Contig 008542:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF011C13Sequence161009349 (12)691008542 (4)ref|XP_009619838.1|1e-93PREDICTED: auxin response factor 4-like [Nicotiana tomentosiformis]
JMFS033D03Sequence373008542 (4)gb|ADW66148.1|3e-25auxin response factor [Solanum nigrum]
JMFS049C10Sequence620008542 (4)ref|XP_009619838.1|2e-96PREDICTED: auxin response factor 4-like [Nicotiana tomentosiformis]
JMSF025I18Sequence530009349 (12)756008542 (4)ref|XP_009619838.1|2e-101PREDICTED: auxin response factor 4-like [Nicotiana tomentosiformis]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF025I18- CCATAAGGACCACACATGNTTACACAGNTCATAAAC
                      ____________________________________________________________
consensus CCATAAGGACCACACATGNTTACACAGNTCATAAAC
 
. : . : . : . : . : . :
rJMSF025I18- AGGTTTCCTCCAACACATAATTGTCACATGGAGTAAGCAATTATTGAGCACACAACTTCA
                      ____________________________________________________________
consensus AGGTTTCCTCCAACACATAATTGTCACATGGAGTAAGCAATTATTGAGCACACAACTTCA
 
. : . : . : . : . : . :
JMFS049C10+ TAGAGCGAGCATGAAATGGGAAGCAATCCCTAAAAG
rJMSF025I18- GTATAATAGAGCATTACAGCATAATAGAGCGAGCATGAAATGGGAAGCAAATCCTAAAAG
                      ____________________________________________________________
consensus GTATAATAGAGCATTACAGCATAATAGAGCGAGCATGAAATGGGAAGCAATTCCTAAAAG
 
. : . : . : . : . : . :
JMFS049C10+ ATGAGTG-TGGAGAAGAATCAGGCTGGCCGACCGAAGAGGACTTGGATGCATCCGTGACT
rJMFF011C13- GTGACT
JMFS033D03+ GTGACT
rJMSF025I18- ATGAGTGTTGGAGAAGAATCAGGCTGGCCGACCGAAGAGGACTTGGATGCATCCGTGACT
                      ____________________________________________________________
consensus ATGAGTGTTGGAGAAGAATCAGGCTGGCCGACCGAAGAGGACTTGGATGCATCCGTGACT
 
. : . : . : . : . : . :
JMFS049C10+ GGCGGCGCCTCCTCCAAACAACTCTGGGTGTCGTCACTCATCCCTCCTACCGTCATTTTC
rJMFF011C13- GGCGGCGCCTCCTCCAAACAACTCTGGGTGTCGTCACTCATCCCTCCTACCGTCATTTTC
JMFS033D03+ GGCGGCGCCTCCTCCAAACAACTCTGGGTGTCGTCACTCATCCCTCCTACCGTCATTTTC
rJMSF025I18- GGCGGCGCCTCCTCCAAACAACTCTGGGTGTCGTCACTCATCCCTCCTACCGTCATTTTC
                      ____________________________________________________________
consensus GGCGGCGCCTCCTCCAAACAACTCTGGGTGTCGTCACTCATCCCTCCTACCGTCATTTTC
 
. : . : . : . : . : . :
JMFS049C10+ TCCACCTCTTCTTGGGTGTATATGTGGATTTTGGAGACTACTTCACAGAACTCGTGCCAT
rJMFF011C13- TCCACCTCTTCTTGGGTGTATATGTGGATTTTGGAGACTACTTCACAGAACTCGTGCCAT
JMFS033D03+ TCCACCTCTTCTTGGGTGTATATGTGGATTTTGGAGACTACTTCACAGAACTCG
rJMSF025I18- TCCACCTCTTCTTGGGTGTATATGTGGATTTTGGAGACTACTTCACAGAACTCGTGCCAT
                      ____________________________________________________________
consensus TCCACCTCTTCTTGGGTGTATATGTGGATTTTGGAGACTACTTCACAGAACTCGTGCCAT
 
. : . : . : . : . : . :
JMFS049C10+ GGATCATCTCCCACGACCATCATGTCATTCTCACTATCGGTGTACAAGACTCTCCAGCCT
rJMFF011C13- GGATCATCTCCCACGACCATCATGTCATTCTCACTATCGGTGTACAAGACTCTCCAGCCT
rJMSF025I18- GGATCATCTCCCACGACCATCATGTCATTCTCACTATCGGTGTACAAGACTCTCCAGCCT
                      ____________________________________________________________
consensus GGATCATCTCCCACGACCATCATGTCATTCTCACTATCGGTGTACAAGACTCTCCAGCCT
 
. : . : . : . : . : . :
JMFS049C10+ TTATTTGGATCCCTTAGGAGGTCTTCCATGCCAAAAAGCTTCTCCAGCTCAACCAGCAGG
rJMFF011C13- TTATTTGGATCCCTTAGGAGGTCTTCCATGCCAAAAAGCTTCTCCAGCTCAACCAGCAGG
rJMSF025I18- TTATTTGGATCCCTTAGGAGGTCTTCCATGCCAAAAAGCTTCTCCAGCTCAACCAGCAGG
                      ____________________________________________________________
consensus TTATTTGGATCCCTTAGGAGGTCTTCCATGCCAAAAAGCTTCTCCAGCTCAACCAGCAGG
 
. : . : . : . : . : . :
JMFS049C10+ TCATCATAGCCGTTGAGTCTCGAGAGATCTATAGCTCTTCCTACCAAGCTTCCTTGTTTG
rJMFF011C13- TCATCATAGCCGTTGAGTCTCGAGAGATCTATAGCTCTTCCTACCAAGCTTCCTTGTTTG
rJMSF025I18- TCATCATAGCCGTTGAGTCTCGAGAGATCTATAGCTCTTCCTACCAAGCTTCCTTGTTTG
                      ____________________________________________________________
consensus TCATCATAGCCGTTGAGTCTCGAGAGATCTATAGCTCTTCCTACCAAGCTTCCTTGTTTG
 
. : . : . : . : . : . :
JMFS049C10+ TGAACCTTTGTGCAGCTCCTCTTACCACAACTTTGTGAGCTTGGGGTGGACGGCTCGTTG
rJMFF011C13- TGAACCTTTGTGCAGCTCCTCTTACCACAACTTTGTGAGCTTGGGGTGGACGGCTCGTTG
rJMSF025I18- TGAACCTTTGTGCAGCTCCTCTTACCACAACTTTGTGAGCTTGGGGTGGACGGCTCGTTG
                      ____________________________________________________________
consensus TGAACCTTTGTGCAGCTCCTCTTACCACAACTTTGTGAGCTTGGGGTGGACGGCTCGTTG
 
. : . : . : . : . : . :
JMFS049C10+ GTCAAAGAAAAGCCAAATAGTTTGCAGGGTGCTGCTGTTCCATTCAAAGGCTCGATTTTC
rJMFF011C13- GTCAAAGAAAAGCCAAATAG
rJMSF025I18- GTCAAAGAAAAGCCAAATAGTTTGCAGGGTGCTGCTGTTCCATTCAAAGGCTCGATTTTC
                      ____________________________________________________________
consensus GTCAAAGAAAAGCCAAATAGTTTGCAGGGTGCTGCTGTTCCATTCAAAGGCTCGATTTTC
 
. : . : . : . : . : . :
JMFS049C10+ TCATTCGTGAAGTGCGCCTCTCGAGAAAGGACCCAAACTGCCTACTCCAGAGGGCTCTGC
rJMSF025I18- TCATTCGTGAAGTGCGTCTCTGGAGTAGGCAGTTTGGGTCCTTTCTCGAGAGGGCTCTGC
                      ____________________________________________________________
consensus TCATTCGTGAAGTGCGTCTCTGGAGTAGGGAGTTTGGGTGCTTTCTCGAGAGGGCTCTGC
 
. : . : . : . : . : . :
JMFS049C10+ TCGTTTGCGTAATTTTGAACTATACGTTCTTCCCTCGTTGCTCCA
rJMSF025I18- TCGTTTGCGTAATTTTGAACTATACGTTCTTCCCTCGTTGCTCCACCACCTTGGATGGAG
                      ____________________________________________________________
consensus TCGTTTGCGTAATTTTGAACTATACGTTCTTCCCTCGTTGCTCCACCACCTTGGATGGAG