Contig 008521:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF022E07Sequence614015743ref|XP_009777127.1|4e-18PREDICTED: uncharacterized protein LOC104226766 isoform X1 [Nicotiana sylvestri842008521 (3)emb|CDP14924.1|6e-71unnamed protein product [Coffea canephora]
JMSF047A10Sequence676008521 (3)ref|XP_006354813.1|2e-38PREDICTED: mediator of RNA polymerase II transcription subunit 1-like [Solanum 760008521 (3)emb|CDP14924.1|2e-80unnamed protein product [Coffea canephora]

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF047A10- GGTGTTTCTTTAAGGAAGCAGAAAGCCATTTTCCGTTATCTGTTCTCTTTCA
                      ____________________________________________________________
consensus GGTGTTTCTTTAAGGAAGCAGAAAGCCATTTTCCGTTATCTGTTCTCTTTCA
 
. : . : . : . : . : . :
JMSF047A10- TTCAACGCTCGTTTTCTCTTTCTATATCTATCCCTCTTTCTCTCTCTCTCTCTAAATTCC
                      ____________________________________________________________
consensus TTCAACGCTCGTTTTCTCTTTCTATATCTATCCCTCTTTCTCTCTCTCTCTCTAAATTCC
 
. : . : . : . : . : . :
JMSF047A10- TGTGACACTCTTCTCTCCTATCGAATTAGGGTTTTCCTCCTATTCTTCCGAGTCGACTCA
                      ____________________________________________________________
consensus TGTGACACTCTTCTCTCCTATCGAATTAGGGTTTTCCTCCTATTCTTCCGAGTCGACTCA
 
. : . : . : . : . : . :
JMSF047A10- GTTGCAGCAGCAGCACCAGCCATGATTTCCGATGGAATCTCCAACCCTGCGATCCCCATG
                      ____________________________________________________________
consensus GTTGCAGCAGCAGCACCAGCCATGATTTCCGATGGAATCTCCAACCCTGCGATCCCCATG
 
. : . : . : . : . : . :
JMSF047A10- GCGTCTTCCAACCCTAGGGATTTCGCCAAGAAAAAGAGAGCTAATCGTTCGGCCAAGTTG
                      ____________________________________________________________
consensus GCGTCTTCCAACCCTAGGGATTTCGCCAAGAAAAAGAGAGCTAATCGTTCGGCCAAGTTG
 
. : . : . : . : . : . :
JMSF047A10- AAGCAGTGCAAGCTTGATGCTCGTCGTGAGCAATGGCTTTCACAAGTTAAGAGTAAGGGT
                      ____________________________________________________________
consensus AAGCAGTGCAAGCTTGATGCTCGTCGTGAGCAATGGCTTTCACAAGTTAAGAGTAAGGGT
 
. : . : . : . : . : . :
JMSF047A10- GCCAAGGAGGAGTTGAATGGTGGAGGTGGGACTTGTGGTAGTGGGATGGATGCTGCCAAT
                      ____________________________________________________________
consensus GCCAAGGAGGAGTTGAATGGTGGAGGTGGGACTTGTGGTAGTGGGATGGATGCTGCCAAT
 
. : . : . : . : . : . :
JMSF047A10- GAGAAGGGCCAAGTGTTACAGAAATTAGAGATCAAGTCAGAAGGGGAAGAAGACAATGGT
                      ____________________________________________________________
consensus GAGAAGGGCCAAGTGTTACAGAAATTAGAGATCAAGTCAGAAGGGGAAGAAGACAATGGT
 
. : . : . : . : . : . :
JMSF047A10- GGACTCGTGCAAGATCACCACAACACTGACTTGCCTGTCTTGGAAGGGAGTGATTCCGGA
                      ____________________________________________________________
consensus GGACTCGTGCAAGATCACCACAACACTGACTTGCCTGTCTTGGAAGGGAGTGATTCCGGA
 
. : . : . : . : . : . :
JMSF047A10- ACAAACTTTACTGGGAGCAACGGTAGCACTAGCTGTAGCAGTGGTGGGTGTTGTTCAAGG
rJMSF047A10+ AACTTTACTGGGAGCAACGGTAGCACTAGCTGTAGCAGTGGTGGGTGTTGTTCAAGG
rJMSF022E07+ AGG
                      ____________________________________________________________
consensus ACAAACTTTACTGGGAGCAACGGTAGCACTAGCTGTAGCAGTGGTGGGTGTTGTTCAAGG
 
. : . : . : . : . : . :
JMSF047A10- AGCATGAGTGAAGAAGATGAGGAGCGGGATGATGTGTGCTTTGATGATTGGGAGGCTGTA
rJMSF047A10+ AGCATGAGTGAAGAAGATGAGGAGCGGGATGATGTGTGCTTTGATGATTGGGAGGCTGTA
rJMSF022E07+ AGCNTGAGTGAAGAAGATGAGGAGCGGGATGATGTGTGCNTTGATGATTGGGAGGCTGTA
                      ____________________________________________________________
consensus AGCATGAGTGAAGAAGATGAGGAGCGGGATGATGTGTGCTTTGATGATTGGGAGGCTGTA
 
. : . : . : . : . : . :
JMSF047A10- GCTGATGCTCTGGCTATCACAGAT
rJMSF047A10+ GCTGATGCTCTGGCTATCACAGATAAGAAGCAGGAGCAGCCTACTAGGCCATGTTTGGAT
rJMSF022E07+ GCTGATGCTCTGGCTATCACAGATAAGAAGCAGGAGCAGCCTACTAGGCCATG-TTGGAT
                      ____________________________________________________________
consensus GCTGATGCTCTGGCTATCACAGATAAGAAGCAGGAGCAGCCTACTAGGCCATGTTTGGAT
 
. : . : . : . : . : . :
rJMSF047A10+ GATAGAAACGACAATGTTGTGCATTTAAGTTCACAATCAGAGTTGTCTAGCTGCCAGGTT
rJMSF022E07+ GATAGAAACGACAATGTTGTGCATTTAAGTTCACAATCAGAGTTGTCTAGCTGCCAGGTT
                      ____________________________________________________________
consensus GATAGAAACGACAATGTTGTGCATTTAAGTTCACAATCAGAGTTGTCTAGCTGCCAGGTT
 
. : . : . : . : . : . :
rJMSF047A10+ TCAGATGTCGATATATCAAAGTCAAAGCTAGAGAGTGGAGGTTTGGCACCTGGACTTCCT
rJMSF022E07+ TCAGATGTCGATATATCAAAGTCAAAGCTAGAGAGTGGAGGTTTGGCACCTGGACTTCCT
                      ____________________________________________________________
consensus TCAGATGTCGATATATCAAAGTCAAAGCTAGAGAGTGGAGGTTTGGCACCTGGACTTCCT
 
. : . : . : . : . : . :
rJMSF047A10+ AAGATTTGCCAAGCATGGAGGCCTGATGATGCATTCCGTCCTCAGAGTCTTCCCAATTTG
rJMSF022E07+ AAGATTTGCCAAGCATGGAGGCCTGATGATGCATTCCGTCCTCAGAGTCTTCCCAATTTG
                      ____________________________________________________________
consensus AAGATTTGCCAAGCATGGAGGCCTGATGATGCATTCCGTCCTCAGAGTCTTCCCAATTTG
 
. : . : . : . : . : . :
rJMSF047A10+ TCCAAGCAGTATAGTTTTCCTCTGAACTCAGGACGGCATTTCCGCGGAGGGTCTGTTTGG
rJMSF022E07+ TCCAAGCAGTATAGTTTTCCTCTGAACTCAGGACGGCATTTCCGCGGAGGGTCTGTTTGG
                      ____________________________________________________________
consensus TCCAAGCAGTATAGTTTTCCTCTGAACTCAGGACGGCATTTCCGCGGAGGGTCTGTTTGG
 
. : . : . : . : . : . :
rJMSF047A10+ GGGCGTAAGAACTTGTCCGTACCCACATCATGCCCCATATGCTATGAAGATTTGGATCTC
rJMSF022E07+ GGGCGTAAGAACTTGTCCGTACCCACATCATGCCCCATATGCTATGAAGATTTGGATCTC
                      ____________________________________________________________
consensus GGGCGTAAGAACTTGTCCGTACCCACATCATGCCCCATATGCTATGAAGATTTGGATCTC
 
. : . : . : . : . : . :
rJMSF047A10+ ACAGACACAAGTTTTCTACCTTGTTCATGCGGATTTAGGCTCTGCCTCTTCTGTCACAAG
rJMSF022E07+ ACAGACACAAGTTTTCTACCTTGTTCATGCGGATTTAGGCTCTGCCTCTTCTGTCACAAG
                      ____________________________________________________________
consensus ACAGACACAAGTTTTCTACCTTGTTCATGCGGATTTAGGCTCTGCCTCTTCTGTCACAAG
 
. : . : . : . : . : . :
rJMSF047A10+ AGGATTCTTGAGGAGGATGGGCGCTGTCCTGGTTGCAGGAAGCAGTACAACCAAGATCCC
rJMSF022E07+ AGGATTCTTGAGGAGGATGGGCGCTGTCCTGGTTGCAGGAAGCAGTACAACCAAGATCCC
                      ____________________________________________________________
consensus AGGATTCTTGAGGAGGATGGGCGCTGTCCTGGTTGCAGGAAGCAGTACAACCAAGATCCC
 
. : . : . : . : . : . :
rJMSF047A10+ GTTGATGGAGAGGCAACCATGGATGGTGGCTGCCTGGCAGTCCGATTGGCTCGTTCTTGC
rJMSF022E07+ GTTGATGGAGAGGCAACCATGGATGGTGGCTGCCTGGCAGTCCGATTGGCTCGTTCTTGC
                      ____________________________________________________________
consensus GTTGATGGAGAGGCAACCATGGATGGTGGCTGCCTGGCAGTCCGATTGGCTCGTTCTTGC
 
. : . : . : . : . : . :
rJMSF047A10+ AGCATGATCTCAAGGTCCTAAAAGTACTATATTCCCCATAAACATATATGTCAGGTCCCT
rJMSF022E07+ AGCATGATCTCAAGGTCCTAAAAGTACTATATTCCCCATAAACATATATGTCAGGTCCCT
                      ____________________________________________________________
consensus AGCATGATCTCAAGGTCCTAAAAGTACTATATTCCCCATAAACATATATGTCAGGTCCCT
 
. : . : . : . : . : . :
rJMSF047A10+ ATTTCTTTGTGGATTGAGTGTGTTCTTGTTATACTCAGATTTT
rJMSF022E07+ ATTTCTTTGTGGATTGAGTGTGTTCTTGTTATACTCAGATTTTTTGTAGTAGCATGATGT
                      ____________________________________________________________
consensus ATTTCTTTGTGGATTGAGTGTGTTCTTGTTATACTCAGATTTTTTGTAGTAGCATGATGT
 
. : . : . : . : . : . :
rJMSF022E07+ TGATATAGAAACATCATTCTGAGCACATGAGGAAATATTCTAGTTCTCTTATGGTTCTAG
                      ____________________________________________________________
consensus TGATATAGAAACATCATTCTGAGCACATGAGGAAATATTCTAGTTCTCTTATGGTTCTAG
 
. : . : . : . : . : . :
rJMSF022E07+ TGCATGATATATGGTGCATCTGTGCTATTGTAGAAGGATTGCTATGTGAATATATATGGT
                      ____________________________________________________________
consensus TGCATGATATATGGTGCATCTGTGCTATTGTAGAAGGATTGCTATGTGAATATATATGGT