clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF031C14 | Sequence | 585 | 012914 (3) | ref|XP_006468291.1| | 2e-20 | PREDICTED: U3 small nucleolar RNA-interacting protein 2-like [Citrus sinensis] | 538 | 008545 (3) | emb|CDP05614.1| | 1e-32 | unnamed protein product [Coffea canephora] |
JMSF026H07 | Sequence | 648 | 012914 (3) | ref|XP_002281628.1| | 1e-33 | PREDICTED: U3 small nucleolar RNA-interacting protein 2 [Vitis vinifera] ref|XP | 754 | 008545 (3) | ref|XP_004233176.1| | 1e-48 | PREDICTED: U3 small nucleolar RNA-interacting protein 2 [Solanum lycopersicum] |
JMSF036E01 | Sequence | 587 | 012914 (3) | ref|XP_006468291.1| | 1e-22 | PREDICTED: U3 small nucleolar RNA-interacting protein 2-like [Citrus sinensis] | 707 | 008545 (3) | ref|XP_004233176.1| | 3e-38 | PREDICTED: U3 small nucleolar RNA-interacting protein 2 [Solanum lycopersicum] |
This contig is upended
. : . : . : . : . : . :
rJMSF026H07+ CTAGTGAAGGAAGTATAGAACATTGGACTGCAAAGAAGAA
____________________________________________________________
consensus CTAGTGAAGGAAGTATAGAACATTGGACTGCAAAGAAGAA
. : . : . : . : . : . :
rJMSF036E01+ TGAAAAATGCACACACTTCACTTATTGAGCAGAGAAGTACAGG
rJMSF026H07+ GAAACCCATTCACATTGTGAAAAATGCACACACTTCACTTATTGAGCAGAGAAGTACAGG
____________________________________________________________
consensus GAAACCCATTCACATTGTGAAAAATGCACACACTTCACTTATTGAGCAGAGAAGTACAGG
. : . : . : . : . : . :
rJMSF036E01+ AATGCTGTCAAATGGTGACATAGAAGCATCAAATTGTGCAGGACATGTTGCCTTAAATCC
rJMSF026H07+ AATGCTGTCAAATGGTGACATAGAAGCATCAAATTGTGCAGGACATGTTGCCTTAAATCC
____________________________________________________________
consensus AATGCTGTCAAATGGTGACATAGAAGCATCAAATTGTGCAGGACATGTTGCCTTAAATCC
. : . : . : . : . : . :
rJMSF036E01+ TGAGAGTGTCTCTTCATCTGCACTCTCCTGGGTCAGTTCAGTGGCTGTCTGCAGAAGCAG
rJMFF031C14+ TGAGAGTGTCTCTTCATCTGCACTCTCCTGGGTCAGTTCAGTGGCTGTCTGCAGAAGCAG
rJMSF026H07+ TGAGAGTGTCTCTTCATCTGCACTCTCCTGGGTCAGTTCAGTGGCTGTCTGCAGAAGCAG
____________________________________________________________
consensus TGAGAGTGTCTCTTCATCTGCACTCTCCTGGGTCAGTTCAGTGGCTGTCTGCAGAAGCAG
. : . : . : . : . : . :
rJMSF036E01+ TGATCTTGCTGCCTCAGGAGCAGGCAATGGTCTAATTCGTCTTTGGAAACTTGAGGGTGA
rJMFF031C14+ TGATCTTGCTGCCTCAGGAGCAGGCAATGGTCTAATTCGTCTTTGGAAACTTGAGGGTGA
rJMSF026H07+ TGATCTTGCTGCCTCAGGAGCAGGCAATGGTCTAATTCGTCTTTGGAAACTTGAGGGTGA
____________________________________________________________
consensus TGATCTTGCTGCCTCAGGAGCAGGCAATGGTCTAATTCGTCTTTGGAAACTTGAGGGTGA
. : . : . : . : . : . :
rJMSF036E01+ ATCCAAGGGAATCTGTCCTTTGTTTGAGCTTCCATTG------GCTGGATTTGTAAATTC
rJMFF031C14+ ATCCAAGGGAATCTGTCCTTTGTTTGAGCTTCCATTGGTAAGAGCTGGATTTGTAAATTC
rJMSF026H07+ ATCCAAGGGAATCTGTCCTTTGTTTGAGCTTCCATTG------GCTGGATTTGTAAATTC
____________________________________________________________
consensus ATCCAAGGGAATCTGTCCTTTGTTTGAGCTTCCATTG------GCTGGATTTGTAAATTC
. : . : . : . : . : . :
rJMSF036E01+ TTTAGCTTTTGCAAAATCTGGACGCTTCCTTGTTGCCGGAGTTGGAAAGGAGCCTCGCTT
rJMFF031C14+ TTTAGCTTTTGCAAAATCTGGACGCTTCCTTGTTGCCGGAGTTGGAAAGGAGCCTCGCTT
rJMSF026H07+ TTTAGCTTTTGCAAAATCTGGACGCTTCCTTGTTGCCGGAGTTGGAAAGGAGCCTCGCTT
____________________________________________________________
consensus TTTAGCTTTTGCAAAATCTGGACGCTTCCTTGTTGCCGGAGTTGGAAAGGAGCCTCGCTT
. : . : . : . : . : . :
rJMSF036E01+ AGGAAGGTGGGGTCGTATCGCTAATGCTCAGAATGGAGTTGCTATACATTCTTTCAAGCA
rJMFF031C14+ AGGAAGGTGGGGTCGTATCGCTAATGCTCAGAATGGAGTTGCTATACATTCTTTCAAGCA
rJMSF026H07+ AGGAAGGTGGGGTCGTATCGCTAATGCTCAGAATGGAGTTGCTATACATTCTTTCAAGCA
____________________________________________________________
consensus AGGAAGGTGGGGTCGTATCGCTAATGCTCAGAATGGAGTTGCTATACATTCTTTCAAGCA
. : . : . : . : . : . :
rJMSF036E01+ CACGTGAAGTTGGTTGACGGTTTGCTTGCTGCAACTTCGTCTCAATACTAAAAAGGGTGT
rJMFF031C14+ CACGTGAAGTTGGTTGACGGTTTGCTTGCTGCAACTTCGTCTCAATACTAAAAAGGGTGT
rJMSF026H07+ CACGTGAAGTTGGTTGACGGTTTGCTTGCTGCAACTTCGTCTCAATACTAAAAAGGGTGT
____________________________________________________________
consensus CACGTGAAGTTGGTTGACGGTTTGCTTGCTGCAACTTCGTCTCAATACTAAAAAGGGTGT
. : . : . : . : . : . :
rJMSF036E01+ TCTCTCTTCGATGGTAACTCTTTTGGATGCACGGGAGCAAGATTTCCCACAGAAGTTAAG
rJMFF031C14+ TCTCTCTTCGATGGTAACTCTTTTGGATGCACGGGAGCAAGATTTCCCACAGAAGTTAAG
rJMSF026H07+ TCTCTCTTCGATGGTAACTCTTTTGGATGCACGGGAGCAAGATTTCCCACAGAAGTTAAG
____________________________________________________________
consensus TCTCTCTTCGATGGTAACTCTTTTGGATGCACGGGAGCAAGATTTCCCACAGAAGTTAAG
. : . : . : . : . : . :
rJMSF036E01+ TACTCCATTCATACCTAAATTTTGTAGTTGAAAGTTAATCTCGTATTCAATATAAATTAG
rJMFF031C14+ TACTCCATTCATACCTAAATTTTGTAGTTGAAAGTTAATCTCGTATTCAATATAAATTAG
rJMSF026H07+ TACTCCATTCATACCTAAATTTTGTAGTTGAAAGTTAATCTCGTATTCAATATAAATTAG
____________________________________________________________
consensus TACTCCATTCATACCTAAATTTTGTAGTTGAAAGTTAATCTCGTATTCAATATAAATTAG
. : . : . : . : . : . :
rJMSF036E01+ GCCCGATATAATGCTGAGAGTGCTGTTGTAAGATGGACAATAGTGAATCAATCAAAATTT
rJMFF031C14+ GCCCGATATAATGCTGAGAGTGCTGTTGTAAGATGGACAATAGTGAATCAATCAAAAT
rJMSF026H07+ GCCCGATATAATGCTGAGAGTGCTGTTGTAAGATGGACAATAGTGAATCAATCAAAATTT
____________________________________________________________
consensus GCCCGATATAATGCTGAGAGTGCTGTTGTAAGATGGACAATAGTGAATCAATCAAAATTT
. : . : . : . : . : . :
rJMSF036E01+ TCATCCCAGAGAAGCCATTGTGTTTGCCATTCATTGTAGTTGTATTTTTGCAAGAGGAT
rJMSF026H07+ TCATCCCAGAGAAGCCATTGTGTTTGCCATTCATTGTAGTTGTATTTTTGCAAGAGGATT
____________________________________________________________
consensus TCATCCCAGAGAAGCCATTGTGTTTGCCATTCATTGTAGTTGTATTTTTGCAAGAGGATT