTCCACCTGGTCTTATTCCCGGGATGGTTAGAAAAAT
. : . : . : . : . : . :
rJMSF031D10+ GCAGATAGGCAGTGGGGTGCCTTACTCCCCCTTGAGCCCTTTGGATATCCCGACTGTTAT
rJMSF048M22+ GCAGATAGGCAGTGGGGTGCCTTACTCCCCCTTGAGCCCTTTGGATATCCCGACTGTTAT
rJMSF027D08+ GCAGATAGGCAGTGGGGTGCCTTACTCCCCCTTGAGCCCTTTGGATATCCCGACTGTTAT
____________________________________________________________
consensus GCAGATAGGCAGTGGGGTGCCTTACTCCCCCTTGAGCCCTTTGGATATCCCGACTGTTAT
. : . : . : . : . : . :
rJMSF031D10+ ACCGCCCTCTACTGTTTCTCAATCCGAAATTCTTGAAAGAGTATCAAAATTC-TTAGGGA
rJMSF048M22+ ACCGCCCTCTACTGTTTCTCAATCCGAAATTCTTGAAAGAGTATCAAAATTCTTTAGGGA
rJMSF027D08+ ACCGCCCTCTACTGTTTCTCAATCCGAAATTCTTGAAAGAGTATCAAAATTCTTTAGGGA
____________________________________________________________
consensus ACCGCCCTCTACTGTTTCTCAATCCGAAATTCTTGAAAGAGTATCAAAATTCTTTAGGGA
. : . : . : . : . : . :
rJMSF031D10+ GATTGGTGAGGTTAACCCATCAGAAGGACCCATGAAACAAGCTGATTCACCCGATGAATA
rJMSF048M22+ GATTGGTGAGGTTAACCCATCAGAAGGACCCATGAAACAAGCTGATTCACCCGATGAATA
rJMSF027D08+ GATTGGTGAGGTTAACCCATCAGAAGGACCCATGAAACAAGCTGATTCACCCGATGAATA
____________________________________________________________
consensus GATTGGTGAGGTTAACCCATCAGAAGGACCCATGAAACAAGCTGATTCACCCGATGAATA
. : . : . : . : . : . :
rJMSF031D10+ TGACGATTATGAGAGAGAGCGAGAGCCTCCCATCCGAAAAGGCGGGGCTTGCATCCCTCC
rJMSF048M22+ TGACGATTATGAGAGAGAGCGAGAGCCTCACATCCGAAAAGGCGGGGCTTGCATCCCTCC
rJMSF027D08+ TGACGATTATGAGAGAGAGCGAGAGCCTCCCATCCGAAAAGGCGGGGCTTGCATCCCTCC
____________________________________________________________
consensus TGACGATTATGAGAGAGAGCGAGAGCCTCCCATCCGAAAAGGCGGGGCTTGCATCCCTCC
. : . : . : . : . : . :
rJMSF031D10+ CCCACCTAACCTCCAGGATTCTGATGGAAGTGCAGATCCTGAACCAAAAAGCTCAGGACG
rJMSF048M22+ CCCACCTAACCTCCAGGATTCTGATGGAAGTGCAGATCCTGAACCAAAAAGCTCAGGACG
rJMSF027D08+ CCCACCTAACCTCCAGGATTCTGATGGAAGTGCAGATCCTGAACCAAAAAGCTCAGGACG
____________________________________________________________
consensus CCCACCTAACCTCCAGGATTCTGATGGAAGTGCAGATCCTGAACCAAAAAGCTCAGGACG
. : . : . : . : . : . :
rJMSF031D10+ ACTGGGACTCGGTGCCAGCGCCAATCCAAATGAGGCCAGTCAATATGACGATGTTTACAG
rJMSF048M22+ ACTGGGACTCGGTGCCAGCGCCAATCCAAATGAGGCCAGTCAATATGACGATGTTTACAG
rJMSF027D08+ ACTGGGACTCGGTGCCAGCGCCAATCCAAATGAGGCCAGTCAATATGACGATGTTTACAG
____________________________________________________________
consensus ACTGGGACTCGGTGCCAGCGCCAATCCAAATGAGGCCAGTCAATATGACGATGTTTACAG
. : . : . : . : . : . :
rJMSF031D10+ TTCTTACCGGAAACAAAGAAGCACCAATTATCATTCAACAATGAGTGCAAGAGCTCCTTC
rJMSF048M22+ TTCTTACCGGAAACAAAGAAGCACCAATTATCATTCAACAATGAGTGCAAGAGCTCCTTC
rJMSF027D08+ TTCTTACCGGAAACAAAGAAGCACCAATTATCATTCAACAATGAGTGCAAGAGCTCCTTC
____________________________________________________________
consensus TTCTTACCGGAAACAAAGAAGCACCAATTATCATTCAACAATGAGTGCAAGAGCTCCTTC
. : . : . : . : . : . :
rJMSF031D10+ AACTAGGTAGTGAGATGTGTTAACAACTTGAGTTTTGCAGTTATATAGTCCCTAAGAGAG
rJMSF048M22+ AACTAGGTAGTGAGATGTGTTAACAACTTGAGTTTTGCAGTTATATAGTCCCTAAGAGAG
rJMSF027D08+ AACTAGGTAGTGAGATGTGTTAACAACTTGAGTTTTGCAGTTATATAGTCCCTAAGAGAG
____________________________________________________________
consensus AACTAGGTAGTGAGATGTGTTAACAACTTGAGTTTTGCAGTTATATAGTCCCTAAGAGAG
. : . : . : . : . : . :
rJMSF031D10+ ACAAAAAA-CATGTGATTAAAACAAAATTTTCTTTTTATTTGTACTCTGGTGTTAAC
rJMSF048M22+ ACAAAAAACCATGTGATTAAAACAAAATTT
rJMSF027D08+ ACAAAAAA-CATGTGATTAAAACAAAATTTTCTTTTTATTTGTACTCTGGTGTTAACNTT
____________________________________________________________
consensus ACAAAAAA-CATGTGATTAAAACAAAATTTTCTTTTTATTTGTACTCTGGTGTTAACNTT