Contig 008542:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF011C13Sequence161009349 (12)691008542 (4)ref|XP_009619838.1|1e-93PREDICTED: auxin response factor 4-like [Nicotiana tomentosiformis]
JMFS033D03Sequence373008542 (4)gb|ADW66148.1|3e-25auxin response factor [Solanum nigrum]
JMFS049C10Sequence620008542 (4)ref|XP_009619838.1|2e-96PREDICTED: auxin response factor 4-like [Nicotiana tomentosiformis]
JMSF025I18Sequence530009349 (12)756008542 (4)ref|XP_009619838.1|2e-101PREDICTED: auxin response factor 4-like [Nicotiana tomentosiformis]

Alignment

This contig is upended


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rJMSF025I18-                                  CCATAAGGACCACACATGNTTACACAGNTCATAAAC
                      ____________________________________________________________
consensus                                     CCATAAGGACCACACATGNTTACACAGNTCATAAAC
 
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rJMSF025I18-          AGGTTTCCTCCAACACATAATTGTCACATGGAGTAAGCAATTATTGAGCACACAACTTCA
                      ____________________________________________________________
consensus             AGGTTTCCTCCAACACATAATTGTCACATGGAGTAAGCAATTATTGAGCACACAACTTCA
 
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JMFS049C10+                                   TAGAGCGAGCATGAAATGGGAAGCAATCCCTAAAAG
rJMSF025I18-          GTATAATAGAGCATTACAGCATAATAGAGCGAGCATGAAATGGGAAGCAAATCCTAAAAG
                      ____________________________________________________________
consensus             GTATAATAGAGCATTACAGCATAATAGAGCGAGCATGAAATGGGAAGCAATTCCTAAAAG
 
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JMFS049C10+           ATGAGTG-TGGAGAAGAATCAGGCTGGCCGACCGAAGAGGACTTGGATGCATCCGTGACT
rJMFF011C13-                                                                GTGACT
JMFS033D03+                                                                 GTGACT
rJMSF025I18-          ATGAGTGTTGGAGAAGAATCAGGCTGGCCGACCGAAGAGGACTTGGATGCATCCGTGACT
                      ____________________________________________________________
consensus             ATGAGTGTTGGAGAAGAATCAGGCTGGCCGACCGAAGAGGACTTGGATGCATCCGTGACT
 
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JMFS049C10+           GGCGGCGCCTCCTCCAAACAACTCTGGGTGTCGTCACTCATCCCTCCTACCGTCATTTTC
rJMFF011C13-          GGCGGCGCCTCCTCCAAACAACTCTGGGTGTCGTCACTCATCCCTCCTACCGTCATTTTC
JMFS033D03+           GGCGGCGCCTCCTCCAAACAACTCTGGGTGTCGTCACTCATCCCTCCTACCGTCATTTTC
rJMSF025I18-          GGCGGCGCCTCCTCCAAACAACTCTGGGTGTCGTCACTCATCCCTCCTACCGTCATTTTC
                      ____________________________________________________________
consensus             GGCGGCGCCTCCTCCAAACAACTCTGGGTGTCGTCACTCATCCCTCCTACCGTCATTTTC
 
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JMFS049C10+           TCCACCTCTTCTTGGGTGTATATGTGGATTTTGGAGACTACTTCACAGAACTCGTGCCAT
rJMFF011C13-          TCCACCTCTTCTTGGGTGTATATGTGGATTTTGGAGACTACTTCACAGAACTCGTGCCAT
JMFS033D03+           TCCACCTCTTCTTGGGTGTATATGTGGATTTTGGAGACTACTTCACAGAACTCG      
rJMSF025I18-          TCCACCTCTTCTTGGGTGTATATGTGGATTTTGGAGACTACTTCACAGAACTCGTGCCAT
                      ____________________________________________________________
consensus             TCCACCTCTTCTTGGGTGTATATGTGGATTTTGGAGACTACTTCACAGAACTCGTGCCAT
 
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JMFS049C10+           GGATCATCTCCCACGACCATCATGTCATTCTCACTATCGGTGTACAAGACTCTCCAGCCT
rJMFF011C13-          GGATCATCTCCCACGACCATCATGTCATTCTCACTATCGGTGTACAAGACTCTCCAGCCT
rJMSF025I18-          GGATCATCTCCCACGACCATCATGTCATTCTCACTATCGGTGTACAAGACTCTCCAGCCT
                      ____________________________________________________________
consensus             GGATCATCTCCCACGACCATCATGTCATTCTCACTATCGGTGTACAAGACTCTCCAGCCT
 
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JMFS049C10+           TTATTTGGATCCCTTAGGAGGTCTTCCATGCCAAAAAGCTTCTCCAGCTCAACCAGCAGG
rJMFF011C13-          TTATTTGGATCCCTTAGGAGGTCTTCCATGCCAAAAAGCTTCTCCAGCTCAACCAGCAGG
rJMSF025I18-          TTATTTGGATCCCTTAGGAGGTCTTCCATGCCAAAAAGCTTCTCCAGCTCAACCAGCAGG
                      ____________________________________________________________
consensus             TTATTTGGATCCCTTAGGAGGTCTTCCATGCCAAAAAGCTTCTCCAGCTCAACCAGCAGG
 
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JMFS049C10+           TCATCATAGCCGTTGAGTCTCGAGAGATCTATAGCTCTTCCTACCAAGCTTCCTTGTTTG
rJMFF011C13-          TCATCATAGCCGTTGAGTCTCGAGAGATCTATAGCTCTTCCTACCAAGCTTCCTTGTTTG
rJMSF025I18-          TCATCATAGCCGTTGAGTCTCGAGAGATCTATAGCTCTTCCTACCAAGCTTCCTTGTTTG
                      ____________________________________________________________
consensus             TCATCATAGCCGTTGAGTCTCGAGAGATCTATAGCTCTTCCTACCAAGCTTCCTTGTTTG
 
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JMFS049C10+           TGAACCTTTGTGCAGCTCCTCTTACCACAACTTTGTGAGCTTGGGGTGGACGGCTCGTTG
rJMFF011C13-          TGAACCTTTGTGCAGCTCCTCTTACCACAACTTTGTGAGCTTGGGGTGGACGGCTCGTTG
rJMSF025I18-          TGAACCTTTGTGCAGCTCCTCTTACCACAACTTTGTGAGCTTGGGGTGGACGGCTCGTTG
                      ____________________________________________________________
consensus             TGAACCTTTGTGCAGCTCCTCTTACCACAACTTTGTGAGCTTGGGGTGGACGGCTCGTTG
 
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JMFS049C10+           GTCAAAGAAAAGCCAAATAGTTTGCAGGGTGCTGCTGTTCCATTCAAAGGCTCGATTTTC
rJMFF011C13-          GTCAAAGAAAAGCCAAATAG                                        
rJMSF025I18-          GTCAAAGAAAAGCCAAATAGTTTGCAGGGTGCTGCTGTTCCATTCAAAGGCTCGATTTTC
                      ____________________________________________________________
consensus             GTCAAAGAAAAGCCAAATAGTTTGCAGGGTGCTGCTGTTCCATTCAAAGGCTCGATTTTC
 
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JMFS049C10+           TCATTCGTGAAGTGCGCCTCTCGAGAAAGGACCCAAACTGCCTACTCCAGAGGGCTCTGC
rJMSF025I18-          TCATTCGTGAAGTGCGTCTCTGGAGTAGGCAGTTTGGGTCCTTTCTCGAGAGGGCTCTGC
                      ____________________________________________________________
consensus             TCATTCGTGAAGTGCGTCTCTGGAGTAGGGAGTTTGGGTGCTTTCTCGAGAGGGCTCTGC
 
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JMFS049C10+           TCGTTTGCGTAATTTTGAACTATACGTTCTTCCCTCGTTGCTCCA               
rJMSF025I18-          TCGTTTGCGTAATTTTGAACTATACGTTCTTCCCTCGTTGCTCCACCACCTTGGATGGAG
                      ____________________________________________________________
consensus             TCGTTTGCGTAATTTTGAACTATACGTTCTTCCCTCGTTGCTCCACCACCTTGGATGGAG