Contig 008520:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMSF035I14-                              GATGATCTCAATCAACATATGCTTGAGCCACCCACAGGAAA
JMSF021P11-                              GATGATCTCAATCAACATATGCTTGAGCCACCCACAGGAAA
                      ____________________________________________________________
consensus                                GATGATCTCAATCAACATATGCTTGAGCCACCCACAGGAAA
 
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JMSF035I14-           ATACTAGTTAACTTCCCAGAAAATAGAAAATATGATATGAAGGTAGTAAAATATTAACAC
JMSF021P11-           ATACTAGTTAACTTCCCAGAAAATAGAAAATATGATATGAAGGTAGTAAAATATTAACAC
                      ____________________________________________________________
consensus             ATACTAGTTAACTTCCCAGAAAATAGAAAATATGATATGAAGGTAGTAAAATATTAACAC
 
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JMSF035I14-           CATAAATTTTTTGATCTTAATGAATACCTCAATTGATGCATTTATTTCGTTTCAACTAAA
JMSF021P11-           CATAAATTTTTTGATCTTAATGAATACCTCAATTGATGCATTTATTTCGTTTCAACTAAA
                      ____________________________________________________________
consensus             CATAAATTTTTTGATCTTAATGAATACCTCAATTGATGCATTTATTTCGTTTCAACTAAA
 
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JMSF035I14-           GGTTTAAGCTGAGGTGATCCCAAGTCCACAGGACCCTACCCCTAGAGCCACTACTGCTGA
JMSF021P11-           GGTTTAAGCTGAGGTGATCCCAAGTCCACAGGACCCTACCCCTAGAGCCACTACTGCTGA
                      ____________________________________________________________
consensus             GGTTTAAGCTGAGGTGATCCCAAGTCCACAGGACCCTACCCCTAGAGCCACTACTGCTGA
 
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JMSF035I14-           GGTAAATCGGGAGTCGCGCAATCAGCTCACCGGTCAAATTCTAATTTTCATGTGCACACA
JMSF021P11-           GGTAAATCGGGAGTCGCGCAATCAGCTCACCGGTCAAATTCTAATTTTCATGTGCACACA
                      ____________________________________________________________
consensus             GGTAAATCGGGAGTCGCGCAATCAGCTCACCGGTCAAATTCTAATTTTCATGTGCACACA
 
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JMSF035I14-           AGGTCTGCACTTCTAGACCTTTAAGTCAGACAATGAACCAAGTTTGGGATACTATTTATA
JMSF021P11-           AGGTCTGCACTTCTAGACCTTTAAGTCAGACAATGAACCAAGTTTGGGATACTATTTATA
                      ____________________________________________________________
consensus             AGGTCTGCACTTCTAGACCTTTAAGTCAGACAATGAACCAAGTTTGGGATACTATTTATA
 
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JMSF035I14-           ATTATATTTACATACTATATGCTCAACATGGGCAACAGTTGACTCATCTCTGCAATTTGA
JMSF021P11-           ATTATATTTACATACTATATGCTCAACATGGGCAACAGTTGACTCATCTCTGCAATTTGA
                      ____________________________________________________________
consensus             ATTATATTTACATACTATATGCTCAACATGGGCAACAGTTGACTCATCTCTGCAATTTGA
 
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JMSF035I14-           TTCAGCAGCTGCTTTATCCTGTGCACAACATCATTTCAGAAATTTAACCAAACTTTAATT
JMSF021P11-           TTCAGCAGCTGCTTTATCCTGTGCACAACATCATTTCAGAAATTTAACCAAACTTTAATT
                      ____________________________________________________________
consensus             TTCAGCAGCTGCTTTATCCTGTGCACAACATCATTTCAGAAATTTAACCAAACTTTAATT
 
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JMSF035I14-           TTCTTTTCATTGGCATTTTCACAAACACTTGAAAGTTGAAGAAAGCAACAAGAAATACTT
JMSF021P11-           TTCTTTTCATTGGCATTTTCACAAACACTTGAAAGTTGAAGAAAGCAACAAGAAATACTT
rJMSF021P11+                                       TGAAAGTTGAAGAAAGCACCAAGAAATACTT
                      ____________________________________________________________
consensus             TTCTTTTCATTGGCATTTTCACAAACACTTGAAAGTTGAAGAAAGCAACAAGAAATACTT
 
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JMSF035I14-           AAACTGAATACTCGAACATTCGAATCAGCTGTTCCCTGCCCTCTCCGCCGCAGATCAATC
JMSF021P11-           AAACTGAATACTCGAACATTCGAATCAGCTGTTCCCTGCCCTCTCCGCCGCAGATCAATC
rJMSF035I14+                                         TTCCCTGCCCTNTCCGCCGCAGATCAATC
rJMSF021P11+          AAACTGAATACTCGAACATTCGAATCAGCTGTTCCCTGCCCTCTCCGCCGCAGATCAATC
                      ____________________________________________________________
consensus             AAACTGAATACTCGAACATTCGAATCAGCTGTTCCCTGCCCTCTCCGCCGCAGATCAATC
 
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JMSF035I14-           TCCTCCGCCACCGAAAATACAAAAAACATCACTACAACTGCCGCCCTTGGCTGTGCCGAT
JMSF021P11-           TCCTCCGCCACCGAAAATACAAAAAACATCACTACAACTGCCGCCCTTGGCTGTGCCGAT
rJMSF035I14+          TCCTCCGCCACCGAAAATACAAAAAACATCACTACAACTGCCGCCCTTGGCTGTGCCGAT
rJMSF021P11+          TCCTCCGCCACCGAAAATACAAAAAACATCACTACAACTGCCGCCCTTGGCTGTGCCGAT
                      ____________________________________________________________
consensus             TCCTCCGCCACCGAAAATACAAAAAACATCACTACAACTGCCGCCCTTGGCTGTGCCGAT
 
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JMSF021P11-           TGAAGATATAAATGACACGATTGTCCCTGAC                             
rJMSF035I14+          TGAAGATATAAATGACACGATTGTCCCTGACACCGTAGAGATATATCGGAAAAGCTGCTC
rJMSF021P11+          TGAAGATATAAATGACACGATTGTCCCTGACACCGTAGAGATATATCGGAAAAGCTGCTC
                      ____________________________________________________________
consensus             TGAAGATATAAATGACACGATTGTCCCTGACACCGTAGAGATATATCGGAAAAGCTGCTC
 
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rJMSF035I14+          AATCCCGTTGGATTTGGAATGTAATACTTTTAGTAGGAATCGAAACTTTGCCGAGTCAAC
rJMSF021P11+          AATCCCGTTGGATTTGGAATGTAATACTTTTAGTAGGAATCGAAACTTTGCCGAGTCAAC
                      ____________________________________________________________
consensus             AATCCCGTTGGATTTGGAATGTAATACTTTTAGTAGGAATCGAAACTTTGCCGAGTCAAC
 
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rJMSF035I14+          AGTCGATTTCAATTCGCTAGCTGCCTAGGGCTCCGCCGGTTGAGCAAGCTGGGATTCTGA
rJMSF021P11+          AGTCGATTTCAATTCGCTAGCTGCCTAGGGCTCCGCCGGTTGAGCAAGCTGGGATTCTGA
                      ____________________________________________________________
consensus             AGTCGATTTCAATTCGCTAGCTGCCTAGGGCTCCGCCGGTTGAGCAAGCTGGGATTCTGA
 
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rJMSF035I14+          AGGTGGGAATGAAATACGACAAATCGTCGTTTTCGACACCGAATTGCGATCTAGACGACA
rJMSF021P11+          AGGTGGGAATGAAATACGACAAATCGTCGTTTTCGACACCGAATTGCGATCTAGACGACA
                      ____________________________________________________________
consensus             AGGTGGGAATGAAATACGACAAATCGTCGTTTTCGACACCGAATTGCGATCTAGACGACA
 
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rJMSF035I14+          ATGATGATGACGTGGAAGATTCCCAGGGCGACGGGGGGGTATGGATTTGGAGACGAAAAC
rJMSF021P11+          ATGATGATGACGTGGAAGATTCCCAGGGCGACGGGGGGGTATGGATTTGGAGACGAAAAC
                      ____________________________________________________________
consensus             ATGATGATGACGTGGAAGATTCCCAGGGCGACGGGGGGGTATGGATTTGGAGACGAAAAC
 
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rJMSF035I14+          GACTGTTTCATGTGATTTTGCGGGATGAAATGATGGATTAGACATGCGGAGGCATGCATG
rJMSF021P11+          GACTGTTTCATGTGATTTTGCGGGATGAAATGATGGATTAGACATGCGGAGGCATGCATG
                      ____________________________________________________________
consensus             GACTGTTTCATGTGATTTTGCGGGATGAAATGATGGATTAGACATGCGGAGGCATGCATG
 
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rJMSF035I14+          CAGCTTCTTGTGGTTAGAAATTTTTAGCAAAAAAATGATATTTTAAGTGATAATTTTGTG
rJMSF021P11+          CAGCTTCTTGTGGTTAGAAATTTTTAGCAAAAAAATGATATTTTAAGTGATAATTTTGTG
                      ____________________________________________________________
consensus             CAGCTTCTTGTGGTTAGAAATTTTTAGCAAAAAAATGATATTTTAAGTGATAATTTTGTG
 
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rJMSF035I14+          CGAATGATATTGTGGTCTAGTCACATGAATGAAGTGACTTTTTCAAATGAAAGATCATGA
rJMSF021P11+          CGAATGATATTGTGGTCTAGTCACATGAATGAAGTGACTTTTTCAAATGAAAGATCATGA
                      ____________________________________________________________
consensus             CGAATGATATTGTGGTCTAGTCACATGAATGAAGTGACTTTTTCAAATGAAAGATCATGA
 
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rJMSF035I14+          ATTTGAGCCTTAATGAGGTAGTATTGACTCTTTGTGCTTGAGAAAGTAGCTATGAACAGA
rJMSF021P11+          ATTTGAGCCTTAATGAGGTAGTATTGACTCTTTGTGCTTGAGAAAGTAGCTATGAACAGA
                      ____________________________________________________________
consensus             ATTTGAGCCTTAATGAGGTAGTATTGACTCTTTGTGCTTGAGAAAGTAGCTATGAACAGA
 
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rJMSF035I14+          TACTAAATTGTAANCAGGGTCAATAGTACTTGAAAAAAGTGTTGATTTT           
rJMSF021P11+          TACTAAATTGTAANCAGGGTCAATAGTACTTGAAAAAAGTGTTGATTTTGTGGTATAAAT
                      ____________________________________________________________
consensus             TACTAAATTGTAANCAGGGTCAATAGTACTTGAAAAAAGTGTTGATTTTGTGGTATAAAT