Contig 008518:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF016L15Sequence512013364 (3)ref|XP_009779634.1|2e-26PREDICTED: alkylated DNA repair protein alkB homolog 8-like [Nicotiana sylvestr787008518 (3)ref|XP_004237858.1|4e-73PREDICTED: alkylated DNA repair protein alkB homolog 8 [Solanum lycopersicum]
JMSF021N12Sequence652013364 (3)ref|XP_009779634.1|2e-59PREDICTED: alkylated DNA repair protein alkB homolog 8-like [Nicotiana sylvestr742008518 (3)ref|XP_004237858.1|7e-59PREDICTED: alkylated DNA repair protein alkB homolog 8 [Solanum lycopersicum]
JMSF023C07Sequence655013364 (3)ref|XP_009779634.1|3e-60PREDICTED: alkylated DNA repair protein alkB homolog 8-like [Nicotiana sylvestr810008518 (3)ref|XP_004237858.1|2e-78PREDICTED: alkylated DNA repair protein alkB homolog 8 [Solanum lycopersicum]

Alignment

This contig is upended


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rJMSF023C07+                  ACTTAAGTNCAGAAAATAGGAGGAGAAAAGCTGTAGAAGAACTAGTACGCAT
rJMSF016L15+                                             AAGCTGTAGAAGAACTAGTACGCAT
                      ____________________________________________________________
consensus                     ACTTAAGTNCAGAAAATAGGAGGAGAAAAGCTGTAGAAGAACTAGTACGCAT
 
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rJMSF023C07+          AGTTAAAAAGGGAGGCTTTGTATTGATTACAGTTTGGGCTAGGGAACAGGAAGATGGATC
rJMSF016L15+          AGTTAAAAAGGGAGGCTTTGTATTGATTACAGTTTGGGCTAGGGAACAGGAAGATGGATC
rJMSF021N12+                                                CTAGGGAACAGGAAGATGGATC
                      ____________________________________________________________
consensus             AGTTAAAAAGGGAGGCTTTGTATTGATTACAGTTTGGGCTAGGGAACAGGAAGATGGATC
 
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rJMSF023C07+          ATTGGTTAACAAATGGACACCACTTACAGAGAAGTATTTGGAGGAATGGGTAGCACCAAG
rJMSF016L15+          ATTGGTTAACAAATGGACACCACTTACAGAGAAGTATTTGGAGGAATGGGTAGCACCAAG
rJMSF021N12+          ATTGGTTAACAAATGGACACCACTTACAGAGAAGTATTTGGAGGAATGGGTAGCACCAAG
                      ____________________________________________________________
consensus             ATTGGTTAACAAATGGACACCACTTACAGAGAAGTATTTGGAGGAATGGGTAGCACCAAG
 
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rJMSF023C07+          CAGTCCTCGGATTCGCAATCCTTCCTCTCCTCGGACTCTAGCAAGCATCCCGGAGACTGA
rJMSF016L15+          CAGTCCTCGGATTCGCAATCCTTCCTCTCCTCGGACTCTAGCAAGCATCCCGGAGACTGA
rJMSF021N12+          CAGTCCTCGGATTCGCAATCCTTCCTCTCCTCGGACTCTAGCAAGCATCCCGGAGACTGA
                      ____________________________________________________________
consensus             CAGTCCTCGGATTCGCAATCCTTCCTCTCCTCGGACTCTAGCAAGCATCCCGGAGACTGA
 
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rJMSF023C07+          GGAAAATGGCTCGGGAGTGAATAAATCAGCTGAAATTTCACATTCAGCAGTTCATGATAG
rJMSF016L15+          GGAAAATGGCTCGGGAGTGAATAAATCAGCTGAAATTTCACATTCAGCAGTTCATGATAG
rJMSF021N12+          GGAAAATGGCTCGGGAGTGAATAAATCAGCTGAAATTTCACATTCAGCAGTTCATGATAG
                      ____________________________________________________________
consensus             GGAAAATGGCTCGGGAGTGAATAAATCAGCTGAAATTTCACATTCAGCAGTTCATGATAG
 
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rJMSF023C07+          AGGTCATTTGGATTCTGGAATTGAAAATGCTTCTATAGAGCAACAGGAATACTTTGTTCC
rJMSF016L15+          AGGTCATTTGGATTCTGGAATTGAAAATGCTTCTATAGAGCAACAGGAATACTTTGTTCC
rJMSF021N12+          AGGTCATTTGGATTCTGGAATTGAAAATGCTTCTATAGAGCAACAGGAATACTTTGTTCC
                      ____________________________________________________________
consensus             AGGTCATTTGGATTCTGGAATTGAAAATGCTTCTATAGAGCAACAGGAATACTTTGTTCC
 
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rJMSF023C07+          TTGGCATTTACCTTATCATAGAGCTGAAGTAAGCGGGGCTTCTGCTTGTGCCCTCGCAAG
rJMSF016L15+          TTGGCATTTACCTTATCATAGAGCTGAAGTAAGCGGGGCTTCTGCTTGTGCCCTCGCAAG
rJMSF021N12+          TTGGCATTTACCTTATCATAGAGCTGAAGTAAGCGGGGCTTCTGCTTGTGCCCTCGCAAG
                      ____________________________________________________________
consensus             TTGGCATTTACCTTATCATAGAGCTGAAGTAAGCGGGGCTTCTGCTTGTGCCCTCGCAAG
 
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rJMSF023C07+          TGGCCTGGCAAAGAAAGATGATAAAAAGGGTGCAGTTGTGTATAACAGATATTACCATGT
rJMSF016L15+          TGGCCTGGCAAAGAAAGATGATAAAAAGGGTGCAGTTGTGTATAACAGATATTACCATGT
rJMSF021N12+          TGGCCTGGCAAAGAAAGATGATAAAAAGGGTGCAGTTGTGTATAACAGATATTACCATGT
                      ____________________________________________________________
consensus             TGGCCTGGCAAAGAAAGATGATAAAAAGGGTGCAGTTGTGTATAACAGATATTACCATGT
 
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rJMSF023C07+          TTTTAGTGAAGGTGAACTAGAAAGGTTGGTGTCTGGTTTGGATAATGCAGTCATTGTTGA
rJMSF016L15+          TTTTAGTGAAGGTGAACTAGAAAGGTTGGTGTCTGGTTTGGATAATGCAGTCATTGTTGA
rJMSF021N12+          TTTTAGTGAAGGTGAACTAGAAAGGTTGGTGTCTGGTTTGGATAATGCAGTCATTGTTGA
                      ____________________________________________________________
consensus             TTTTAGTGAAGGTGAACTAGAAAGGTTGGTGTCTGGTTTGGATAATGCAGTCATTGTTGA
 
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rJMSF023C07+          TAGATTCTATGATAAATCAAATTGGTGCATCATACTCGAGAAGACATCCTGATAAAGTGA
rJMSF016L15+          TAGATTCTATGATAAATCAAATTGGTGCATCATACTCGAGAAGACATCCTGATAAAGTGA
rJMSF021N12+          TAGATTCTATGATAAATCAAATTGGTGCATCATACTCGAGAAGACATCCTGATAAAGTGA
                      ____________________________________________________________
consensus             TAGATTCTATGATAAATCAAATTGGTGCATCATACTCGAGAAGACATCCTGATAAAGTGA
 
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rJMSF023C07+          CACCATAAAATACGATGACAATAAGACTACATAGATGTGTTCCGAGATTAGGGTGATTGA
rJMSF016L15+          CACCATAAAATACGATGACAATAAGACTACATAGATGTGTTCCGAGATTAGGGTGATTGA
rJMSF021N12+          CACCATAAAATACGATGACAATAAGACTACATAGATGTGTTCCGAGATTAGGGTGATTGA
                      ____________________________________________________________
consensus             CACCATAAAATACGATGACAATAAGACTACATAGATGTGTTCCGAGATTAGGGTGATTGA
 
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rJMSF023C07+          ACATCGTGCTAATCTTTGCTGGGGTTGAGAAGTCATTGCAGGCTTTTCAACCAAGACCAG
rJMSF016L15+          ACATCGTGCTAATCTTTGCTGGGGTTGAGAAGTCATTGCAGGCTTTTCAACCAAGACCAG
rJMSF021N12+          ACATCGTGCTAATCTTTGCTGGGGTTGAGAAGTCATTGCAGGCTTTTCAACCAAGACCAG
                      ____________________________________________________________
consensus             ACATCGTGCTAATCTTTGCTGGGGTTGAGAAGTCATTGCAGGCTTTTCAACCAAGACCAG
 
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rJMSF023C07+          CACATCCATACATTAGTCAATAAAACTACTGAAGGGGAGCTCTTTTTCTTATGGGAGACT
rJMSF016L15+          CACATCCATACATTAGTCAATAAAACTACTGAAGGGGAGCTCTTTTTCTTATGGGAGACT
rJMSF021N12+          CACATCCATACATTAGTCAATAAAACTACTGAAGGGGAGCTCTTTTTCTTATGGGAGACT
                      ____________________________________________________________
consensus             CACATCCATACATTAGTCAATAAAACTACTGAAGGGGAGCTCTTTTTCTTATGGGAGACT
 
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rJMSF023C07+          TCTTTTATGCTTCTCTCCTTGCCTGTAATGTCTGAATG                      
rJMSF016L15+          TCTTTTATGCTTCTCTCCTTGCCTGTAATGTCTGAATG                      
rJMSF021N12+          TCTTTTATGCTTCTCTCCTTGCCTGTAATGTCTGAATGTACACTTCTCCCTCTTGTGATT
                      ____________________________________________________________
consensus             TCTTTTATGCTTCTCTCCTTGCCTGTAATGTCTGAATGTACACTTCTCCCTCTTGTGATT