Contig 008529:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF010L09Sequence479008529 (3)ref|XP_010101526.1|2e-85putative ATP-dependent RNA helicase DHX35 [Morus notabilis] gb|EXB88538.1| putat772008529 (3)ref|XP_009791074.1|1e-118PREDICTED: probable ATP-dependent RNA helicase DHX35 [Nicotiana sylvestris]
JMSF023M03Sequence660024176ref|XP_009791074.1|3e-99PREDICTED: probable ATP-dependent RNA helicase DHX35 [Nicotiana sylvestris]679008529 (3)emb|CDO96735.1|6e-36unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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JMSF010L09-                                                 GTTTTGTTCTACTTTACTTAAG
                      ____________________________________________________________
consensus                                                   GTTTTGTTCTACTTTACTTAAG
 
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JMSF010L09-           ATTTCAGACATTGAGAATTTAATAGTGGCCCCCATATCCAAGGCTTCAGCTCGACAAAGG
                      ____________________________________________________________
consensus             ATTTCAGACATTGAGAATTTAATAGTGGCCCCCATATCCAAGGCTTCAGCTCGACAAAGG
 
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JMSF010L09-           GCTGGTAGAGCTGGAAGAGTTCGACCTGGAAAATGTTTCAGGCTCTATACTGAAGAATAT
                      ____________________________________________________________
consensus             GCTGGTAGAGCTGGAAGAGTTCGACCTGGAAAATGTTTCAGGCTCTATACTGAAGAATAT
 
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JMSF010L09-           TTCTTAAATGAGATGTCTACCCAGGGAATTCCTGAGATACAGAGATCAAGCCTTGTTTCA
                      ____________________________________________________________
consensus             TTCTTAAATGAGATGTCTACCCAGGGAATTCCTGAGATACAGAGATCAAGCCTTGTTTCA
 
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JMSF010L09-           TGTGTTATTCAGTTAAAGGCCTTGGGCATTGACAATATATTAGGGTTTGATTGGCCTGCA
                      ____________________________________________________________
consensus             TGTGTTATTCAGTTAAAGGCCTTGGGCATTGACAATATATTAGGGTTTGATTGGCCTGCA
 
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JMSF010L09-           TCTCCATCACCTGAAGCAATGATTAGAGCACTTGAGATATTGTACTCACTTGGAGTACTT
                      ____________________________________________________________
consensus             TCTCCATCACCTGAAGCAATGATTAGAGCACTTGAGATATTGTACTCACTTGGAGTACTT
 
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JMSF010L09-           GATGATGATGCTAAACTCACTTCACCTGCTGGATTTCAAGTTGCTGAGATTCCATTAGAC
                      ____________________________________________________________
consensus             GATGATGATGCTAAACTCACTTCACCTGCTGGATTTCAAGTTGCTGAGATTCCATTAGAC
 
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JMSF010L09-           CCAATGATCTCGAAGATGATCTTGGCTTCAAGTGAATCTGGATGTTCTGAGGAAATTATT
rJMSF010L09+                                TGGCNTCAAGNGAATCNGGATGTTCTGAGGAAATTATT
                      ____________________________________________________________
consensus             CCAATGATCTCGAAGATGATCTTGGCTTCAAGTGAATCTGGATGTTCTGAGGAAATTATT
 
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JMSF010L09-           ACCATTGCTGCGGTTCTCTCAATACAGTCCATCTGGA                       
rJMSF010L09+          ACCATTGCTGCGGTTCTCTCAATACAGTCCATCTGGATTTCCCTGAGGGGAGTACAAAAG
                      ____________________________________________________________
consensus             ACCATTGCTGCGGTTCTCTCAATACAGTCCATCTGGATTTCCCTGAGGGGAGTACAAAAG
 
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rJMSF010L09+          GAAATGGATGAAGCGAAGTTGAGATTTGCTGCAGCTGAGGGTGATCATGTCACTTTCTTA
                      ____________________________________________________________
consensus             GAAATGGATGAAGCGAAGTTGAGATTTGCTGCAGCTGAGGGTGATCATGTCACTTTCTTA
 
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rJMSF010L09+          AATGTGTACAAAGGATTCATTCAGTCAAATAAATCTTCAAAGTGGTGTCAGAAGAATTTT
                      ____________________________________________________________
consensus             AATGTGTACAAAGGATTCATTCAGTCAAATAAATCTTCAAAGTGGTGTCAGAAGAATTTT
 
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rJMSF010L09+          ATTAACTATCATGCCATGAAAAAGGTTATGGAAGTTAGGGAACAACTAAGAAGGATTGTG
                      ____________________________________________________________
consensus             ATTAACTATCATGCCATGAAAAAGGTTATGGAAGTTAGGGAACAACTAAGAAGGATTGTG
 
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rJMSF010L09+          CTGCGCTTGGGCTTAAGTCTGAAATCTTGTGAAGGGGACATGCAGGCAGTAAGGAAAGCA
                      ____________________________________________________________
consensus             CTGCGCTTGGGCTTAAGTCTGAAATCTTGTGAAGGGGACATGCAGGCAGTAAGGAAAGCA
 
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rJMSF010L09+          ATTACAATGGGATTTTTTGCTAATGCTTGTCGTTTAGAAGCATTCAGCCACAATGGCATG
rJMSF023M03+                                                   ATTCAGCCACAATGGCATG
                      ____________________________________________________________
consensus             ATTACAATGGGATTTTTTGCTAATGCTTGTCGTTTAGAAGCATTCAGCCACAATGGCATG
 
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rJMSF010L09+          TACAAGACTGTCAGAGGTTCTCAAGAAGTTTATATTCATCCTTCATCTATTTTATTCAGG
rJMSF023M03+          TACAAGACTGTCAGAGGTTCTCAAGAAGTTTATATTCATCCTTCATCTATCTTATTCAGG
                      ____________________________________________________________
consensus             TACAAGACTGTCAGAGGTTCTCAAGAAGTTTATATTCATCCTTCATCTATTTTATTCAGG
 
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rJMSF010L09+          GTCAACCCGAAGTGGGTGATATACCAATCTCTTGTTTCAACTGATCGTCAGTACATGCGC
rJMSF023M03+          GTCAACCCGAAGTGGGTGATATACCAATCTCTTGTTTCAACTGATCGTCAGTACATGCGC
                      ____________________________________________________________
consensus             GTCAACCCGAAGTGGGTGATATACCAATCTCTTGTTTCAACTGATCGTCAGTACATGCGC
 
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rJMSF010L09+          AATGTCATTTCCATAGATCCTTCTTGGTTGCGAGAGGCAGCTCCGCACTTCTACCAACCT
rJMSF023M03+          AATGTCATTTCCATAGATCCTTCTTGGTTGCGAGAGGCAGCTCCGCACTTCTACCAACCT
                      ____________________________________________________________
consensus             AATGTCATTTCCATAGATCCTTCTTGGTTGCGAGAGGCAGCTCCGCACTTCTACCAACCT
 
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rJMSF010L09+          CAACACCCCAATTCTATCCCTCGCTGATTCGTCTCCTCTTTCTTACTCCCAGAAAGTTAG
rJMSF023M03+          CAACACCCCAATTCTATCCCTCGTTGATTCGTCTCCTCTTTCTTACTCCCAGAAAGTTAG
                      ____________________________________________________________
consensus             CAACACCCCAATTCTATCCCTCGTTGATTCGTCTCCTCTTTCTTACTCCCAGAAAGTTAG
 
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rJMSF010L09+          CCTGATATTGTATATGCATTAGCTGAG                                 
rJMSF023M03+          CCTGATATTGTATATGCATTAGCTGAGTTCATGGATGGTCATTGGAATGTCTCTGCCTGA
                      ____________________________________________________________
consensus             CCTGATATTGTATATGCATTAGCTGAGTTCATGGATGGTCATTGGAATGTCTCTGCCTGA
 
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rJMSF023M03+          GCCTTGAAGTAGATATAGTATTCACTTTGAGTGATGAGGAGAACCCGCAGCCACTATTTG
                      ____________________________________________________________
consensus             GCCTTGAAGTAGATATAGTATTCACTTTGAGTGATGAGGAGAACCCGCAGCCACTATTTG
 
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rJMSF023M03+          AGGATGTACACCGAGTAAACTCACATTTTGACCTTAGTTGACAAAGGATCACAATGAGGT
                      ____________________________________________________________
consensus             AGGATGTACACCGAGTAAACTCACATTTTGACCTTAGTTGACAAAGGATCACAATGAGGT
 
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rJMSF023M03+          AAATCAGCTTAGGTTGTCTATAGCCGCGATCTGCTCAAACCAAGAATGCTAATAGACCAC
                      ____________________________________________________________
consensus             AAATCAGCTTAGGTTGTCTATAGCCGCGATCTGCTCAAACCAAGAATGCTAATAGACCAC
 
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rJMSF023M03+          TCTTGTTGAGAGTTAAACTTGTAACCTTGTGATTATTAAGTCAACAACTTAATCAACTTG
                      ____________________________________________________________
consensus             TCTTGTTGAGAGTTAAACTTGTAACCTTGTGATTATTAAGTCAACAACTTAATCAACTTG
 
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rJMSF023M03+          GTCAGGGTTGTCCCCTATAATTTTCACCTTTTAGTTCTTGGTACTTGGTAGAAGTTTTGG
                      ____________________________________________________________
consensus             GTCAGGGTTGTCCCCTATAATTTTCACCTTTTAGTTCTTGGTACTTGGTAGAAGTTTTGG
 
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rJMSF023M03+          GTCCATTTTGTAGGTTTCTTTTTTTGGTACAAAATCATGTACTTATAAATTATTGATATC
                      ____________________________________________________________
consensus             GTCCATTTTGTAGGTTTCTTTTTTTGGTACAAAATCATGTACTTATAAATTATTGATATC