| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF010A24 | Sequence | 567 | 008517 (12) | ref|XP_006384170.1| | 2e-58 | hypothetical protein POPTR_0004s09030g [Populus trichocarpa] ref|XP_011002796.1| | 612 | 008517 (12) | ref|XP_006384170.1| | 4e-58 | hypothetical protein POPTR_0004s09030g [Populus trichocarpa] ref|XP_011002796.1| |
| JMFN006A17 | Sequence | 599 | 008517 (12) | ref|XP_006384170.1| | 3e-58 | hypothetical protein POPTR_0004s09030g [Populus trichocarpa] ref|XP_011002796.1| | |||||
| JMFN008H17 | Sequence | 614 | 008517 (12) | ref|XP_006384170.1| | 4e-58 | hypothetical protein POPTR_0004s09030g [Populus trichocarpa] ref|XP_011002796.1| | |||||
| JMFN011J04 | Sequence | 531 | 008517 (12) | ref|XP_006384170.1| | 4e-57 | hypothetical protein POPTR_0004s09030g [Populus trichocarpa] ref|XP_011002796.1| | |||||
| JMFN031H02 | Sequence | 563 | 008517 (12) | gb|AGH68506.1| | 3e-63 | histone H2B.1, partial [Ipomoea batatas] | |||||
| JMFN034K19 | Sequence | 568 | 008517 (12) | ref|XP_006384170.1| | 2e-58 | hypothetical protein POPTR_0004s09030g [Populus trichocarpa] ref|XP_011002796.1| | |||||
| JMFN038I22 | Sequence | 625 | 008517 (12) | ref|XP_006384170.1| | 5e-58 | hypothetical protein POPTR_0004s09030g [Populus trichocarpa] ref|XP_011002796.1| | |||||
| JMSF021L08 | Sequence | 667 | 008517 (12) | ref|XP_006384170.1| | 7e-58 | hypothetical protein POPTR_0004s09030g [Populus trichocarpa] ref|XP_011002796.1| | 605 | 008517 (12) | ref|XP_006384170.1| | 3e-58 | hypothetical protein POPTR_0004s09030g [Populus trichocarpa] ref|XP_011002796.1| |
| JMSF047D11 | Sequence | 694 | 008517 (12) | ref|XP_006384170.1| | 1e-57 | hypothetical protein POPTR_0004s09030g [Populus trichocarpa] ref|XP_011002796.1| | 642 | 008517 (12) | ref|XP_006384170.1| | 5e-58 | hypothetical protein POPTR_0004s09030g [Populus trichocarpa] ref|XP_011002796.1| |
This contig is upended
. : . : . : . : . : . :
JMFN031H02+ AAGATAAGAAAAACAACTTTCATTGATTTAGAACAGACCAATTTAATTACACAAAA
JMFN006A17+ AAGATAAGAAAAACAACTTTCATTGATTTAGAACAGACCAATTTAATTACACAAAA
JMFN038I22+ TAAGAAAAACAACTTTCATTGA-TTAGAACAGACCAATNTAATTACACAAAA
JMFN008H17+ CAACTTTCATTGATTTAGAACAGACCAATTTAATTACACAAAA
JMFN034K19+ AAAA
rJMFF010A24- ATTTAATTACACAAAA
rJMSF047D11- ACTTTCATTGATTTAGAACAGACCAATTTAATTACACAAAA
rJMSF021L08- ACAAAA
____________________________________________________________
consensus AAGATAAGAAAAACAACTTTCATTGATTTAGAACAGACCAATTTAATTACACAAAA
. : . : . : . : . : . :
JMFN031H02+ TACCTATTCCGCAATTCCATTAATTTTCCCAAAACACAACATAACCTAGATTTGAAATTA
JMFN006A17+ TACCTATTCCGCAATTCCATTAATTTTCCCAAAACACAACATAACCTAGATTTGAAATTA
JMFN038I22+ TACCTATTCCGCAATTCCATTAATTTTCCCAAAACACAACATAACCTAGATTTGAAATTA
JMFN008H17+ TACCTATTCCGCAATTCCATTAATTTTCCCAAAACACAACATAACCTAGATTTGAAATTA
JMFN034K19+ TACCTATTCTGCAATTCCATTAATTTNCCCAAAACACAACATAACCTAGATTTGAAATTA
rJMFF010A24- TACCTATTCCGCAATTCCATTAATTTTCCCAAAACACAACATAACCTAGATTTGAAATTA
JMFN011J04+ AAATTA
JMFF010A24+ CAAAACACAACATAACCTAGATTTGAAATTA
rJMSF047D11- TACCTATTCCGCAATTCCATTAATTTTCCCAAAACACAACATAACCTAGATTTGAAATTA
rJMSF021L08- TACCTATTCCGCAATTCCATTAATTTTCCC-AAACACAACATAACCTAGATTTGAAATTA
____________________________________________________________
consensus TACCTATTCCGCAATTCCATTAATTTTCCCAAAACACAACATAACCTAGATTTGAAATTA
. : . : . : . : . : . :
JMFN031H02+ AGGATTAAATCAATTCAGGAGCTAGTAAACTTAGTCACGGCCTTTGTGCCTTCAGACACG
JMFN006A17+ AGGATTAAATCAATTCAGGAGCTAGTAAACTTAGTCACGGCCTTTGTGCCTTCAGACACG
JMFN038I22+ AGGATTAAATCAATTCAGGAGCTAGTAAACTTAGTCACGGCCTTTGTGCCTTCAGACACG
JMFN008H17+ AGGATTAAATCAATTCAGGAGCTAGTAAACTTAGTCACGGCCTTTGTGCCTTCAGACACG
JMFN034K19+ AGGATTAAATCAATTCAGGAGCTAGTAAACTTAGTCACGGCCTTTGTGCCTTCAGACACG
rJMFF010A24- AGGATTAAATCAATTCAGGAGCTAGTAAACTTAGTCACGGCCTTTGTGCCTTCAGACACG
JMFN011J04+ AGGATTAAATCAATTCAGGAGCTAGTAAACTTAGTCACGGCCTTTGTGCCTTCAGACACG
JMFF010A24+ AGGATTAAATCAATTCAGGAGCTAGTAAACTTAGTCACGGCCTTTGTGCCTTCAGACACG
rJMSF047D11- AGGATTAAATCAATTCAGGAGCTAGTAAACTTAGTCACGGCCTTTGTGCCTTCAGACACG
JMSF047D11+ TTCAGGAGCTAGTAAACTTAGTCACGGCCTTTGTGCCTTCAGACACG
JMSF021L08+ TTCAGGAGCTAGTAAACTTAGTCACGGCCTTTGTGCCTTCAGACACG
rJMSF021L08- AGGATTAAATCAATTCAGGAGCTAGTAAACTTAGTCACGGCCTTTGTGCCTTCAGACACG
____________________________________________________________
consensus AGGATTAAATCAATTCAGGAGCTAGTAAACTTAGTCACGGCCTTTGTGCCTTCAGACACG
. : . : . : . : . : . :
JMFN031H02+ GCATGTTTCGCTAATTCGCCGGGGAGGACAAGGCGGACGGCGGTCTGGATCTCGCGGGAG
JMFN006A17+ GCATGTTTCGCTAATTCGCCGGGGAGGACAAGGCGGACGGCGGTCTGGATCTCGCGGGAG
JMFN038I22+ GCATGTTTCGCTAATTCGCCGGGGAGGACAAGGCGGACGGCGGTCTGGATCTCGCGGGAG
JMFN008H17+ GCATGTTTCGCTAATTCGCCGGGGAGGACAAGGCGGACGGCGGTCTGGATCTCGCGGGAG
JMFN034K19+ GCATGTTTCGCTAATTCGCCGGGGAGGACAAGGCGGACGGCGGTCTGGATCTCGCGGGAG
rJMFF010A24- GCATGTTTCGCTAATTCGCCGGGGAGGACAAGGCGGACGGCGGTCTGGATCTCGCGGGAG
JMFN011J04+ GCATGTTTCGCTAATTCGCCGGGGAGGACAAGGCGGACGGCGGTCTGGATCTCGCGGGAG
JMFF010A24+ GCATGTTTCGCTAATTCGCCGGGGAGGACAAGGCGGACGGCGGTCTGGATCTCGCGGGAG
rJMSF047D11- GCATGTTTCGCTAATTCGCCGGGGAGGACAAGGCGGACGGCGGTCTGGATCTCGCGGGAG
JMSF047D11+ GCATGTTTCGCTAATTCGCCGGGGAGGACAAGGCGGACGGCGGTCTGGATCTCGCGGGAG
JMSF021L08+ GCATGTTTCGCTAATTCGCCGGGGAGGACAAGGCGGACGGCGGTCTGGATCTCGCGGGAG
rJMSF021L08- GCATGTTTCGCTAATTCGCCGGGGAGGACAAGGCGGACGGCGGTCTGGATCTCGCGGGAG
____________________________________________________________
consensus GCATGTTTCGCTAATTCGCCGGGGAGGACAAGGCGGACGGCGGTCTGGATCTCGCGGGAG
. : . : . : . : . : . :
JMFN031H02+ GTGATTGTGGGCTTCTTGTTGTAACGGGCGAGCCTGGAGGACTCTTGCGCCAGTTTCTCA
JMFN006A17+ GTGATTGTGGGCTTCTTGTTGTAACGGGCGAGCCTGGAGGACTCTTGCGCCAGTTTCTCA
JMFN038I22+ GTGATTGTGGGCTTCTTGTTGTAACGGGCGAGCCTGGAGGACTCTTGCGCCAGTTTCTCA
JMFN008H17+ GTGATTGTGGGCTTCTTGTTGTAACGGGCGAGCCTGGAGGACTCTTGCGCCAGTTTCTCA
JMFN034K19+ GTGATTGTGGGCTTCTTGTTGTAACGGGCGAGCCTGGAGGACTCTTGCGCCAGTTTCTCA
rJMFF010A24- GTGATTGTGGGCTTCTTGTTGTAACGGGCGAGCCTGGAGGACTCTTGCGCCAGTTTCTCA
JMFN011J04+ GTGATTGTGGGCTTCTTGTTGTAACGGGCGAGCCTGGAGGACTCTTGCGCCAGTTTCTCA
JMFF010A24+ GTGATTGTGGGCTTCTTGTTGTAACGGGCGAGCCTGGAGGACTCTTGCGCCAGTTTCTCA
rJMSF047D11- GTGATTGTGGGCTTCTTGTTGTAACGGGCGAGCCTGGAGGACTCTTGCGCCAGTTTCTCA
JMSF047D11+ GTGATTGTGGGCTTCTTGTTGTAACGGGCGAGCCTGGAGGACTCTTGCGCCAGTTTCTCA
JMSF021L08+ GTGATTGTGGGCTTCTTGTTGTAACGGGCGAGCCTGGAGGACTCTTGCGCCAGTTTCTCA
rJMSF021L08- GTGATTGTGGGCTTCTTGTTGTAACGGGCGAGCCTGGAGGACTCTTGCGCCAGTTTCTCA
____________________________________________________________
consensus GTGATTGTGGGCTTCTTGTTGTAACGGGCGAGCCTGGAGGACTCTTGCGCCAGTTTCTCA
. : . : . : . : . : . :
JMFN031H02+ AAGATGTCGTTGATGAAGCTGTTCATAATCCCCATCGCCTTGCTGGAGATTCCGATGTCG
JMFN006A17+ AAGATGTCGTTGATGAAGCTGTTCATAATCCCCATCGCCTTGCTGGAGATTCCGATGTCG
JMFN038I22+ AAGATGTCGTTGATGAAGCTGTTCATAATCCCCATCGCCTTGCTGGAGATTCCGATGTCG
JMFN008H17+ AAGATGTCGTTGATGAAGCTGTTCATAATCCCCATCGCCTTGCTGGAGATTCCGATGTCG
JMFN034K19+ AAGATGTCGTTGATGAAGCTGTTCATAATCCCCATCGCCTTGCTGGAGATTCCGATGTCG
rJMFF010A24- AAGATGTCGTTGATGAAGCTGTTCATAATCCCCATCGCCTTGCTGGAGATTCCGATGTCG
JMFN011J04+ AAGATGTCGTTGATGAAGCTGTTCATAATCCCCATCGCCTTGCTGGAGATTCCGATGTCG
JMFF010A24+ AAGATGTCGTTGATGAAGCTGTTCATAATCCCCATCGCCTTGCTGGAGATTCCGATGTCG
rJMSF047D11- AAGATGTCGTTGATGAAGCTGTTCATAATCCCCATCGCCTTGCTGGAGATTCCGATGTCG
JMSF047D11+ AAGATGTCGTTGATGAAGCTGTTCATAATCCCCATCGCCTTGCTGGAGATTCCGATGTCG
JMSF021L08+ AAGATGTCGTTGATGAAGCTGTTCATAATCCCCATCGCCTTGCTGGAGATTCCGATGTCG
rJMSF021L08- AAGATGTCGTTGATGAAGCTGTTCATAATCCCCATCGCCTTGCTGGAGATTCCGATGTCG
____________________________________________________________
consensus AAGATGTCGTTGATGAAGCTGTTCATAATCCCCATCGCCTTGCTGGAGATTCCGATGTCG
. : . : . : . : . : . :
JMFN031H02+ GGGTGGACCTGCTTGAGGACCTTGAAGATGTAGATCTTGTAGGTCTCGGTGCTCTTCTTC
JMFN006A17+ GGGTGGACCTGCTTGAGGACCTTGAAGATGTAGATCTTGTAGGTCTCGGTGCTCTTCTTC
JMFN038I22+ GGGTGGACCTGCTTGAGGACCTTGAAGATGTAGATCTTGTAGGTCTCGGTGCTCTTCTTC
JMFN008H17+ GGGTGGACCTGCTTGAGGACCTTGAAGATGTAGATCTTGTAGGTCTCGGTGCTCTTCTTC
JMFN034K19+ GGGTGGACCTGCTTGAGGACCTTGAAGATGTAGATCTTGTAGGTCTCGGTGCTCTTCTTC
rJMFF010A24- GGGTGGACCTGCTTGAGGACCTTGAAGATGTAGATCTTGTAGGTCTCGGTGCTCTTCTTC
JMFN011J04+ GGGTGGACCTGCTTGAGGACCTTGAAGATGTAGATCTTGTAGGTCTCGGTGCTCTTCTTC
JMFF010A24+ GGGTGGACCTGCTTGAGGACCTTGAAGATGTAGATCTTGTAGGTCTCGGTGCTCTTCTTC
rJMSF047D11- GGGTGGACCTGCTTGAGGACCTTGAAGATGTAGATCTTGTAGGTCTCGGTGCTCTTCTTC
JMSF047D11+ GGGTGGACCTGCTTGAGGACCTTGAAGATGTAGATCTTGTAGGTCTCGGTGCTCTTCTTC
JMSF021L08+ GGGTGGACCTGCTTGAGGACCTTGAAGATGTAGATCTTGTAGGTCTCGGTGCTCTTCTTC
rJMSF021L08- GGGTGGACCTGCTTGAGGACCTTGAAGATGTAGATCTTGTAGGTCTCGGTGCTCTTCTTC
____________________________________________________________
consensus GGGTGGACCTGCTTGAGGACCTTGAAGATGTAGATCTTGTAGGTCTCGGTGCTCTTCTTC
. : . : . : . : . : . :
JMFN031H02+ ACCCGCTTCTTCTTCTTGTCGCCGGCAGCGGCGCCTCCTTCCTTGGGGAGCTTCTTCCCG
JMFN006A17+ ACCCGCTTCTTCTTCTTGTCGCCGGCAGCGGCGCCTCCTTCCTTGGGGAGCTTCTTCCCG
JMFN038I22+ ACCCGCTTCTTCTTCTTGTCGCCGGCAGCGGCGCCTCCTTCCTTGGGGAGCTTCTTCCCG
JMFN008H17+ ACCCGCTTCTTCTTCTTGTCGCCGGCAGCGGCGCCTCCTTCCTTGGGGAGCTTCTTCCCG
JMFN034K19+ ACCCGCTTCTTCTTCTTGTCGCCGGCAGCGGCGCCTCCTTCCTTGGGGAGCTTCTTCCCG
rJMFF010A24- ACCCGCTTCTTCTTCTTGTCGCCGGCAGCGGCGCCTCCTTCCTTGGGGAGCTTCTTCCCG
JMFN011J04+ ACCCGCTTCTTCTTCTTGTCGCCGGCAGCGGCGCCTCCTTCCTTGGGGAGCTTCTTCCCG
JMFF010A24+ ACCCGCTTCTTCTTCTTGTCGCCGGCAGCGGCGCCTCCTTCCTTGGGGAGCTTCTTCCCG
rJMSF047D11- ACCCGCTTCTTCTTCTTGTCGCCGGCAGCGGCGCCTCCTTCCTTGGGGAGCTTCTTCCCG
JMSF047D11+ ACCCGCTTCTTCTTCTTGTCGCCGGCAGCGGCGCCTCCTTCCTTGGGGAGCTTCTTCCCG
JMSF021L08+ ACCCGCTTCTTCTTCTTGTCGCCGGCAGCGGCGCCTCCTTCCTTGGGGAGCTTCTTCCCG
rJMSF021L08- ACCCGCTTCTTCTTCTTGTCGCCGGCAGCGGCGCCTCCTTCCTTGGGGAGCTTCTTCCCG
____________________________________________________________
consensus ACCCGCTTCTTCTTCTTGTCGCCGGCAGCGGCGCCTCCTTCCTTGGGGAGCTTCTTCCCG
. : . : . : . : . : . :
JMFN031H02+ GCCTTTGGCTTCTTCTCCGCCGGAGCTTTCTCGGCGACGCTGGTCTTCTTCTCCTCCGTC
JMFN006A17+ GCCTTTGGCTTCTTCTCCGCCGGAGCTTTCTCGGCGACGCTGGTCTTCTTCTCCTCCGTC
JMFN038I22+ GCCTTTGGCTTCTTCTCCGCCGGAGCTTTCTCGGCGACGCTGGTCTTCTTCTCCTCCGTC
JMFN008H17+ GCCTTTGGCTTCTTCTCCGCCGGAGCTTTCTCGGCGACGCTGGTCTTCTTCTCCTCCGTC
JMFN034K19+ GCCTTTGGCTTCTTCTCCGCCGGAGCTTTCTCGGCGACGCTGGTCTTCTTCTCCTCCGTC
rJMFF010A24- GCCTTTGGCTTCTTCTCCGCCGGAGCTTTCTCGGCGACGCTGGTCTTCTTCTCCTCCGTC
JMFN011J04+ GCCTTTGGCTTCTTCTCCGCCGGAGCTTTCTCGGCGACGCTGGTCTTCTTCTCCTCCGTC
JMFF010A24+ GCCTTTGGCTTCTTCTCCGCCGGAGCTTTCTCGGCGACGCTGGTCTTCTTCTCCTCCGTC
rJMSF047D11- GCCTTTGGCTTCTTCTCCGCCGGAGCTTTCTCGGCGACGCTGGTCTTCTTCTCCTCCGTC
JMSF047D11+ GCCTTTGGCTTCTTCTCCGCCGGAGCTTTCTCGGCGACGCTGGTCTTCTTCTCCTCCGTC
JMSF021L08+ GCCTTTGGCTTCTTCTCCGCCGGAGCTTTCTCGGCGACGCTGGTCTTCTTCTCCTCCGTC
rJMSF021L08- GCCTTTGGCTTCTTCTCCGCCGGAGCTTTCTCGGCGACGCTGGTCTTCTTCTCCTCCGTC
____________________________________________________________
consensus GCCTTTGGCTTCTTCTCCGCCGGAGCTTTCTCGGCGACGCTGGTCTTCTTCTCCTCCGTC
. : . : . : . : . : . :
JMFN031H02+ GGCTTCTCGGAGGCGGGCTTCTTCTCG
JMFN006A17+ GGCTTCTCGGAGGCGGGCTTCTTCTCGGCGGGCCTTTTCTCTGCCTTGGGAGCCATGGAA
JMFN038I22+ GGCTTCTCGGAGGCGGGCTTCTTCTCGGCGGGCCTTTTCTCTGCCTTGGGAGCCATGGAA
JMFN008H17+ GGCTTCTCGGAGGCGGGCTTCTTCTCGGCGGGCCTTTTCTCTGCCTTGGGAGCCATGGAA
JMFN034K19+ GGCTTCTCGGAGGCGGGCTTCTTCTCGGCGGGCCTTTTCTCTGCCTTGGGAGCCATGGAA
rJMFF010A24- GGCTTCTCGGAGGCGGGCTTCTTCTCGGCGGGCCTTTTCTCTGCCTTGGGAGCCATGGAA
JMFN011J04+ GGCTTCTCGGAGGCGGGCTTCTTCTCGGCGGGCCTTTTCTCTGCCTTGGGAGCCATGGAA
JMFF010A24+ GGCTTCTCGGAGGCGGGCTTCTTCTCGGCGGGCCTTTTCTCTGCCTTGGGAGCCATGGAA
rJMSF047D11- GGCTTCTCGGAGGCGGGCTTCTTCTCGGCGGGCCTTTTCTCTGCCTTGGGAGCCATGGAA
JMSF047D11+ GGCTTCTCGGAGGCGGGCTTCTTCTCGGCGGGCCTTTTCTCTGCCTTGGGAGCCATGGAA
JMSF021L08+ GGCTTCTCGGAGGCGGGCTTCTTCTCGGCGGGCCTTTTCTCTGCCTTGGGAGCCATGGAA
rJMSF021L08- GGCTTCTCGGAGGCGGGCTTCTTCTCGGCGGGCCTTTTCTCTGCCTTGGGAGCCATGGAA
____________________________________________________________
consensus GGCTTCTCGGAGGCGGGCTTCTTCTCGGCGGGCCTTTTCTCTGCCTTGGGAGCCATGGAA
. : . : . : . : . : . :
JMFN006A17+ A
JMFN038I22+ ATTCTTCGAAAGGATTTGAGTGTTT
JMFN008H17+ ATTCTTCGAAAGGATTTGAGTGTTTTGAAGA
JMFN034K19+ ATTCTTCGAAAGGATTTGAGTGTT
rJMFF010A24- ATTCTTCGAAAGGATTTGAGTGTTTTGAAGAGAGAATAAGAAAAGTGATTGTTTGC
JMFN011J04+ ATTCTTCGAAAGGATTTGAGTGTTTTGAAGA
JMFF010A24+ ATTCTTCGAAAGGATTTGAGTGTTTTGAAGAGAGAATAAGAAAAGTGATTGTTTGC
rJMSF047D11- ATTCTTCGAAAGGATTTGAGTGTTTTGAAGAGAGAATAAGAAAAGTGATTGTTTGCGATC
JMSF047D11+ ATTCTTCGAAAGGATTTGAGTGTTTTGAAGAGAGAATAAGAAAAGTGATTGTTTGCGATC
JMSF021L08+ ATTCTTCGAAAGGATTTGAGTGTTTTGAAGAGAGAATAAGAAAAGTGATTGTTTGCGATC
rJMSF021L08- ATTCTTCGAAAGGATTTGAGTGTTTTGAAGAGAGAATAAGAAAAGTGATTGTTTGCGATC
____________________________________________________________
consensus ATTCTTCGAAAGGATTTGAGTGTTTTGAAGAGAGAATAAGAAAAGTGATTGTTTGCGATC