Contig 008522:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF022F02Sequence663008522 (2)ref|XP_002443916.1|3e-112hypothetical protein SORBIDRAFT_07g004310 [Sorghum bicolor] gb|EES13411.1| hypot736008522 (2)ref|XP_002443916.1|8e-93hypothetical protein SORBIDRAFT_07g004310 [Sorghum bicolor] gb|EES13411.1| hypot

Alignment

This contig is upended


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JMSF022F02-                                                                   CAGG
                      ____________________________________________________________
consensus                                                                     CAGG
 
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JMSF022F02-           AGAGGACATTAATGAATGGCTTGCTGTCAACACTGTTGATTTCTTCAACCAAGTAAATCT
                      ____________________________________________________________
consensus             AGAGGACATTAATGAATGGCTTGCTGTCAACACTGTTGATTTCTTCAACCAAGTAAATCT
 
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JMSF022F02-           TCTGTTTGGAACCCTCACAGAGTTTTGCACACCAGAGAACTGTCCTACAATGGCAGCAGG
rJMSF022F02+                     CCCTCACAGAGTTTTGCACACCAGAGAACTGTCCTACAATGGCAGCAGG
                      ____________________________________________________________
consensus             TCTGTTTGGAACCCTCACAGAGTTTTGCACACCAGAGAACTGTCCTACAATGGCAGCAGG
 
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JMSF022F02-           TCCCAAGTATGAATATAGGTGGGCTGATGGTGTGCAAATAAAAAAACCTATTGAAGTTTC
rJMSF022F02+          TCCCAAGTATGAATATAGGTGGGCTGATGGTGTGCAAATAAAAAAACCTATTGAAGTTTC
                      ____________________________________________________________
consensus             TCCCAAGTATGAATATAGGTGGGCTGATGGTGTGCAAATAAAAAAACCTATTGAAGTTTC
 
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JMSF022F02-           TGCACCAAAATATGTTGAATATTTAATGGATTGGATTGAGGGTCAGCTAGATGATGAATC
rJMSF022F02+          TGCACCAAAATATGTTGAATATTTAATGGATTGGATTGAGGGTCAGCTAGATGATGAATC
                      ____________________________________________________________
consensus             TGCACCAAAATATGTTGAATATTTAATGGATTGGATTGAGGGTCAGCTAGATGATGAATC
 
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JMSF022F02-           TATATTTCCTCAAAGGCTTGGTGCACCATTTCCATCCAACTTCAAGGAAGTTGTGAAGAC
rJMSF022F02+          TATATTTCCTCAAAGGCTTGGTGCACCATTTCCATCCAACTTCAAGGAAGTTGTGAAGAC
                      ____________________________________________________________
consensus             TATATTTCCTCAAAGGCTTGGTGCACCATTTCCATCCAACTTCAAGGAAGTTGTGAAGAC
 
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JMSF022F02-           AATATTCAAACGCCTGCTTCGTGTATATGCTCATATTTATCACACCCATTTTCAAAAGAT
rJMSF022F02+          AATATTCAAACGCCTGCTTCGTGTATATGCTCATATTTATCACACCCATTTTCAAAAGAT
                      ____________________________________________________________
consensus             AATATTCAAACGCCTGCTTCGTGTATATGCTCATATTTATCACACCCATTTTCAAAAGAT
 
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JMSF022F02-           TGTGAGTCTCAAGGAGGAGGCCCATCTAAATACCTGCTTCAAACATTTCACACTATTTAC
rJMSF022F02+          TGTGAGTCTCAAGGAGGAGGCCCATCTAAATACCTGCTTCAAACATTTCACACTATTTAC
                      ____________________________________________________________
consensus             TGTGAGTCTCAAGGAGGAGGCCCATCTAAATACCTGCTTCAAACATTTCACACTATTTAC
 
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JMSF022F02-           CAATGAATTTGGGCTGATAGACAAGAAGGAGCTTGCTCCACTCCAAGAGCTGATAGAGTC
rJMSF022F02+          CAATGAATTTGGGCTGATAGACAAGAAGGAGCTTGCTCCACTCCAAGAGCTGATAGAGTC
                      ____________________________________________________________
consensus             CAATGAATTTGGGCTGATAGACAAGAAGGAGCTTGCTCCACTCCAAGAGCTGATAGAGTC
 
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JMSF022F02-           TATTATTGCCCCTTATTGAG                                        
rJMSF022F02+          TATTATTGCCCCTTATTGAGCATGCCCTCGACTTTATTTTCCTTGAAAAATGAATTGCTA
                      ____________________________________________________________
consensus             TATTATTGCCCCTTATTGAGCATGCCCTCGACTTTATTTTCCTTGAAAAATGAATTGCTA
 
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rJMSF022F02+          GAGATTAAATGCATCTCATCATGTAATAAAAATGTCAAATAGATATTGAAATATAGCTAA
                      ____________________________________________________________
consensus             GAGATTAAATGCATCTCATCATGTAATAAAAATGTCAAATAGATATTGAAATATAGCTAA
 
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rJMSF022F02+          TTTATCCCTTTTTCCCCAACTAATGTTCCCTGCATGACTAAAAAATGTCCATATAGTAGC
                      ____________________________________________________________
consensus             TTTATCCCTTTTTCCCCAACTAATGTTCCCTGCATGACTAAAAAATGTCCATATAGTAGC
 
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rJMSF022F02+          CGCCATTGGAAGGAGCTAATGTGTATATCATTGGTGTAATGAATGTATCATTGACGGAAT
                      ____________________________________________________________
consensus             CGCCATTGGAAGGAGCTAATGTGTATATCATTGGTGTAATGAATGTATCATTGACGGAAT
 
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rJMSF022F02+          GTGTATCTTAGATTGTAAGTGAATGCTCTATTTAAACGTTTGATGTGTAATAGAGAATGT
                      ____________________________________________________________
consensus             GTGTATCTTAGATTGTAAGTGAATGCTCTATTTAAACGTTTGATGTGTAATAGAGAATGT