Contig 008536:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF023G11Sequence627003958 (6)ref|XP_009778271.1|2e-49PREDICTED: autophagy-related protein 18a [Nicotiana sylvestris]724008536 (3)ref|XP_009778271.1|5e-86PREDICTED: autophagy-related protein 18a [Nicotiana sylvestris]
JMSF024G11Sequence141003958 (6)357008536 (3)ref|XP_009629097.1|3e-53PREDICTED: autophagy-related protein 18a [Nicotiana tomentosiformis]
JMSF042M08Sequence702003958 (6)ref|XP_009778271.1|2e-56PREDICTED: autophagy-related protein 18a [Nicotiana sylvestris]736008536 (3)ref|XP_009778271.1|5e-86PREDICTED: autophagy-related protein 18a [Nicotiana sylvestris]

Alignment

This contig is upended


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rJMSF042M08+             CAGAAGGGGCAAGTTAGGGTTGAACATTATGCTTCCAAGAAAACCAAGTTTATTATG
                      ____________________________________________________________
consensus                CAGAAGGGGCAAGTTAGGGTTGAACATTATGCTTCCAAGAAAACCAAGTTTATTATG
 
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rJMSF023G11+                                 TTTTGCACTCACAAACGATGGGAAGATGCTTGCAACT
rJMSF042M08+          GCACACTCCTCCAGGATAGCCTGTTTTGCACTCACAAACGATGGGAAGATGCTTGCAACT
                      ____________________________________________________________
consensus             GCACACTCCTCCAGGATAGCCTGTTTTGCACTCACAAACGATGGGAAGATGCTTGCAACT
 
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rJMSF023G11+          GCAAGCAGTAAAGGGACTCTCGTCAGAGTGTTCAATACTTTTGAAGGATCAATGTTGCAA
rJMSF042M08+          GCAAGCAGTAAAGGGACTCTCGTCAGAGTGTTCAATACTTTTGAAGGATCAATGTTGCAA
                      ____________________________________________________________
consensus             GCAAGCAGTAAAGGGACTCTCGTCAGAGTGTTCAATACTTTTGAAGGATCAATGTTGCAA
 
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rJMSF023G11+          GAGGTTAGGAGAGGTGCAGACAGGGCAGAGATTTAGTCTTGCTTTTAATTCAACTGCCCA
rJMSF042M08+          GAGGTTAGGAGAGGTGCAGACAGGGCAGAGATTTAGTCTTGCTTTTAATTCAACTGCCCA
                      ____________________________________________________________
consensus             GAGGTTAGGAGAGGTGCAGACAGGGCAGAGATTTAGTCTTGCTTTTAATTCAACTGCCCA
 
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rJMSF023G11+          CTGGCTAGCTGTTTCAAGTGATAAAGGAACCGTTCATGTGTTTAGCCTAAAGGCTGATTT
rJMSF042M08+          CTGGCTAGCTGTTTCAAGTGATAAAGGAACCGTTCATGTGTTTAGCCTAAAGGCTGATTT
rJMSF024G11+             GCTAGCTGTNTCAAGTGATAAAGGAACCGTTCATGTGTTTAGCCTAAAGGCTGNTTT
                      ____________________________________________________________
consensus             CTGGCTAGCTGTTTCAAGTGATAAAGGAACCGTTCATGTGTTTAGCCTAAAGGCTGATTT
 
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rJMSF023G11+          AGAATCAACAGGAGTTGAGAAAGCTCATGATCCATCTGAAACGAAAGAAACTACTTCACC
rJMSF042M08+          AGAATCAACAGGAGTTGAGAAAGCTCATGATCCATCTGAAACGAAAGAAACTACTTCACC
rJMSF024G11+          AGAATCANCAGGAGTTGAGAAAGCTCATGATCCATNTGAAACGAAAGAAACTACTTCACC
                      ____________________________________________________________
consensus             AGAATCAACAGGAGTTGAGAAAGCTCATGATCCATCTGAAACGAAAGAAACTACTTCACC
 
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rJMSF023G11+          AGGTGTTTCACAGCTCTCCTTCATCAAAGGTGTGCTACCAAAATATTTCAGTTCCGAGTG
rJMSF042M08+          AGGTGTTTCACAGCTCTCCTTCATCAAAGGTGTGCTACCAAAATATTTCAGTTCCGAGTG
rJMSF024G11+          AGGNGTNTCACAGCTNTCNTTCATCAAAGGTGTGCNACCAAAATATTTCAGTTCCGAGTG
                      ____________________________________________________________
consensus             AGGTGTTTCACAGCTCTCCTTCATCAAAGGTGTGCTACCAAAATATTTCAGTTCCGAGTG
 
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rJMSF023G11+          GTCTGTTGCCCAGTTCCGCTTGCAAGAAGGTTTGCAGCATATTGTTGCCTTTGGCCACCA
rJMSF042M08+          GTCTGTTGCCCAGTTCCGCTTGCAAGAAGGTTTGCAGCATATTGTTGCCTTTGGCCACCA
rJMSF024G11+          GTCTGTNGCCCAGTTCCGCTTGCAAGAAGGTTTGCAGCATATGGTTGCCTTTGGCCACCA
                      ____________________________________________________________
consensus             GTCTGTTGCCCAGTTCCGCTTGCAAGAAGGTTTGCAGCATATTGTTGCCTTTGGCCACCA
 
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rJMSF023G11+          AAAGAATACCATTGTGATACTTGGCATGGATGGCAGTTTCTACAGATGCCAGTTCAATGC
rJMSF042M08+          AAAGAATACCATTGTGATACTTGGCATGGATGGCAGTTTCTACAGATGCCAGTTCAATGC
rJMSF024G11+          AAAGAATACCATTGTGATACTTGGCATGGATGGCAGTTTCTACAGATGCCAGTTCAATGC
                      ____________________________________________________________
consensus             AAAGAATACCATTGTGATACTTGGCATGGATGGCAGTTTCTACAGATGCCAGTTCAATGC
 
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rJMSF023G11+          AGCAGAAGGTGGGGAGATGAGACTTCTTGAACATCA                        
rJMSF042M08+          AGCAGAAGGTGGGGAGATGAGACTTCTTGAACATCA                        
rJMSF024G11+          AGCAGAAGGTGGGGAGATGAGACTTCTTGAACATCACAACTTCTTGAAGCCTGAGGATAA
                      ____________________________________________________________
consensus             AGCAGAAGGTGGGGAGATGAGACTTCTTGAACATCACAACTTCTTGAAGCCTGAGGATAA