Contig 008545:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF031C14Sequence585012914 (3)ref|XP_006468291.1|2e-20PREDICTED: U3 small nucleolar RNA-interacting protein 2-like [Citrus sinensis] 538008545 (3)emb|CDP05614.1|1e-32unnamed protein product [Coffea canephora]
JMSF026H07Sequence648012914 (3)ref|XP_002281628.1|1e-33PREDICTED: U3 small nucleolar RNA-interacting protein 2 [Vitis vinifera] ref|XP754008545 (3)ref|XP_004233176.1|1e-48PREDICTED: U3 small nucleolar RNA-interacting protein 2 [Solanum lycopersicum]
JMSF036E01Sequence587012914 (3)ref|XP_006468291.1|1e-22PREDICTED: U3 small nucleolar RNA-interacting protein 2-like [Citrus sinensis] 707008545 (3)ref|XP_004233176.1|3e-38PREDICTED: U3 small nucleolar RNA-interacting protein 2 [Solanum lycopersicum]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF026H07+ CTAGTGAAGGAAGTATAGAACATTGGACTGCAAAGAAGAA
                      ____________________________________________________________
consensus CTAGTGAAGGAAGTATAGAACATTGGACTGCAAAGAAGAA
 
. : . : . : . : . : . :
rJMSF036E01+ TGAAAAATGCACACACTTCACTTATTGAGCAGAGAAGTACAGG
rJMSF026H07+ GAAACCCATTCACATTGTGAAAAATGCACACACTTCACTTATTGAGCAGAGAAGTACAGG
                      ____________________________________________________________
consensus GAAACCCATTCACATTGTGAAAAATGCACACACTTCACTTATTGAGCAGAGAAGTACAGG
 
. : . : . : . : . : . :
rJMSF036E01+ AATGCTGTCAAATGGTGACATAGAAGCATCAAATTGTGCAGGACATGTTGCCTTAAATCC
rJMSF026H07+ AATGCTGTCAAATGGTGACATAGAAGCATCAAATTGTGCAGGACATGTTGCCTTAAATCC
                      ____________________________________________________________
consensus AATGCTGTCAAATGGTGACATAGAAGCATCAAATTGTGCAGGACATGTTGCCTTAAATCC
 
. : . : . : . : . : . :
rJMSF036E01+ TGAGAGTGTCTCTTCATCTGCACTCTCCTGGGTCAGTTCAGTGGCTGTCTGCAGAAGCAG
rJMFF031C14+ TGAGAGTGTCTCTTCATCTGCACTCTCCTGGGTCAGTTCAGTGGCTGTCTGCAGAAGCAG
rJMSF026H07+ TGAGAGTGTCTCTTCATCTGCACTCTCCTGGGTCAGTTCAGTGGCTGTCTGCAGAAGCAG
                      ____________________________________________________________
consensus TGAGAGTGTCTCTTCATCTGCACTCTCCTGGGTCAGTTCAGTGGCTGTCTGCAGAAGCAG
 
. : . : . : . : . : . :
rJMSF036E01+ TGATCTTGCTGCCTCAGGAGCAGGCAATGGTCTAATTCGTCTTTGGAAACTTGAGGGTGA
rJMFF031C14+ TGATCTTGCTGCCTCAGGAGCAGGCAATGGTCTAATTCGTCTTTGGAAACTTGAGGGTGA
rJMSF026H07+ TGATCTTGCTGCCTCAGGAGCAGGCAATGGTCTAATTCGTCTTTGGAAACTTGAGGGTGA
                      ____________________________________________________________
consensus TGATCTTGCTGCCTCAGGAGCAGGCAATGGTCTAATTCGTCTTTGGAAACTTGAGGGTGA
 
. : . : . : . : . : . :
rJMSF036E01+ ATCCAAGGGAATCTGTCCTTTGTTTGAGCTTCCATTG------GCTGGATTTGTAAATTC
rJMFF031C14+ ATCCAAGGGAATCTGTCCTTTGTTTGAGCTTCCATTGGTAAGAGCTGGATTTGTAAATTC
rJMSF026H07+ ATCCAAGGGAATCTGTCCTTTGTTTGAGCTTCCATTG------GCTGGATTTGTAAATTC
                      ____________________________________________________________
consensus ATCCAAGGGAATCTGTCCTTTGTTTGAGCTTCCATTG------GCTGGATTTGTAAATTC
 
. : . : . : . : . : . :
rJMSF036E01+ TTTAGCTTTTGCAAAATCTGGACGCTTCCTTGTTGCCGGAGTTGGAAAGGAGCCTCGCTT
rJMFF031C14+ TTTAGCTTTTGCAAAATCTGGACGCTTCCTTGTTGCCGGAGTTGGAAAGGAGCCTCGCTT
rJMSF026H07+ TTTAGCTTTTGCAAAATCTGGACGCTTCCTTGTTGCCGGAGTTGGAAAGGAGCCTCGCTT
                      ____________________________________________________________
consensus TTTAGCTTTTGCAAAATCTGGACGCTTCCTTGTTGCCGGAGTTGGAAAGGAGCCTCGCTT
 
. : . : . : . : . : . :
rJMSF036E01+ AGGAAGGTGGGGTCGTATCGCTAATGCTCAGAATGGAGTTGCTATACATTCTTTCAAGCA
rJMFF031C14+ AGGAAGGTGGGGTCGTATCGCTAATGCTCAGAATGGAGTTGCTATACATTCTTTCAAGCA
rJMSF026H07+ AGGAAGGTGGGGTCGTATCGCTAATGCTCAGAATGGAGTTGCTATACATTCTTTCAAGCA
                      ____________________________________________________________
consensus AGGAAGGTGGGGTCGTATCGCTAATGCTCAGAATGGAGTTGCTATACATTCTTTCAAGCA
 
. : . : . : . : . : . :
rJMSF036E01+ CACGTGAAGTTGGTTGACGGTTTGCTTGCTGCAACTTCGTCTCAATACTAAAAAGGGTGT
rJMFF031C14+ CACGTGAAGTTGGTTGACGGTTTGCTTGCTGCAACTTCGTCTCAATACTAAAAAGGGTGT
rJMSF026H07+ CACGTGAAGTTGGTTGACGGTTTGCTTGCTGCAACTTCGTCTCAATACTAAAAAGGGTGT
                      ____________________________________________________________
consensus CACGTGAAGTTGGTTGACGGTTTGCTTGCTGCAACTTCGTCTCAATACTAAAAAGGGTGT
 
. : . : . : . : . : . :
rJMSF036E01+ TCTCTCTTCGATGGTAACTCTTTTGGATGCACGGGAGCAAGATTTCCCACAGAAGTTAAG
rJMFF031C14+ TCTCTCTTCGATGGTAACTCTTTTGGATGCACGGGAGCAAGATTTCCCACAGAAGTTAAG
rJMSF026H07+ TCTCTCTTCGATGGTAACTCTTTTGGATGCACGGGAGCAAGATTTCCCACAGAAGTTAAG
                      ____________________________________________________________
consensus TCTCTCTTCGATGGTAACTCTTTTGGATGCACGGGAGCAAGATTTCCCACAGAAGTTAAG
 
. : . : . : . : . : . :
rJMSF036E01+ TACTCCATTCATACCTAAATTTTGTAGTTGAAAGTTAATCTCGTATTCAATATAAATTAG
rJMFF031C14+ TACTCCATTCATACCTAAATTTTGTAGTTGAAAGTTAATCTCGTATTCAATATAAATTAG
rJMSF026H07+ TACTCCATTCATACCTAAATTTTGTAGTTGAAAGTTAATCTCGTATTCAATATAAATTAG
                      ____________________________________________________________
consensus TACTCCATTCATACCTAAATTTTGTAGTTGAAAGTTAATCTCGTATTCAATATAAATTAG
 
. : . : . : . : . : . :
rJMSF036E01+ GCCCGATATAATGCTGAGAGTGCTGTTGTAAGATGGACAATAGTGAATCAATCAAAATTT
rJMFF031C14+ GCCCGATATAATGCTGAGAGTGCTGTTGTAAGATGGACAATAGTGAATCAATCAAAAT
rJMSF026H07+ GCCCGATATAATGCTGAGAGTGCTGTTGTAAGATGGACAATAGTGAATCAATCAAAATTT
                      ____________________________________________________________
consensus GCCCGATATAATGCTGAGAGTGCTGTTGTAAGATGGACAATAGTGAATCAATCAAAATTT
 
. : . : . : . : . : . :
rJMSF036E01+ TCATCCCAGAGAAGCCATTGTGTTTGCCATTCATTGTAGTTGTATTTTTGCAAGAGGAT
rJMSF026H07+ TCATCCCAGAGAAGCCATTGTGTTTGCCATTCATTGTAGTTGTATTTTTGCAAGAGGATT
                      ____________________________________________________________
consensus TCATCCCAGAGAAGCCATTGTGTTTGCCATTCATTGTAGTTGTATTTTTGCAAGAGGATT