Contig 008507:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF009G24Sequence248006053 (4)751008507 (2)ref|XP_004242585.1|8e-135PREDICTED: omega-6 fatty acid desaturase, chloroplastic [Solanum lycopersicum]
JMSF019P07Sequence490006053 (4)ref|XP_009801093.1|5e-30PREDICTED: omega-6 fatty acid desaturase, chloroplastic isoform X2 [Nicotiana s738008507 (2)ref|XP_004242585.1|2e-131PREDICTED: omega-6 fatty acid desaturase, chloroplastic [Solanum lycopersicum]

Alignment

This contig is upended


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rJMSF009G24+                                       TTGCGTAAGGCATTGATAATTGCTATGGGAC
rJMSF019P07+                                                    TGATAATTGCTATGGGAC
                      ____________________________________________________________
consensus                                          TTGCGTAAGGCATTGATAATTGCTATGGGAC
 
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rJMSF009G24+          CCATTCGACCTTGGATGTCTATAGCTCACTGGTTGGTCTGCCATTTTAATTTGAACAAGT
rJMSF019P07+          CCATTCGACCTTGGATGTCTATAGCTCACTGGTTGGTCTGCCATTTTAATTTGAACAAGT
                      ____________________________________________________________
consensus             CCATTCGACCTTGGATGTCTATAGCTCACTGGTTGGTCTGCCATTTTAATTTGAACAAGT
 
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rJMSF009G24+          TCAGACCTAGCGAAGTCAATAGAGTAAAAATAAGCTTAGCCTGCGTCTTTGCTTTCATGG
rJMSF019P07+          TCAGACCTAGCGAAGTCAATAGAGTAAAAATAAGCTTAGCCTGCGTCTTTGCTTTCATGG
                      ____________________________________________________________
consensus             TCAGACCTAGCGAAGTCAATAGAGTAAAAATAAGCTTAGCCTGCGTCTTTGCTTTCATGG
 
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rJMSF009G24+          CTATTGGATGGCCGTTGATCATCTACAAAGCGGGAATAATTGGATGGGTCAAGTTTTGGC
rJMSF019P07+          CTATTGGATGGCCGTTGATCATCTACAAAGCGGGAATAATTGGATGGGTCAAGTTTTGGC
                      ____________________________________________________________
consensus             CTATTGGATGGCCGTTGATCATCTACAAAGCGGGAATAATTGGATGGGTCAAGTTTTGGC
 
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rJMSF009G24+          TCATGCCATGGCTGGGTTATCACTTTTGGATGAGTACCTTTACAATGGTCCATCATACCG
rJMSF019P07+          TCATGCCATGGCTGGGTTATCACTTTTGGATGAGTACCTTTACAATGGTCCATCATACCG
                      ____________________________________________________________
consensus             TCATGCCATGGCTGGGTTATCACTTTTGGATGAGTACCTTTACAATGGTCCATCATACCG
 
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rJMSF009G24+          CTCCTCACATTCCCTTCAAATATTCAAACGAGTGGAATGCAGCTCAAGCCCAGCTTAATG
rJMSF019P07+          CTCCTCACATTCCCTTCAAATATTCAAACGAGTGGAATGCAGCTCAAGCCCAGCTTAATG
                      ____________________________________________________________
consensus             CTCCTCACATTCCCTTCAAATATTCAAACGAGTGGAATGCAGCTCAAGCCCAGCTTAATG
 
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rJMSF009G24+          GCACAGTTCATTGCGACTATCCTCGTTGGATTGAGATCCTTTGCCACGATATTAATGTTC
rJMSF019P07+          GCACAGTTCATTGCGACTATCCTCGTTGGATTGAGATCCTTTGCCACGATATTAATGTTC
                      ____________________________________________________________
consensus             GCACAGTTCATTGCGACTATCCTCGTTGGATTGAGATCCTTTGCCACGATATTAATGTTC
 
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rJMSF009G24+          ACATACCCCACCATGTCTCCCCGAGAATACCAAGCTATAATCTGCGGGATGCTCATAAAT
rJMSF019P07+          ACATACCCCACCATGTCTCCCCGAGAATACCAAGCTATAATCTGCGGGATGCTCATAAAT
                      ____________________________________________________________
consensus             ACATACCCCACCATGTCTCCCCGAGAATACCAAGCTATAATCTGCGGGATGCTCATAAAT
 
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rJMSF009G24+          CCATCCAAGAGAATTGGGGAAGGTACTTGAATGAGGCCACATGGAATTGGCGTCTAATGA
rJMSF019P07+          CCATCCAAGAGAATTGGGGAAGGTACTTGAATGAGGCCACATGGAATTGGCGTCTAATGA
                      ____________________________________________________________
consensus             CCATCCAAGAGAATTGGGGAAGGTACTTGAATGAGGCCACATGGAATTGGCGTCTAATGA
 
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rJMSF009G24+          AGACGATAATGACAATGTGTCATGTCTATGATAAGGAGCGGAACTATATTCCATTTGACG
rJMSF019P07+          AGACGATAATGACAATGTGTCATGTCTATGATAAGGAGCGGAACTATATTCCATTTGACG
                      ____________________________________________________________
consensus             AGACGATAATGACAATGTGTCATGTCTATGATAAGGAGCGGAACTATATTCCATTTGACG
 
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rJMSF009G24+          AACTTGCCCCTACCGAATCCCAACCAATCACTTTCCTTAAAAAAGTAATGCCCGAGTACG
rJMSF019P07+          AACTTGCCCCTACCGAATCCCAACCAATCACTTTCCTTAAAAAAGTAATGCCCGAGTACG
                      ____________________________________________________________
consensus             AACTTGCCCCTACCGAATCCCAACCAATCACTTTCCTTAAAAAAGTAATGCCCGAGTACG
 
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rJMSF009G24+          CTTAGCAAATTGATTCTGTATTACTAATCGATTGTTCTTTAGAGCTTCCTCCATTTTTGT
rJMSF019P07+          CTTAGCAAATTGATTCTGTATTACTAATCGATTGTTCTTTAGAGCTTCCTCCATTTTTGT
                      ____________________________________________________________
consensus             CTTAGCAAATTGATTCTGTATTACTAATCGATTGTTCTTTAGAGCTTCCTCCATTTTTGT
 
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rJMSF009G24+          TTGCAGTTAAGCTAGTTTTCTTAGTTCATTTCTATATAAACAGACTTTGTCCCAGACATT
rJMSF019P07+          TTGCAGTTAAGCTAGTTTTCTTAGTTCATTTCTATATAAACAGACTTTGTCCCAGACATT
                      ____________________________________________________________
consensus             TTGCAGTTAAGCTAGTTTTCTTAGTTCATTTCTATATAAACAGACTTTGTCCCAGACATT