Contig 008521:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF022E07Sequence614015743ref|XP_009777127.1|4e-18PREDICTED: uncharacterized protein LOC104226766 isoform X1 [Nicotiana sylvestri842008521 (3)emb|CDP14924.1|6e-71unnamed protein product [Coffea canephora]
JMSF047A10Sequence676008521 (3)ref|XP_006354813.1|2e-38PREDICTED: mediator of RNA polymerase II transcription subunit 1-like [Solanum 760008521 (3)emb|CDP14924.1|2e-80unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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JMSF047A10-                   GGTGTTTCTTTAAGGAAGCAGAAAGCCATTTTCCGTTATCTGTTCTCTTTCA
                      ____________________________________________________________
consensus                     GGTGTTTCTTTAAGGAAGCAGAAAGCCATTTTCCGTTATCTGTTCTCTTTCA
 
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JMSF047A10-           TTCAACGCTCGTTTTCTCTTTCTATATCTATCCCTCTTTCTCTCTCTCTCTCTAAATTCC
                      ____________________________________________________________
consensus             TTCAACGCTCGTTTTCTCTTTCTATATCTATCCCTCTTTCTCTCTCTCTCTCTAAATTCC
 
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JMSF047A10-           TGTGACACTCTTCTCTCCTATCGAATTAGGGTTTTCCTCCTATTCTTCCGAGTCGACTCA
                      ____________________________________________________________
consensus             TGTGACACTCTTCTCTCCTATCGAATTAGGGTTTTCCTCCTATTCTTCCGAGTCGACTCA
 
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JMSF047A10-           GTTGCAGCAGCAGCACCAGCCATGATTTCCGATGGAATCTCCAACCCTGCGATCCCCATG
                      ____________________________________________________________
consensus             GTTGCAGCAGCAGCACCAGCCATGATTTCCGATGGAATCTCCAACCCTGCGATCCCCATG
 
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JMSF047A10-           GCGTCTTCCAACCCTAGGGATTTCGCCAAGAAAAAGAGAGCTAATCGTTCGGCCAAGTTG
                      ____________________________________________________________
consensus             GCGTCTTCCAACCCTAGGGATTTCGCCAAGAAAAAGAGAGCTAATCGTTCGGCCAAGTTG
 
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JMSF047A10-           AAGCAGTGCAAGCTTGATGCTCGTCGTGAGCAATGGCTTTCACAAGTTAAGAGTAAGGGT
                      ____________________________________________________________
consensus             AAGCAGTGCAAGCTTGATGCTCGTCGTGAGCAATGGCTTTCACAAGTTAAGAGTAAGGGT
 
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JMSF047A10-           GCCAAGGAGGAGTTGAATGGTGGAGGTGGGACTTGTGGTAGTGGGATGGATGCTGCCAAT
                      ____________________________________________________________
consensus             GCCAAGGAGGAGTTGAATGGTGGAGGTGGGACTTGTGGTAGTGGGATGGATGCTGCCAAT
 
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JMSF047A10-           GAGAAGGGCCAAGTGTTACAGAAATTAGAGATCAAGTCAGAAGGGGAAGAAGACAATGGT
                      ____________________________________________________________
consensus             GAGAAGGGCCAAGTGTTACAGAAATTAGAGATCAAGTCAGAAGGGGAAGAAGACAATGGT
 
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JMSF047A10-           GGACTCGTGCAAGATCACCACAACACTGACTTGCCTGTCTTGGAAGGGAGTGATTCCGGA
                      ____________________________________________________________
consensus             GGACTCGTGCAAGATCACCACAACACTGACTTGCCTGTCTTGGAAGGGAGTGATTCCGGA
 
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JMSF047A10-           ACAAACTTTACTGGGAGCAACGGTAGCACTAGCTGTAGCAGTGGTGGGTGTTGTTCAAGG
rJMSF047A10+             AACTTTACTGGGAGCAACGGTAGCACTAGCTGTAGCAGTGGTGGGTGTTGTTCAAGG
rJMSF022E07+                                                                   AGG
                      ____________________________________________________________
consensus             ACAAACTTTACTGGGAGCAACGGTAGCACTAGCTGTAGCAGTGGTGGGTGTTGTTCAAGG
 
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JMSF047A10-           AGCATGAGTGAAGAAGATGAGGAGCGGGATGATGTGTGCTTTGATGATTGGGAGGCTGTA
rJMSF047A10+          AGCATGAGTGAAGAAGATGAGGAGCGGGATGATGTGTGCTTTGATGATTGGGAGGCTGTA
rJMSF022E07+          AGCNTGAGTGAAGAAGATGAGGAGCGGGATGATGTGTGCNTTGATGATTGGGAGGCTGTA
                      ____________________________________________________________
consensus             AGCATGAGTGAAGAAGATGAGGAGCGGGATGATGTGTGCTTTGATGATTGGGAGGCTGTA
 
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JMSF047A10-           GCTGATGCTCTGGCTATCACAGAT                                    
rJMSF047A10+          GCTGATGCTCTGGCTATCACAGATAAGAAGCAGGAGCAGCCTACTAGGCCATGTTTGGAT
rJMSF022E07+          GCTGATGCTCTGGCTATCACAGATAAGAAGCAGGAGCAGCCTACTAGGCCATG-TTGGAT
                      ____________________________________________________________
consensus             GCTGATGCTCTGGCTATCACAGATAAGAAGCAGGAGCAGCCTACTAGGCCATGTTTGGAT
 
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rJMSF047A10+          GATAGAAACGACAATGTTGTGCATTTAAGTTCACAATCAGAGTTGTCTAGCTGCCAGGTT
rJMSF022E07+          GATAGAAACGACAATGTTGTGCATTTAAGTTCACAATCAGAGTTGTCTAGCTGCCAGGTT
                      ____________________________________________________________
consensus             GATAGAAACGACAATGTTGTGCATTTAAGTTCACAATCAGAGTTGTCTAGCTGCCAGGTT
 
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rJMSF047A10+          TCAGATGTCGATATATCAAAGTCAAAGCTAGAGAGTGGAGGTTTGGCACCTGGACTTCCT
rJMSF022E07+          TCAGATGTCGATATATCAAAGTCAAAGCTAGAGAGTGGAGGTTTGGCACCTGGACTTCCT
                      ____________________________________________________________
consensus             TCAGATGTCGATATATCAAAGTCAAAGCTAGAGAGTGGAGGTTTGGCACCTGGACTTCCT
 
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rJMSF047A10+          AAGATTTGCCAAGCATGGAGGCCTGATGATGCATTCCGTCCTCAGAGTCTTCCCAATTTG
rJMSF022E07+          AAGATTTGCCAAGCATGGAGGCCTGATGATGCATTCCGTCCTCAGAGTCTTCCCAATTTG
                      ____________________________________________________________
consensus             AAGATTTGCCAAGCATGGAGGCCTGATGATGCATTCCGTCCTCAGAGTCTTCCCAATTTG
 
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rJMSF047A10+          TCCAAGCAGTATAGTTTTCCTCTGAACTCAGGACGGCATTTCCGCGGAGGGTCTGTTTGG
rJMSF022E07+          TCCAAGCAGTATAGTTTTCCTCTGAACTCAGGACGGCATTTCCGCGGAGGGTCTGTTTGG
                      ____________________________________________________________
consensus             TCCAAGCAGTATAGTTTTCCTCTGAACTCAGGACGGCATTTCCGCGGAGGGTCTGTTTGG
 
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rJMSF047A10+          GGGCGTAAGAACTTGTCCGTACCCACATCATGCCCCATATGCTATGAAGATTTGGATCTC
rJMSF022E07+          GGGCGTAAGAACTTGTCCGTACCCACATCATGCCCCATATGCTATGAAGATTTGGATCTC
                      ____________________________________________________________
consensus             GGGCGTAAGAACTTGTCCGTACCCACATCATGCCCCATATGCTATGAAGATTTGGATCTC
 
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rJMSF047A10+          ACAGACACAAGTTTTCTACCTTGTTCATGCGGATTTAGGCTCTGCCTCTTCTGTCACAAG
rJMSF022E07+          ACAGACACAAGTTTTCTACCTTGTTCATGCGGATTTAGGCTCTGCCTCTTCTGTCACAAG
                      ____________________________________________________________
consensus             ACAGACACAAGTTTTCTACCTTGTTCATGCGGATTTAGGCTCTGCCTCTTCTGTCACAAG
 
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rJMSF047A10+          AGGATTCTTGAGGAGGATGGGCGCTGTCCTGGTTGCAGGAAGCAGTACAACCAAGATCCC
rJMSF022E07+          AGGATTCTTGAGGAGGATGGGCGCTGTCCTGGTTGCAGGAAGCAGTACAACCAAGATCCC
                      ____________________________________________________________
consensus             AGGATTCTTGAGGAGGATGGGCGCTGTCCTGGTTGCAGGAAGCAGTACAACCAAGATCCC
 
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rJMSF047A10+          GTTGATGGAGAGGCAACCATGGATGGTGGCTGCCTGGCAGTCCGATTGGCTCGTTCTTGC
rJMSF022E07+          GTTGATGGAGAGGCAACCATGGATGGTGGCTGCCTGGCAGTCCGATTGGCTCGTTCTTGC
                      ____________________________________________________________
consensus             GTTGATGGAGAGGCAACCATGGATGGTGGCTGCCTGGCAGTCCGATTGGCTCGTTCTTGC
 
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rJMSF047A10+          AGCATGATCTCAAGGTCCTAAAAGTACTATATTCCCCATAAACATATATGTCAGGTCCCT
rJMSF022E07+          AGCATGATCTCAAGGTCCTAAAAGTACTATATTCCCCATAAACATATATGTCAGGTCCCT
                      ____________________________________________________________
consensus             AGCATGATCTCAAGGTCCTAAAAGTACTATATTCCCCATAAACATATATGTCAGGTCCCT
 
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rJMSF047A10+          ATTTCTTTGTGGATTGAGTGTGTTCTTGTTATACTCAGATTTT                 
rJMSF022E07+          ATTTCTTTGTGGATTGAGTGTGTTCTTGTTATACTCAGATTTTTTGTAGTAGCATGATGT
                      ____________________________________________________________
consensus             ATTTCTTTGTGGATTGAGTGTGTTCTTGTTATACTCAGATTTTTTGTAGTAGCATGATGT
 
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rJMSF022E07+          TGATATAGAAACATCATTCTGAGCACATGAGGAAATATTCTAGTTCTCTTATGGTTCTAG
                      ____________________________________________________________
consensus             TGATATAGAAACATCATTCTGAGCACATGAGGAAATATTCTAGTTCTCTTATGGTTCTAG
 
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rJMSF022E07+          TGCATGATATATGGTGCATCTGTGCTATTGTAGAAGGATTGCTATGTGAATATATATGGT
                      ____________________________________________________________
consensus             TGCATGATATATGGTGCATCTGTGCTATTGTAGAAGGATTGCTATGTGAATATATATGGT