Contig 008549:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF016G05Sequence552002381 (7)ref|XP_004516050.1|5e-21PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g56140715008549 (4)ref|XP_009608510.1|2e-60PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g56140
JMSF026M19Sequence621022134ref|XP_010657567.1|1e-42PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g56130665008549 (4)ref|XP_009608510.1|1e-50PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g56140
JMSF030P01Sequence436002381 (7)ref|XP_004516050.1|9e-22PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g56140722008549 (4)ref|XP_009608510.1|2e-64PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g56140
JMSF039H04Sequence641002381 (7)emb|CAN83365.1|3e-61hypothetical protein VITISV_032776 [Vitis vinifera]820008549 (4)ref|XP_009608510.1|6e-32PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g56140

Alignment

This contig is upended


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rJMSF039H04+                                TCGATCAGTTTTTTGAAAAAGTGATTTTACATATAATC
                      ____________________________________________________________
consensus                                   TCGATCAGTTTTTTGAAAAAGTGATTTTACATATAATC
 
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rJMSF039H04+          AGCTATTAGCTAACAGTTAATTTACCAAACTTCTTTCTACAATTAGTTAATGTTATTAAC
                      ____________________________________________________________
consensus             AGCTATTAGCTAACAGTTAATTTACCAAACTTCTTTCTACAATTAGTTAATGTTATTAAC
 
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rJMSF039H04+          TAGTCAAACTCACTAACCCAATCAGCTATCAGCTATTTACCAAACACCCGCATTGTCTGA
rJMSF026M19+                                                                TGATGT
                      ____________________________________________________________
consensus             TAGTCAAACTCACTAACCCAATCAGCTATCAGCTATTTACCAAACACCCGCATTTTCTGT
 
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rJMSF039H04+          AATAAACCTGGAAAAACCATTGAAATAGAAATTAGTAGTCCGATTCAGTTCTTAACCAAC
rJMSF026M19+          ATTTAGCTTTGGAGTGGTTGTCTTGGAGATTGTCAGTGGTCGTTCGAACTCTGACTCCAA
                      ____________________________________________________________
consensus             ATTTAGCTTTGGAGTGGTTTTGTTGTAGATTTTCGTTGTTCGTTTGAGTTCTTACTCCAC
 
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rJMSF039H04+          TGTTGTTTCAATCCTGACTGATTCTATTGATCTTTAGGCTTGGCATCTCCATGAGAATAA
rJMSF016G05+                                              GGCTTGGCATCTCCATGAGAATAA
rJMSF030P01+                                              GGCTTGGCATCTCCATGAGAATAA
rJMSF026M19+          CTTGGAACAAGATAAGAGATATCTTCTTGAA---TGGGCTTGGCATCTCCATGAGAATAA
                      ____________________________________________________________
consensus             TTTTGTTTCAGTTCTGAGTTATTTTCTTGATCTTTGGGCTTGGCATCTCCATGAGAATAA
 
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rJMSF039H04+          TAGCGCTGTTGAAGTGGTGGATGAAGATCTACTAGATTTCAACGAGGATGAAGTGAAACG
rJMSF016G05+          TAGCGCTGTTGAAGTGGTGGATGAAGATCTACTAGATTTCAACGAGGATGAAGTGAAACG
rJMSF030P01+          TAGCGCTGTTGAAGTGGTGGATGAAGATCTACTAGATTTCAACGAGGATGAAGTGAAACG
rJMSF026M19+          TAGCGCTGTTGAAGTGGTGGATGAAGATCTACTAGATTTCAACGAGGATGAAGTGAAACG
                      ____________________________________________________________
consensus             TAGCGCTGTTGAAGTGGTGGATGAAGATCTACTAGATTTCAACGAGGATGAAGTGAAACG
 
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rJMSF039H04+          AGCGATAGGGGTATCGCTTTTGTGCACCCAAGCATCCCCAACATCGCGGCCATCAATGTC
rJMSF016G05+          AGCGATAGGGGTATCGCTTTTGTGCACCCAAGCATCCCCAACATCGCGGCCATCAATGTC
rJMSF030P01+          AGCGATAGGGGTATCGCTTTTGTGCACCCAAGCATCCCCAACATCGCGGCCATCAATGTC
rJMSF026M19+          AGCGATAGGGGTATCGCTTTTGTGCACCCAAGCATCCCCAACATCGCGGCCATCAATGTC
                      ____________________________________________________________
consensus             AGCGATAGGGGTATCGCTTTTGTGCACCCAAGCATCCCCAACATCGCGGCCATCAATGTC
 
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rJMSF039H04+          CCGTGTGGTAGCGATGCTTTCAGGAGACGCTGAAGTACCAACCGTAACTTTAAAGCCCAG
rJMSF016G05+          CCGTGTGGTAGCGATGCTTTCAGGAGACGCTGAAGTACCAACCGTAACTTTAAAGCCCAG
rJMSF030P01+          CCGTGTGGTAGCGATGCTTTCAGGAGACGCTGAAGTACCAACCGTAACTTTAAAGCCCAG
rJMSF026M19+          CCGTGTGGTAGCGATGCTTTCAGGAGACGCTGAAGTACCAACCGTAACTTTAAAGCCCAG
                      ____________________________________________________________
consensus             CCGTGTGGTAGCGATGCTTTCAGGAGACGCTGAAGTACCAACCGTAACTTTAAAGCCCAG
 
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rJMSF039H04+          CTTCCTCATTGACTGTAAGTTCGATGATAAAACTAGTTTGCTGCAGTCTATTATTCTCTG
rJMSF016G05+          CTTCCTCATTGACTGTAAGTTCGATGATAAAACTAGTTTGCTGCAGTCTATTATTCTCTG
rJMSF030P01+          CTTCCTCATTGACTGTAAGTTCGATGATAAAACTAGTTTGCTGCAGTCTATTATTCTCTG
rJMSF026M19+          CTTCCTCATTGACTGTAAGTTCGATGATAAAACTAGTTTGCTGCAGTCTATTATTCTCTG
                      ____________________________________________________________
consensus             CTTCCTCATTGACTGTAAGTTCGATGATAAAACTAGTTTGCTGCAGTCTATTATTCTCTG
 
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rJMSF039H04+          TTCCCAAACGGCAGATGAAGGTCCATCAGTGGTTACTACAAGTGTGGCAGCAACAGATTT
rJMSF016G05+          TTCCCAAACGGCAGATGAAGGTCCATCAGTGGTTACTACAAGTGTGGCAGCAACAGATTT
rJMSF030P01+          TTCCCAAACGGCAGATGAAGGTCCATCAGTGGTTACTACAAGTGTGGCAGCAACAGATTT
rJMSF026M19+          TTCCCAAACGGCAGATGAAGGTCCATCAGTGGTTACTACAAGTGTGGCAGCAACAGATTT
                      ____________________________________________________________
consensus             TTCCCAAACGGCAGATGAAGGTCCATCAGTGGTTACTACAAGTGTGGCAGCAACAGATTT
 
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rJMSF039H04+          AAATTCTTCACCGTTAGATAATCCTTCCAGGCCTATCCTTCATGAGATCATTGGAGATGG
rJMSF016G05+          AAATTCTTCACCGTTAGATAATCCTTCCAGGCCTATCCTTCATGAGATCATTGGAGATGG
rJMSF030P01+          AAATTCTTCACCGTTAGATAATCCTTCCAGGCCTATCCTTCATGAGATCATTGGAGATGG
rJMSF026M19+          AAATTCTTCACCGTTAGATAATCCTTCCAGGCCTATCCTTCATGAGATCATTGGAGATGG
                      ____________________________________________________________
consensus             AAATTCTTCACCGTTAGATAATCCTTCCAGGCCTATCCTTCATGAGATCATTGGAGATGG
 
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rJMSF039H04+          TAGGTAGGCATGTGATGCCATCAAAGTTTTTGCAATCGCATTGCCTGCTGCAATATAGGT
rJMSF016G05+          TAGGTAGGCATGTGATGCCATCAAAGTTTTTGCAATCGCATTGCCTGCTGCAATATAGGT
rJMSF030P01+          TAGGTAGGCATGTGATGCCATCAAAGTTTTTGCAATCGCATTGCCTGCTGCAATATAGGT
rJMSF026M19+          TAGGTAGGCATGTGATGCCATCAAAGTTTTTGCAATCGCATTGCCTGCTGCAATATAGGT
                      ____________________________________________________________
consensus             TAGGTAGGCATGTGATGCCATCAAAGTTTTTGCAATCGCATTGCCTGCTGCAATATAGGT
 
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rJMSF039H04+          TTGCCTTTCACCAATGATACTTATGTACTAGTTTTTGTTACTATTGTGTATGTCATGGGC
rJMSF016G05+          TTGCCTTTCACCAATGATACTTATGTACTAGTTTTTGTTACTATTGTGTATGTCATGGGC
rJMSF030P01+          TTGCCTTTCACCAATGATACTTATGTACTAGTTTTTGTTACTATTGTGTATGTCATGGGC
rJMSF026M19+          TTGCCTTTCACCAATGATACTTATGTACTAGTTTTTGTTACTATTGTGTATGTCATGGGC
                      ____________________________________________________________
consensus             TTGCCTTTCACCAATGATACTTATGTACTAGTTTTTGTTACTATTGTGTATGTCATGGGC
 
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rJMSF039H04+          AGTGGTCCCGCGTTATAGTACAGGTTCTTTTAGGA                         
rJMSF016G05+          AGTGGTCCCGCGTTATAGTACAGGTTCTTTTAGGA                         
rJMSF030P01+          AGTGGTCCCGCGTTATAGTACAGGTTCTTTTAGGAC                        
rJMSF026M19+          AGTGGTCCCGCGTTATAGTACAGGTTCTTTTAGGACATGTATACATACCATTGATGGTAT
                      ____________________________________________________________
consensus             AGTGGTCCCGCGTTATAGTACAGGTTCTTTTAGGACATGTATACATACCATTGATGGTAT