Contig 008509:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF020N16Sequence635008509 (2)ref|XP_009610469.1|2e-57PREDICTED: nuclear envelope morphology protein 1-like isoform X2 [Nicotiana tom753008509 (2)ref|XP_009610468.1|3e-107PREDICTED: CTD nuclear envelope phosphatase 1 homolog isoform X1 [Nicotiana tom

Alignment

This contig is upended


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JMSF020N16-                                                     GATTCATTTCTCTCACGC
                      ____________________________________________________________
consensus                                                       GATTCATTTCTCTCACGC
 
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JMSF020N16-           CGGTGTACACGTCCACGGCGAAGCCCGAAGCCACTCCACGCTCACTCACTTCTTAGTTCT
                      ____________________________________________________________
consensus             CGGTGTACACGTCCACGGCGAAGCCCGAAGCCACTCCACGCTCACTCACTTCTTAGTTCT
 
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JMSF020N16-           AAGCCAGATTCCGGCGACTCATGGCGGACATGGCTCAGGCTGCCGACGTTTACGCGCCGA
                      ____________________________________________________________
consensus             AAGCCAGATTCCGGCGACTCATGGCGGACATGGCTCAGGCTGCCGACGTTTACGCGCCGA
 
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JMSF020N16-           GGAGTCCACACCTGTGGGGTGCGCTGTTGAACTGGCTGTGTTTCTTCTTCCAGATCCTCG
                      ____________________________________________________________
consensus             GGAGTCCACACCTGTGGGGTGCGCTGTTGAACTGGCTGTGTTTCTTCTTCCAGATCCTCG
 
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JMSF020N16-           TTCAGATCGTCAGAGGCACGCCGTCGCTCACTCAGGTCCTCTCCTACCTCGGCTTCCGCA
                      ____________________________________________________________
consensus             TTCAGATCGTCAGAGGCACGCCGTCGCTCACTCAGGTCCTCTCCTACCTCGGCTTCCGCA
 
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JMSF020N16-           ACAGCTCCTTTCTCTCCTCTCCGCCTCCGGAGTTCAAGCCGCTGCGGACGGTTGAGCTCT
                      ____________________________________________________________
consensus             ACAGCTCCTTTCTCTCCTCTCCGCCTCCGGAGTTCAAGCCGCTGCGGACGGTTGAGCTCT
 
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JMSF020N16-           CCGAGTTCCCGGAGCCTGAGGAGGCGCCGCCTCTGCCTCCGCCGCCCTCCGTGGCCGTTC
                      ____________________________________________________________
consensus             CCGAGTTCCCGGAGCCTGAGGAGGCGCCGCCTCTGCCTCCGCCGCCCTCCGTGGCCGTTC
 
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JMSF020N16-           AGCCTCTGCCAATCGCCAAGGGAAGAGTCGCCGGTTGCGACGGCGAGCATCCTCTGCCGA
                      ____________________________________________________________
consensus             AGCCTCTGCCAATCGCCAAGGGAAGAGTCGCCGGTTGCGACGGCGAGCATCCTCTGCCGA
 
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JMSF020N16-           GGCTCACGGTGGTCCTTGACTTGGATGAAACTTTGGTTTGTGCATATGAGACATCAACTT
                      ____________________________________________________________
consensus             GGCTCACGGTGGTCCTTGACTTGGATGAAACTTTGGTTTGTGCATATGAGACATCAACTT
 
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JMSF020N16-           TGCCTTCTATAATAACTACTGAGGCTACTGAGGCCGGGTTGAACTGGTTTGAACTCGAGT
rJMSF020N16+                                     CTGAGGCCGGGTTGAACTGGTTTGAACTCGAGT
                      ____________________________________________________________
consensus             TGCCTTCTATAATAACTACTGAGGCTACTGAGGCCGGGTTGAACTGGTTTGAACTCGAGT
 
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JMSF020N16-           GTGTATCTTCGGACAAGGAATGCGATGGCAAACCTAAGATCAACTACGTCACGGTGTTTG
rJMSF020N16+          GTGTATCTTCGGACAAGGAATGCGATGGCAAACCTAAGATCAANTACGTCACGGTGTTTG
                      ____________________________________________________________
consensus             GTGTATCTTCGGACAAGGAATGCGATGGCAAACCTAAGATCAACTACGTCACGGTGTTTG
 
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JMSF020N16-           AACGTCCTGGA                                                 
rJMSF020N16+          AACGTCCTGGACTCCATGAATTTCTGAAACAACTTGGCACATTTGCTGACCTTGTGTTAT
                      ____________________________________________________________
consensus             AACGTCCTGGACTCCATGAATTTCTGAAACAACTTGGCACATTTGCTGACCTTGTGTTAT
 
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rJMSF020N16+          TTACTGCTGGACTCGAAGGCTATGCGAGGCCCCTNGTCGACAAGATAGATGTTGAAAATC
                      ____________________________________________________________
consensus             TTACTGCTGGACTCGAAGGCTATGCGAGGCCCCTNGTCGACAAGATAGATGTTGAAAATC
 
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rJMSF020N16+          GGTTTATTCGCAGACTTTACAGGCCTTCAACCACTAGCACGGAATATCGAGAACACGTGA
                      ____________________________________________________________
consensus             GGTTTATTCGCAGACTTTACAGGCCTTCAACCACTAGCACGGAATATCGAGAACACGTGA
 
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rJMSF020N16+          AGGATTTGTCTGGAATATCAAATGATTTATCCCGAATTGTTATTGTTGACAACAATCCCT
                      ____________________________________________________________
consensus             AGGATTTGTCTGGAATATCAAATGATTTATCCCGAATTGTTATTGTTGACAACAATCCCT
 
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rJMSF020N16+          TCAGTTTCTTATTGCAACCATTAAACGGGATTCCCTGCATTCCATTCTCTGCTGGACAGC
                      ____________________________________________________________
consensus             TCAGTTTCTTATTGCAACCATTAAACGGGATTCCCTGCATTCCATTCTCTGCTGGACAGC
 
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rJMSF020N16+          CACACGATGAGCAGCTAATGGACGTGATACTCCCGCTCCTCAAGCATCTCTCTCAGCAGG
                      ____________________________________________________________
consensus             CACACGATGAGCAGCTAATGGACGTGATACTCCCGCTCCTCAAGCATCTCTCTCAGCAGG
 
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rJMSF020N16+          AGGACGTCCGGCCAGCGCTCAACCAAAGGTTCCATATGCCGGAATGGTNTGAAAAGCATG
                      ____________________________________________________________
consensus             AGGACGTCCGGCCAGCGCTCAACCAAAGGTTCCATATGCCGGAATGGTNTGAAAAGCATG
 
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rJMSF020N16+          GAATCCCAAGTTCTGGATTGACAACGTAGGATGAAGAAGAAGATGTTATTGTTGTGGTAA
                      ____________________________________________________________
consensus             GAATCCCAAGTTCTGGATTGACAACGTAGGATGAAGAAGAAGATGTTATTGTTGTGGTAA
 
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rJMSF020N16+          TAAGTTACTTCTGAGAAAGAATTTTTGTATAGCATGATTTTGTCTGAATGAGTATGGCAT
                      ____________________________________________________________
consensus             TAAGTTACTTCTGAGAAAGAATTTTTGTATAGCATGATTTTGTCTGAATGAGTATGGCAT
 
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rJMSF020N16+          TGACAAAAGAGGTTCTGTAGTCTCTCCCATTCAGATCATGTGCATCAGNGCATGTATAAT
                      ____________________________________________________________
consensus             TGACAAAAGAGGTTCTGTAGTCTCTCCCATTCAGATCATGTGCATCAGNGCATGTATAAT
 
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rJMSF020N16+          TGGNGGATTCGGAGATTCTTGTATAAGCTCTGTTTATAGCTATNCTTGTATTATTGGTGT
                      ____________________________________________________________
consensus             TGGNGGATTCGGAGATTCTTGTATAAGCTCTGTTTATAGCTATNCTTGTATTATTGGTGT