Contig 008498:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF027B19Sequence557012895 (3)ref|XP_009598950.1|2e-85PREDICTED: acyl-coenzyme A oxidase 4, peroxisomal isoform X1 [Nicotiana tomento593008498 (2)ref|XP_011095026.1|4e-93PREDICTED: acyl-coenzyme A oxidase 4, peroxisomal [Sesamum indicum]
JMSF018D18Sequence532012895 (3)ref|XP_009598950.1|2e-81PREDICTED: acyl-coenzyme A oxidase 4, peroxisomal isoform X1 [Nicotiana tomento785008498 (2)ref|XP_011095026.1|5e-131PREDICTED: acyl-coenzyme A oxidase 4, peroxisomal [Sesamum indicum]

Alignment

This contig is upended


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rJMSF018D18+                                                                CCAGAT
                      ____________________________________________________________
consensus                                                                   CCAGAT
 
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rJMSF018D18+          AAANGATTCATAGTAAGAAGAACGTACCAGGANTGCAAGCTACAAAAATGGAAAATAAAA
                      ____________________________________________________________
consensus             AAANGATTCATAGTAAGAAGAACGTACCAGGANTGCAAGCTACAAAAATGGAAAATAAAA
 
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rJMSF018D18+          TTGGCCTGAGGATAGTTCAGAATGGAGATATTCTCCTTAACAAAGTTTTTGTACCAGATG
                      ____________________________________________________________
consensus             TTGGCCTGAGGATAGTTCAGAATGGAGATATTCTCCTTAACAAAGTTTTTGTACCAGATG
 
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rJMFF027B19+                                               GAGTAAGGTTCTTGCTGTTTCCA
rJMSF018D18+          AGGACAGGTTACCTGGCGTTAATTCTTTCCAGGATACGAGTAAGGTTCTTGCTGTTT-CA
                      ____________________________________________________________
consensus             AGGACAGGTTACCTGGCGTTAATTCTTTCCAGGATACGAGTAAGGTTCTTGCTGTTTCCA
 
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rJMFF027B19+          CGTGTTATGGTGGCCTGGCAACCTATTGGCATTTCGATGGGTGTTTATGATGTTTGCCAC
rJMSF018D18+          CGTGTTATGGTGGCCTGGCAACCTATTGGCATTTCGATGGGTGTTTATGATGTTTGCCAC
                      ____________________________________________________________
consensus             CGTGTTATGGTGGCCTGGCAACCTATTGGCATTTCGATGGGTGTTTATGATGTTTGCCAC
 
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rJMFF027B19+          AGGTACTTGAAAGAGAGGAAGCAGTTTGGCGCTCCTCTGGCAGCTTTCCAGATCAACCAA
rJMSF018D18+          AGGTACTTGAAAGAGAGGAAGCAGTTTGGCGCTCCTCTGGCAGCTTTCCAGATCAACCAA
                      ____________________________________________________________
consensus             AGGTACTTGAAAGAGAGGAAGCAGTTTGGCGCTCCTCTGGCAGCTTTCCAGATCAACCAA
 
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rJMFF027B19+          CAGAAACTGGTCCAGATGCTGTCAAACATTCAAGCAATGCTTCTTGTTGGGTGGCGGCTT
rJMSF018D18+          CAGAAACTGGTCCAGATGCTGTCAAACATTCAAGCAATGCTTCTTGTTGGGTGGCGGCTT
                      ____________________________________________________________
consensus             CAGAAACTGGTCCAGATGCTGTCAAACATTCAAGCAATGCTTCTTGTTGGGTGGCGGCTT
 
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rJMFF027B19+          TGCAAGCTGTACGAGAGTGGTAAAATGACTCCTGGCCATGCGAGCATGGGGAAATCCTGG
rJMSF018D18+          TGCAAGCTGTACGAGAGTGGTAAAATGACTCCTGGCCATGCGAGCATGGGGAAATCCTGG
                      ____________________________________________________________
consensus             TGCAAGCTGTACGAGAGTGGTAAAATGACTCCTGGCCATGCGAGCATGGGGAAATCCTGG
 
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rJMFF027B19+          ATTACACTGAAGGCAAGGGAGACTGTTTCACTTGGCCGGGAATTACTAGGAGGCAATGGC
rJMSF018D18+          ATTACACTGAAGGCAAGGGAGACTGTTTCACTTGGCCGGGAATTACTAGGAGGCAATGGC
                      ____________________________________________________________
consensus             ATTACACTGAAGGCAAGGGAGACTGTTTCACTTGGCCGGGAATTACTAGGAGGCAATGGC
 
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rJMFF027B19+          ATCTTGACTGACTTTCTAGTAGCAAAGGCGTTTTGCGACTTGGAGCCAATCTACACGTAC
rJMSF018D18+          ATCTTGACTGACTTTCTAGTAGCAAAGGCGTTTTGCGACTTGGAGCCAATCTACACGTAC
                      ____________________________________________________________
consensus             ATCTTGACTGACTTTCTAGTAGCAAAGGCGTTTTGCGACTTGGAGCCAATCTACACGTAC
 
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rJMFF027B19+          GAAGGAACCTACGACATCAACACCCTAGTAACAGGCAGAGAAATCACTGGTATTGCAAGC
rJMSF018D18+          GAAGGAACCTACGACATCAACACCCTAGTAACAGGCAGAGAAATCACTGGTATTGCAAGC
                      ____________________________________________________________
consensus             GAAGGAACCTACGACATCAACACCCTAGTAACAGGCAGAGAAATCACTGGTATTGCAAGC
 
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rJMFF027B19+          TTTAAGCCTCCTGCTGCTGCTTTGAGTAAAAGGAGTCGCCTATAATCAACTCTTCTTCAT
rJMSF018D18+          TTTAAGCCTCCTGCTGCTGCTTTGAGTAAAAGGAGTCGCCTATAATCAACTCTTCTTCAT
                      ____________________________________________________________
consensus             TTTAAGCCTCCTGCTGCTGCTTTGAGTAAAAGGAGTCGCCTATAATCAACTCTTCTTCAT
 
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rJMFF027B19+          TAATAATCCTAGTGTGTGGTTGACTGGTTGGTAGTCCCATTGTGAACTCTGTTGAATAGG
rJMSF018D18+          TAATAATCCTAGTGTGTGGTTGACTGGTTGGTAGTCCCATTGTGAACTCTGTTGAATAGG
                      ____________________________________________________________
consensus             TAATAATCCTAGTGTGTGGTTGACTGGTTGGTAGTCCCATTGTGAACTCTGTTGAATAGG
 
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rJMFF027B19+          GAAGGTAAAACATTTACATTTGCACAAGCT                              
rJMSF018D18+          GAAGGTAAAACATTTACATTTGCACAAGCTGAAACAATAAAGTGCAAAATTACAATTTTT
                      ____________________________________________________________
consensus             GAAGGTAAAACATTTACATTTGCACAAGCTGAAACAATAAAGTGCAAAATTACAATTTTT