Contig 008503:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF014D23Sequence156009029 (9)711008503 (3)ref|XP_009797957.1|4e-19PREDICTED: protein VAC14 homolog isoform X1 [Nicotiana sylvestris]
JMSF018L10Sequence557009029 (9)ref|XP_009764762.1|5e-32PREDICTED: protein VAC14 homolog [Nicotiana sylvestris]771008503 (3)ref|XP_007225206.1|3e-33hypothetical protein PRUPE_ppa002039mg [Prunus persica] gb|EMJ26405.1| hypotheti
JMSF019C14Sequence384009029 (9)ref|XP_009764762.1|2e-13PREDICTED: protein VAC14 homolog [Nicotiana sylvestris]773008503 (3)ref|XP_007225206.1|9e-34hypothetical protein PRUPE_ppa002039mg [Prunus persica] gb|EMJ26405.1| hypotheti

Alignment

This contig is upended


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rJMSF014D23+                                                                  TTCT
rJMSF018L10+                  TATATGGTTNGCTTATGCTGCTACCTCAGCAAAGTGCTGCCTTTAAAGTTCT
rJMSF019C14+                 TTATATGGTTNGCTTATGCTGCTACCTCAGCAAAGTGCTGCCTTTAAAGTTCT
                      ____________________________________________________________
consensus                    TTATATGGTTNGCTTATGCTGCTACCTCAGCAAAGTGCTGCCTTTAAAGTTCT
 
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rJMSF014D23+          TCGGACTAGGTTGAAAACTGTACCCAAATACTCCTTTAATGGGGAACACTTAAGGAGAAC
rJMSF018L10+          TCGGACTAGGTTGAAAACTGTACCCAAATACTCCTTTAATGGGGAACACTTAAGGAGAAC
rJMSF019C14+          TCGGACTAGGTTGAAAACTGTACCCAAATACTCCTTTAATGGGGAACACTTAAGGAGAAC
                      ____________________________________________________________
consensus             TCGGACTAGGTTGAAAACTGTACCCAAATACTCCTTTAATGGGGAACACTTAAGGAGAAC
 
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rJMSF014D23+          AGCATCTGGGAATCCTTATTCTCAAATAAGTTATTTGAGGGGCGGATCACACATTTCAGA
rJMSF018L10+          AGCATCTGGGAATCCTTATTCTCAAATAAGTTATTTGAGGGGCGGATCACACATTTCAGA
rJMSF019C14+          AGCATCTGGGAATCCTTATTCTCAAATAAGTTATTTGAGGGGCGGATCACACATTTCAGA
                      ____________________________________________________________
consensus             AGCATCTGGGAATCCTTATTCTCAAATAAGTTATTTGAGGGGCGGATCACACATTTCAGA
 
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rJMSF014D23+          TGATGGCGACACAAGCGAAGATTCTCNTGATATGCACAACGCAATAAACTTCTCTTCAAG
rJMSF018L10+          TGATGGCGACACAAGCGAAGATTCTCATGATATGCACAACGCAATAAACTTCTCTTCAAG
rJMSF019C14+          TGATGGCGACACAAGCGAAGATTCTCATGATATGCACAACGCAATAAACTTCTCTTCAAG
                      ____________________________________________________________
consensus             TGATGGCGACACAAGCGAAGATTCTCATGATATGCACAACGCAATAAACTTCTCTTCAAG
 
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rJMSF014D23+          GCTGCAGCAGTTTGTTCAGATCCAGCAGCAGCGTCGTGTACATTCTAAGTCTCAAGCTCA
rJMSF018L10+          GCTGCAGCAGTTTGTTCAGATCCAGCAGCAGCGTCGTGTACATTCTAAGTCTCAAGCTCA
rJMSF019C14+          GCTGCAGCAGTTTGTTCAGATCCAGCAGCAGCGTCGTGTACATTCTAAGTCTCAAGCTCA
                      ____________________________________________________________
consensus             GCTGCAGCAGTTTGTTCAGATCCAGCAGCAGCGTCGTGTACATTCTAAGTCTCAAGCTCA
 
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rJMSF014D23+          TTTGTCCCATAACTCCATGTCATCAACAAAGTTCCCTGTTCAGGAGGTACAAAGACCCGA
rJMSF018L10+          TTTGTCCCATAACTCCATGTCATCAACAAAGTTCCCTGTTCAGGAGGTACAAAGACCCGA
rJMSF019C14+          TTTGTCCCATAACTCCATGTCATCAACAAAGTTCCCTGTTCAGGAGGTACAAAGACCCGA
                      ____________________________________________________________
consensus             TTTGTCCCATAACTCCATGTCATCAACAAAGTTCCCTGTTCAGGAGGTACAAAGACCCGA
 
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rJMSF014D23+          AGATTCCAAACCTAACCAAGCCCAAGACTTGAGTAGACCTCCTTCGAGGTCATCTCGTAA
rJMSF018L10+          AGATTCCAAACCTAACCAAGCCCAAGACTTGAGTAGACCTCCTTCGAGGTCATCTCGTAA
rJMSF019C14+          AGATTCCAAACCTAACCAAGCCCAAGACTTGAGTAGACCTCCTTCGAGGTCATCTCGTAA
                      ____________________________________________________________
consensus             AGATTCCAAACCTAACCAAGCCCAAGACTTGAGTAGACCTCCTTCGAGGTCATCTCGTAA
 
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rJMSF014D23+          GGGCCCTGGACAGTTGCAGCTTTGATTATTTTGGCTACCACTCCAAATTGATGTCAAATT
rJMSF018L10+          GGGCCCTGGACAGTTGCAGCTTTGATTATTTTGGCTACCACTCCAAATTGATGTCAAATT
rJMSF019C14+          GGGCCCTGGACAGTTGCAGCTTTGATTATTTTGGCTACCACTCCAAATTGATGTCAAATT
                      ____________________________________________________________
consensus             GGGCCCTGGACAGTTGCAGCTTTGATTATTTTGGCTACCACTCCAAATTGATGTCAAATT
 
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rJMSF014D23+          TATACAGCAATGTAATGCTTTCGGGAAAGCCCAGTTGTGTTCTATTATTATAACTNGTAA
rJMSF018L10+          TATACAGCAATGTAATGCTTTCGGGAAAGCCCAGTTGTGTTCTATTATTATAACTTGTAA
rJMSF019C14+          TATACAGCAATGTAATGCTTTCGGGAAAGCCCAGTTGTGTTCTATTATTATAACTTGTAA
                      ____________________________________________________________
consensus             TATACAGCAATGTAATGCTTTCGGGAAAGCCCAGTTGTGTTCTATTATTATAACTTGTAA
 
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rJMSF014D23+          ATCGGCGGTATATCCTAGTAGTTCGTTCATCTTTTTGACCATTGCGATATTAATATGCTG
rJMSF018L10+          ATTGGCGGTATATCCTAGTAGTTCGTTCATCTTTTTGACCATTGCGATATTAATATGCTG
rJMSF019C14+          ATTGGCGGTATATCCTAGTAGTTCGTTCATCTTTTTGACCATTGCGATATTAATATGCTG
                      ____________________________________________________________
consensus             ATTGGCGGTATATCCTAGTAGTTCGTTCATCTTTTTGACCATTGCGATATTAATATGCTG
 
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rJMSF014D23+          GAATGGAAGGAATCGGGTACTGAAACTAGCCTTGGGGGTGTTCCCAAGCTATTCTTTCAT
rJMSF018L10+          GAATGGAAGGAATCGGGTACTGAAACTAGCCTTGGGGGTGTTCCCAAGCTATTCTTTCAT
rJMSF019C14+          GAATGGAAGGAATCGGGTACTGAAACTAGCCTTGGGGGTGTTCCCAAGCTATTCTTTCAT
                      ____________________________________________________________
consensus             GAATGGAAGGAATCGGGTACTGAAACTAGCCTTGGGGGTGTTCCCAAGCTATTCTTTCAT
 
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rJMSF014D23+          GTTTTTAGTGAACAATGCTCATATGGTAATGTTGTTTTTTATTGAAAACCATATGGGCAA
rJMSF018L10+          GTTTTTAGTGAACAATGCTCATATGGTAATGTTGTTTTTTATTGAAAACCATATGGGCAA
rJMSF019C14+          GTTTTTAGTGAACAATGCTCATATGGTAATGTTGTTTTTTATTGAAAACCATATGGGCAA
                      ____________________________________________________________
consensus             GTTTTTAGTGAACAATGCTCATATGGTAATGTTGTTTTTTATTGAAAACCATATGGGCAA
 
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rJMSF014D23+          TAGGTAGATGTTAGGATATCTGTAAGTTTATATTATTGATAATTCCA             
rJMSF018L10+          TAGGTAGATGTTAGGATATCTGTAAGTTTATATTATTGATAATTCCATGTAAC       
rJMSF019C14+          TAGGTAGATGTTAGGATATCTGTAAGTTTATATTATTGATAATTCCATGTAACCAAGTAT
                      ____________________________________________________________
consensus             TAGGTAGATGTTAGGATATCTGTAAGTTTATATTATTGATAATTCCATGTAACCAAGTAT