Contig 008525:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF009P18Sequence257003573 (3)604008525 (3)gb|ACF17661.1|4e-64putative 3-oxoacyl-(acyl-carrier-protein) synthase III [Capsicum annuum]
JMSF023C03Sequence660003573 (3)gb|ACU23133.1|6e-48unknown [Glycine max]803008525 (3)gb|ACF17661.1|2e-103putative 3-oxoacyl-(acyl-carrier-protein) synthase III [Capsicum annuum]
JMSF023D06Sequence634003573 (3)gb|ACU23133.1|2e-37unknown [Glycine max]792008525 (3)gb|ACF17661.1|2e-101putative 3-oxoacyl-(acyl-carrier-protein) synthase III [Capsicum annuum]

Alignment

This contig is upended


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rJMSF023C03+                                              CTAGTGCAGGCCTGTGACATTGCA
rJMSF023D06+                                                          TGTGACATTGCA
                      ____________________________________________________________
consensus                                                 CTAGTGCAGGCCTGTGACATTGCA
 
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rJMSF023C03+          GAAGATGGTTTATTCGCTTTCGACTTGCATAGTGATGGTGAGGGTCAAAGGCACTTAAAT
rJMSF023D06+          GAAGATGGTTTATTCGCTTTCGACTTGCATAGTGATGGTGAGGGTCAAAGGCACTTAAAT
                      ____________________________________________________________
consensus             GAAGATGGTTTATTCGCTTTCGACTTGCATAGTGATGGTGAGGGTCAAAGGCACTTAAAT
 
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rJMSF023C03+          GCTTCTCTAAAAGAGAACGAAACAGATAAAAAAGTGGGAACAAATGGTTCACTAATTGGT
rJMSF023D06+          GCTTCTTTAAAAGAGAACGAAACAGATAAAAAAGTGGGAACAAATGGTTCACTAATTGGT
                      ____________________________________________________________
consensus             GCTTCTTTAAAAGAGAACGAAACAGATAAAAAAGTGGGAACAAATGGTTCACTAATTGGT
 
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rJMSF009P18+                                  TCCTGCATTCAAATGAATGGTAAGGAGGTCTTCAGG
rJMSF023C03+          TTCCCACCAAAAAGCTCCAACTTTTCCTGCATTCAAATGAATGGTAAGGAGGTCTTCAGG
rJMSF023D06+          TTCCCACCAAAAAGCTCCAACTTTTCCTGCATTCAAATGAATGGTAAGGAGGTCTTCAGG
                      ____________________________________________________________
consensus             TTCCCACCAAAAAGCTCCAACTTTTCCTGCATTCAAATGAATGGTAAGGAGGTCTTCAGG
 
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rJMSF009P18+          TTTGNTGTTCGAGTTGTGCCGCAGTCCATTGAAGCTTCCTTACAGAAAGCCGGTCTGACT
rJMSF023C03+          TTTGCTGTTCGAGTTGTGCCGCAGTCCATTGAAGCTTCCTTACAGAAAGCCGGTCTGACT
rJMSF023D06+          TTTGCTGTTCGAGTTGTGCCGCAGTCCATTGAAGCTTCCTTACAGAAAGCCGGTCTGACT
                      ____________________________________________________________
consensus             TTTGCTGTTCGAGTTGTGCCGCAGTCCATTGAAGCTTCCTTACAGAAAGCCGGTCTGACT
 
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rJMSF009P18+          AACTCCANCATTGATTGGTTACTTNTCCATCAGGCAAACCAAAGGATTATTGATGCAGTG
rJMSF023C03+          AACTCCAGCATTGATTGGTTACTTCTCCATCAGGCAAACCAAAGGATTATTGATGCAGTG
rJMSF023D06+          AACTCCAGCATTGATTGGTTACTTCTCCATCAGGCAAACCAAAGGATTATTGATGCAGTG
                      ____________________________________________________________
consensus             AACTCCAGCATTGATTGGTTACTTCTCCATCAGGCAAACCAAAGGATTATTGATGCAGTG
 
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rJMSF009P18+          GCAACGCGTTTGGATATCCCATCCGAACACGTGATATCAAATTTGTCCAACTATGGCAAT
rJMSF023C03+          GCAACGCGTTTGGATATCCCATCCGAACACGTGATATCAAATTTGTCCAACTATGGCAAT
rJMSF023D06+          GCAACGCGTTTGGATATCCCATCCGAACACGTGATATCAAATTTGTCCAACTATGGCAAT
                      ____________________________________________________________
consensus             GCAACGCGTTTGGATATCCCATCCGAACACGTGATATCAAATTTGTCCAACTATGGCAAT
 
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rJMSF009P18+          ACTAGTGCTGCTTCCATCCCATTGGCATTGGACGAAGCTGTTCGCAGCGGAAAAGTTCAG
rJMSF023C03+          ACTAGTGCTGCTTCCATCCCATTGGCATTGGACGAAGCTGTTCGCAGCGGAAAAGTTCAG
rJMSF023D06+          ACTAGTGCTGCTTCCATCCCATTGGCATTGGACGAAGCTGTTCGCAGCGGAAAAGTTCAG
                      ____________________________________________________________
consensus             ACTAGTGCTGCTTCCATCCCATTGGCATTGGACGAAGCTGTTCGCAGCGGAAAAGTTCAG
 
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rJMSF009P18+          GCGGGCCATACAATCGCTGNTGCTGGGTTCGGTGCTGGTCTTACGTGGGGCTCTGCCATC
rJMSF023C03+          GCGGGCCATACAATCGCTGCTGCTGGGTTCGGTGCTGGTCTTACGTGGGGCTCTGCCATC
rJMSF023D06+          GCGGGCCATACAATCGCTGCTGCTGGGTTCGGTGCTGGTCTTACGTGGGGCTCTGCCATC
                      ____________________________________________________________
consensus             GCGGGCCATACAATCGCTGCTGCTGGGTTCGGTGCTGGTCTTACGTGGGGCTCTGCCATC
 
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rJMSF009P18+          ATGAGATGGGGANGAACCTACAACGTGTTGATGGGCGGTGTATAATATCGAGAGGTGGTT
rJMSF023C03+          ATGAGATGGGGATGAACCTACAACGTGTTGATGGGCGGTGTATAATATCGAGAGGTGGTT
rJMSF023D06+          ATGAGATGGGGATGAACCTACAACGTGTTGATGGGCGGTGTATAATATCGAGAGGTGGTT
                      ____________________________________________________________
consensus             ATGAGATGGGGATGAACCTACAACGTGTTGATGGGCGGTGTATAATATCGAGAGGTGGTT
 
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rJMSF009P18+          GATAATTTTGTGCCTTTTAGATTAGCCTGCCTTGTCACTGTGAAGCTTCAACATGAATTT
rJMSF023C03+          GATAATTTTGTGCCTTTTAGATTAGCCTGCCTTGTCACTGTGAAGCTTCAACATGAATTT
rJMSF023D06+          GATAATTTTGTGCCTTTTAGATTAGCCTGCCTTGTCACTGTGAAGCTTCAACATGAATTT
                      ____________________________________________________________
consensus             GATAATTTTGTGCCTTTTAGATTAGCCTGCCTTGTCACTGTGAAGCTTCAACATGAATTT
 
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rJMSF009P18+          TTCATCGCAATTTCATTCTGCATTAAATTTGACCGGTTTCAATAAAATCTCATGCATTCC
rJMSF023C03+          TTCATCGCAATTTCATTCTGCATTAAATTTGACCGGTTTCAATAAAATCTCATGCATTCC
rJMSF023D06+          TTCATCGCAATTTCATTCTGCATTAAATTTGACCGGTTTCAATAAAATCTCATGCATTCC
                      ____________________________________________________________
consensus             TTCATCGCAATTTCATTCTGCATTAAATTTGACCGGTTTCAATAAAATCTCATGCATTCC
 
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rJMSF009P18+          CCTCACTTGTGTTGTCATTGCATTATTGAACACTTGAACCCCTTTGAGTAGAATAGAAGA
rJMSF023C03+          CCTCACTTGTGTTGTCATTGCATTATTGAACACTTGAACCCCTTTGAGTAGAATAGAAGA
rJMSF023D06+          CCTCACTTGTGTTGTCATTGCATTATTGAATACTTGAACCCCTTTGAGTAGAATAGAAGA
                      ____________________________________________________________
consensus             CCTCACTTGTGTTGTCATTGCATTATTGAACACTTGAACCCCTTTGAGTAGAATAGAAGA
 
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rJMSF009P18+          AGATATCAATTATGTAATTTT                                       
rJMSF023C03+          AGATATCAATTATGTAATTTTTGGCTTTGAACTCACATTCTTTAATTTGTGTAAGAATA 
rJMSF023D06+          AGATATCAATTATGTAATTTTTGGCTTTGAACTCACATTCTTTAATTTGTGTAAGAATAT
                      ____________________________________________________________
consensus             AGATATCAATTATGTAATTTTTGGCTTTGAACTCACATTCTTTAATTTGTGTAAGAATAT