| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF023B21 | Sequence | 517 | 008532 (8) | gb|ABB83644.1| | 2e-58 | PIF-like transposase [Daucus carota] | 758 | 008532 (8) | ref|XP_010694029.1| | 278 | PREDICTED: uncharacterized protein LOC104906899 [Beta vulgaris subsp. vulgaris] |
| JMFF048K12 | Sequence | 351 | 008532 (8) | ref|XP_010687386.1| | 125 | PREDICTED: uncharacterized protein LOC104901495 [Beta vulgaris subsp. vulgaris] | 294 | 008532 (8) | gb|KJB83010.1| | 1e-17 | hypothetical protein B456_013G2249001, partial [Gossypium raimondii] |
| JMSF022B12 | Sequence | 626 | 008532 (8) | gb|ABB83644.1| | 2e-17 | PIF-like transposase [Daucus carota] | 806 | 008532 (8) | ref|XP_010694029.1| | 296 | PREDICTED: uncharacterized protein LOC104906899 [Beta vulgaris subsp. vulgaris] |
| JMSF024B06 | Sequence | 681 | 008532 (8) | ref|XP_010684719.1| | 109 | PREDICTED: uncharacterized protein LOC104899260 [Beta vulgaris subsp. vulgaris] | 769 | 008532 (8) | ref|XP_010694029.1| | 258 | PREDICTED: uncharacterized protein LOC104906899 [Beta vulgaris subsp. vulgaris] |
This contig is upended
. : . : . : . : . : . :
JMSF024B06- GGTGTCAATGGCCCGACTAAATACGCTCAGTCCATCTTGCACTTTCCTCTCTCTGTAT
____________________________________________________________
consensus GGTGTCAATGGCCCGACTAAATACGCTCAGTCCATCTTGCACTTTCCTCTCTCTGTAT
. : . : . : . : . : . :
JMSF024B06- TCTTGAACCCTCAATCTCCACGTACTGCGAGGAATAAGACTTTTACCTGTGCTCTTTCAC
____________________________________________________________
consensus TCTTGAACCCTCAATCTCCACGTACTGCGAGGAATAAGACTTTTACCTGTGCTCTTTCAC
. : . : . : . : . : . :
JMSF024B06- AAGTGTTTACCATGGATTCTGTAGAGTCTTCTGTGGGTTCTCGCTCAACCAGCAATTCAA
____________________________________________________________
consensus AAGTGTTTACCATGGATTCTGTAGAGTCTTCTGTGGGTTCTCGCTCAACCAGCAATTCAA
. : . : . : . : . : . :
JMSF022B12- AAAGATGAGC
JMSF024B06- AGGACATCAACACTACTGGTGGAACTCTTGCAAGGAGTCTAAAAAGGAAAAAAGATGAGC
____________________________________________________________
consensus AGGACATCAACACTACTGGTGGAACTCTTGCAAGGAGTCTAAAAAGGAAAAAAGATGAGC
. : . : . : . : . : . :
JMSF022B12- AGTGCCCAGATCTGAGAGAAGAGAGACTAGAGGAGAGTGAAGGGCGGCAGCGACAATGGC
JMSF024B06- AGTGCCCAGATCTGAGAGAAGAGAGACTAGAGGAGAGTGAAGGGCGGCAGCGACAATGGC
____________________________________________________________
consensus AGTGCCCAGATCTGAGAGAAGAGAGACTAGAGGAGAGTGAAGGGCGGCAGCGACAATGGC
. : . : . : . : . : . :
JMSF022B12- AAATGGGTATGGATAATAATGATATGAAAATTAGGCAACTTCTTCTCCTATATCTACAGT
JMSF024B06- AAATGGGTATGGATAATAATGATATGAAAATTAGGCAACTTCTTCTCCTATATCTACAGT
____________________________________________________________
consensus AAATGGGTATGGATAATAATGATATGAAAATTAGGCAACTTCTTCTCCTATATCTACAGT
. : . : . : . : . : . :
JMSF022B12- ACTTGAATAATGAGGATGAATTTTGGGATTTGGTAGCATGTGCGACTGGTTATATATGTA
JMSF024B06- ACTTGAATAATGAGGATGAATTTTGGGATTTGGTAGCATGTGCGACTGGTTATATATGTA
____________________________________________________________
consensus ACTTGAATAATGAGGATGAATTTTGGGATTTGGTAGCATGTGCGACTGGTTATATATGTA
. : . : . : . : . : . :
JMSF022B12- TCTATTTTTTGAATCATATGCACAAAGAATT--GCATGACTTCTTATTTAAGAGGAGAAA
JMSF024B06- TCTATTTTTTGAATCATATGCACAAAGAATTGCGCATGACTTCTTATTTAAGAGGAGAAA
JMFF048K12- AGAAA
JMFF023B21- AGAAA
____________________________________________________________
consensus TCTATTTTTTGAATCATATGCACAAAGAATTGCGCATGACTTCTTATTTAAGAGGAGAAA
. : . : . : . : . : . :
JMSF022B12- GAAGGATGAATGAATTATTGAACGGTTGTGAAGAAAGGTGTTTTAACACCTTTAGAATGA
JMSF024B06- GAAGGATGAATGAATTATTGAACGGTTGTGAAGAAAGGTGTTTTAACACCTTTAGAATGA
JMFF048K12- GAAGGATGAATGAATTATTGAACGGTTGTGAAGAAAGGTGTTTTAACACCTTTAGAATGA
JMFF023B21- GAAGGATGAATGAATTATTGAACGGTTGTGAAGAAAGGTGTTTTAACACCTTTAGAATGA
____________________________________________________________
consensus GAAGGATGAATGAATTATTGAACGGTTGTGAAGAAAGGTGTTTTAACACCTTTAGAATGA
. : . : . : . : . : . :
JMSF022B12- AGCAAAGTACATTTTGTCAATTATGTGTGGATTTGGAAAACAAGTATGGTTTGAGGTCTT
JMSF024B06- AGCAAAGTACATTTTGTCAATTATGTGTGGATTTGGAAAACAAGTATGGTTTGAGGTCTT
JMFF048K12- AGCAAAGTACATTTTGTCAATTATGTGTGGATTTGGAAAACAAGTATGGTTTGAGGTCTT
JMFF023B21- AGCAAAGTACATTTTGTCAATTATGTGTGGATTTGGAAAACAAGTATGGTTTGAGGTCTT
____________________________________________________________
consensus AGCAAAGTACATTTTGTCAATTATGTGTGGATTTGGAAAACAAGTATGGTTTGAGGTCTT
. : . : . : . : . : . :
JMSF022B12- CAAGTAGAATGTCAATTTTGGAGAAAGTGGGTTTGTTTGTATATCTACTTGGTATGGGTG
JMSF024B06- CAAGTAGAATGTCAATTTTGGAGAAAGTGGGTTTGTTTGTATATCTACTTGGTATGGGTG
JMFF048K12- CAAGTAGAATGTCAATTTTGGAGAAAGTGGGTTTGTTTGTATATCTACTTGGTATGGGTG
JMFF023B21- CAAGTAGAATGTCAATTTTGGAGAAAGTGGGTTTGTTTGTATATCTACTTGGTATGGGTG
____________________________________________________________
consensus CAAGTAGAATGTCAATTTTGGAGAAAGTGGGTTTGTTTGTATATCTACTTGGTATGGGTG
. : . : . : . : . : . :
JMSF022B12- CTTCTAAT
JMSF024B06- CTTCTAATAGAGATGTGGAAGAG
JMFF048K12- CTTCTAATAGAGATGTGGAAGAGCGCTTTCAACGTTCCAGTAAAACTATTAGTAGAACTT
JMFF023B21- CTTCTAATAGAGATGTGGAAGAGCGCTTTCAACGTTCCAGTAAAACTATTAGTAGAACTT
____________________________________________________________
consensus CTTCTAATAGAGATGTGGAAGAGCGCTTTCAACGTTCCAGTAAAACTATTAGTAGAACTT
. : . : . : . : . : . :
JMFF048K12- TTAGAGAAGTTCTGAATGCTATGGATGGTTTTTCAAGAGACATACTTGTACCAAAAGATC
JMFF023B21- TTAGAGAAGTTCTGAATGCTATGGATGGTTTTTCAAGAGACATACTTGTACCAAAAGATC
rJMSF022B12+ TTTTCAAGAGACATACNTGTACCAAAAGATC
____________________________________________________________
consensus TTAGAGAAGTTCTGAATGCTATGGATGGTTTTTCAAGAGACATACTTGTACCAAAAGATC
. : . : . : . : . : . :
JMFF048K12- CCGAGTTGAAGGAAATTCCACCACAAATTGTCAATGATGCT
JMFF023B21- CCGAGTTGAAGGAAATTCCACCACAAATTGTCAATGATGCTAGATATATGCCACATTTTA
rJMSF022B12+ CCGAGTTGGAGGAAATTCCACCACAAATTGTCAATGATGCTAGATATATGCCACATTTTA
rJMFF023B21+ TGTCAATGATGCTAGATATATGCCACATTTTA
____________________________________________________________
consensus CCGAGTTGAAGGAAATTCCACCACAAATTGTCAATGATGCTAGATATATGCCACATTTTA
. : . : . : . : . : . :
JMFF023B21- AGGATTGTGTTGGAGCAATAGATGGTACACATATTGCGATAAACGTTCCTGAAGAGAATC
rJMSF022B12+ AGGATTGTGTTGGAGCAATAGATGGTACACATATTGCGATAAACGTTCCTGAAGAGAATC
rJMFF023B21+ AGGATTGTGTTGGAGCAATAGATGGTACACATATTGCGATAAACGTTCCTGAAGAGAATC
rJMSF024B06+ GGAGCNATAGATGGTACACATATTGCGATAAACGTTCCTGAAGAGAATC
____________________________________________________________
consensus AGGATTGTGTTGGAGCAATAGATGGTACACATATTGCGATAAACGTTCCTGAAGAGAATC
. : . : . : . : . : . :
JMFF023B21- AAATACATTATATAGGGAAGAAAGGAATACCAACTACAAATGTCTTGGCAGCATGTGACT
rJMSF022B12+ AAATACATTATATAGGGAAGAAAGGAATACCAACTACAAATGTCTTGGCAGCATGTGACT
rJMFF023B21+ AAATACATTATATAGGGAAGAAAGGAATACCAACTACAAATGTCTTGGCAGCATGTGACT
rJMSF024B06+ AAATACATTATATAGGGAAGAAAGGAATACCAACTACAAATGTCTNGGCAGCATGTGACT
____________________________________________________________
consensus AAATACATTATATAGGGAAGAAAGGAATACCAACTACAAATGTCTTGGCAGCATGTGACT
. : . : . : . : . : . :
JMFF023B21- TTGGTTTGCTATTTACATACGTTTTAA
rJMSF022B12+ TTGGTTTGCTATTTACATACGTTTTAACGGGATGGGAGGGATCAGTTCATGATTCTTGCA
rJMFF023B21+ TTGGTTTGCTATTTACATACGTTTTAACGGGATGGGAGGGATCAGTTCATGATTCTTGCA
rJMSF024B06+ TTGGTTTGCTATTTACATACGTTTTAACGGGATGGGAGGGATCAGTTCATGATTCTTGCA
____________________________________________________________
consensus TTGGTTTGCTATTTACATACGTTTTAACGGGATGGGAGGGATCAGTTCATGATTCTTGCA
. : . : . : . : . : . :
rJMSF022B12+ TTTTTCTTGACACAATCAGTGATTCATCTCTCAACTTTCCAAAGCCACCACTAGGTAAGT
rJMFF023B21+ TTTTTCTTGACACAATCAGTGATTCATCTCTCAACTTTCCAAAGCCACCACTAGGTAAGT
rJMSF024B06+ TTTTTCTTGACACAATCAGTGATTCATCTCTCAACTTTCCAAAGCCACCACTAGGTAAGT
____________________________________________________________
consensus TTTTTCTTGACACAATCAGTGATTCATCTCTCAACTTTCCAAAGCCACCACTAGGTAAGT
. : . : . : . : . : . :
rJMSF022B12+ ATTATTTGGTGGACAAAGACTATCCAGAAAGTGAAGGGTATTTGACACCTTACCCCAAGA
rJMFF023B21+ ATTATTTGGTGGACAAAGACTATCCAGAAAGTGAAGGGTATTTGACACCTTACCCCAAGA
rJMSF024B06+ ATTATTTGGTGGACAAAGACTATCCAGAAAGTGAAGGGTATTTGACACCTTACCCCAAGA
____________________________________________________________
consensus ATTATTTGGTGGACAAAGACTATCCAGAAAGTGAAGGGTATTTGACACCTTACCCCAAGA
. : . : . : . : . : . :
rJMSF022B12+ CAAGGTATCATCAATTGAAGTTTCATGATTCAAATCCAAAGGAATCTCAAGAAGTATTTA
rJMFF023B21+ CAAGGTATCATCAATTGAAGTTTCATGATTCAAATCCAAAGGAATCTCAAGAAGTATTTA
rJMSF024B06+ CAAGGTATCATCAATTGAAGTTTCATGATTCAAATCCAAAGGAATCTCAAGAAGTATTTA
____________________________________________________________
consensus CAAGGTATCATCAATTGAAGTTTCATGATTCAAATCCAAAGGAATCTCAAGAAGTATTTA
. : . : . : . : . : . :
rJMSF022B12+ ATCAAGCACATGCATCCTTAAGAAGCTGTATTGAGAAGGCTTTTGGTGTTCTCAAGTCTC
rJMFF023B21+ ATCAAGCACATGCATCCTTAAGAAGCTGTATTGAGAAGGCTTTTGGTGTTCTCAAGTCTC
rJMSF024B06+ ATCAAGCACATGCATCCTTAAGAAGCTGTATTGAGAAGGCTTTTGGTGTTCTCAAGTCTC
____________________________________________________________
consensus ATCAAGCACATGCATCCTTAAGAAGCTGTATTGAGAAGGCTTTTGGTGTTCTCAAGTCTC
. : . : . : . : . : . :
rJMSF022B12+ GATGGAAGATATTACAAAAAATGCCAAGATACTCACTAATGGATCAAAATAGAATAATTT
rJMFF023B21+ GATGGAAGATATTACAAAAAATGCCAAGATACTCACTAATGGATCAAAATAGAATAATTT
rJMFF048K12+ CAAAATAGAATAATTT
rJMSF024B06+ GATGGAAGATATTACAAAAAATGCCAAGATACTCACTAATGGATCAAAATAGAATAATTT
____________________________________________________________
consensus GATGGAAGATATTACAAAAAATGCCAAGATACTCACTAATGGATCAAAATAGAATAATTT
. : . : . : . : . : . :
rJMSF022B12+ GTTCGTGTTTTGCATTGCACAACTACATTAGAAAAAACACAGTTGATGACCCGGGTTTTA
rJMFF023B21+ GTTCGTGTTTTGCATTGCGCAACTACATTAGAAAAAACACAGTTGATGACCCGGGTTTTA
rJMFF048K12+ GTTCGTGTTTTGCATTGCGCAACTACATTAGAAAAAACACAGTTGATGACCCGGGTTTTA
rJMSF024B06+ GTTCGTGTTTTGCATTGCACAACTACATTAGAAAAAACACAGTTGATGACCCGGGTTTTA
____________________________________________________________
consensus GTTCGTGTTTTGCATTGCGCAACTACATTAGAAAAAACACAGTTGATGACCCGGGTTTTA
. : . : . : . : . : . :
rJMSF022B12+ GATTCATTGAAGAAAATCCTAAGTTCATTCCCCCTGATGTTTTTCAAGATGTTGAAGTTA
rJMFF023B21+ GATTCATTGAAGAAAATCCTAAGTTCATTCCCCCTGATGTTTTTCAAGATGTTGAAGTTA
rJMFF048K12+ GATTCATTGAAGAAAATCCTAAGTTCATTCCCCCTGATGTTTTTCAAGATGTTGAAGTTA
rJMSF024B06+ GATTCATTGAAGAAAATCCTAAGTTCATTCCCCCTGATGTTTTTCAAGATGTTGAAGTTA
____________________________________________________________
consensus GATTCATTGAAGAAAATCCTAAGTTCATTCCCCCTGATGTTTTTCAAGATGTTGAAGTTA
. : . : . : . : . : . :
rJMSF022B12+ ATTCTGTACAAATTCCGGAGGAAATGGAAACTCAGGAGATGGCAACTATTCGTGATAACA
rJMFF023B21+ ATTCTGTACAAATTCCGGAGGAAATGGAAACTCAGGAGATGGCAACTATTCGTGATAACA
rJMFF048K12+ ATTCTGTACAAATTCCGGAGGAAATGGAAACTCAGGAGATGGCAACTATTCGTGATAACA
rJMSF024B06+ ATTCTGTACAAATTCCGGAGGAAATGGAAACTCAGGAGATGGCAACTATTCGTGATAACA
____________________________________________________________
consensus ATTCTGTACAAATTCCGGAGGAAATGGAAACTCAGGAGATGGCAACTATTCGTGATAACA
. : . : . : . : . : . :
rJMSF022B12+ TTGCTTCAAGTTTGATGGCAGCTAGATGTCATTCTTAGTGTAATATCAATATTT
rJMFF023B21+ TTGCTTCAAGTTTGATGGCAGCTAGATGTCATTCTTAGTGTAATATCAATATTT
rJMFF048K12+ TTGCTTCAAGTTTGATGGCAGCTAGATGTCATTCTTAGTGTAATATCAATATTTTGTAAA
rJMSF024B06+ TTGCTTCAAGTTTGATGGCAGCTAGATGTCATTCTTAGTGTAATATCAATATTTTGTAAA
____________________________________________________________
consensus TTGCTTCAAGTTTGATGGCAGCTAGATGTCATTCTTAGTGTAATATCAATATTTTGTAAA
. : . : . : . : . : . :
rJMFF048K12+ TAGTAGTGTTAATTATTGTGGTGGATCTCATCCCTAGT
rJMSF024B06+ TAGTAGTGTTAATTATTGTGGTGGATCTCATCCCTAGTAATTGTTTGTGTTGGTATGTGT
____________________________________________________________
consensus TAGTAGTGTTAATTATTGTGGTGGATCTCATCCCTAGTAATTGTTTGTGTTGGTATGTGT