Contig 008497:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF004N13Sequence479000895 (4)sp|P55004.1|PHYE_IPONI5e-89RecName: Full=Phytochrome E [Ipomoea nil] gb|AAA84970.1| phytochrome E [Ipomoea 761008497 (4)sp|P55004.1|PHYE_IPONI3e-123RecName: Full=Phytochrome E [Ipomoea nil] gb|AAA84970.1| phytochrome E [Ipomoea
JMSF018B15Sequence377000895 (4)sp|P55004.1|PHYE_IPONI4e-65RecName: Full=Phytochrome E [Ipomoea nil] gb|AAA84970.1| phytochrome E [Ipomoea 464008497 (4)sp|P55004.1|PHYE_IPONI5e-16RecName: Full=Phytochrome E [Ipomoea nil] gb|AAA84970.1| phytochrome E [Ipomoea
JMSF027M20Sequence670000895 (4)sp|P55004.1|PHYE_IPONI3e-134RecName: Full=Phytochrome E [Ipomoea nil] gb|AAA84970.1| phytochrome E [Ipomoea 721008497 (4)sp|P55004.1|PHYE_IPONI4e-112RecName: Full=Phytochrome E [Ipomoea nil] gb|AAA84970.1| phytochrome E [Ipomoea
JMSF039H06Sequence682000895 (4)sp|P55004.1|PHYE_IPONI8e-138RecName: Full=Phytochrome E [Ipomoea nil] gb|AAA84970.1| phytochrome E [Ipomoea 853008497 (4)sp|P55004.1|PHYE_IPONI2e-136RecName: Full=Phytochrome E [Ipomoea nil] gb|AAA84970.1| phytochrome E [Ipomoea

Alignment

This contig is upended


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rJMSF039H06+                                                   GCTCCTTGAAGGTACCGTT
                      ____________________________________________________________
consensus                                                      GCTCCTTGAAGGTACCGTT
 
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rJMSF039H06+          ACTTCAGATCATCAGGAAACAGTTTCTCGAGACAAGTGAAGCCTGTGAAAAACAGATACT
                      ____________________________________________________________
consensus             ACTTCAGATCATCAGGAAACAGTTTCTCGAGACAAGTGAAGCCTGTGAAAAACAGATACT
 
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rJMFF004N13+                  TCGAGAATATGGATAGTGGAGGCATCGTGGATGGCAACAGAGTGGAGCTAAA
rJMSF027M20+                                                     AACAGAGTGGAGCTAAA
rJMSF039H06+          CTCTATAATCGAGAATATGGATAGTGGAGGCATCGTGGATGGCAACAGAGTGGAGCTAAA
                      ____________________________________________________________
consensus             CTCTATAATCGAGAATATGGATAGTGGAGGCATCGTGGATGGCAACAGAGTGGAGCTAAA
 
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rJMFF004N13+          GACGGAAGAGTTTGTTATAGGAAATGTGATAGATGCAGTTGTTAGTCAAGTTATGATCCC
rJMSF027M20+          GACGGAAGAGTTTGTTATAGG---TGTGATAGATGCAGTTGTTAGTCAAGTTATGATCCC
rJMSF039H06+          GACGGAAGAGTTTGTTATAGGAAATGTGATAGATGCAGTTGTTAGTCAAGTTATGATCCC
                      ____________________________________________________________
consensus             GACGGAAGAGTTTGTTATAGGAAATGTGATAGATGCAGTTGTTAGTCAAGTTATGATCCC
 
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rJMFF004N13+          GCTGAAGGAGAAGAATTTACAGCTACTTCATGATATTCCGGACCAGATCAAATCTCTCCC
rJMSF027M20+          GCTGAAGGAGAAGAATTTACAGCTACTTCATGATATTCCGGACCAGATCAAATCTCTCCC
rJMSF039H06+          GCTGAAGGAGAAGAATTTACAGCTACTTCATGATATTCCGGACCAGATCAAATCTCTCCC
                      ____________________________________________________________
consensus             GCTGAAGGAGAAGAATTTACAGCTACTTCATGATATTCCGGACCAGATCAAATCTCTCCC
 
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rJMFF004N13+          TATATACGGGGATCAAATTAAGCTTCAGCTTGTCCTATCGGATTTCTTGCTCAGCATAGT
rJMSF027M20+          TATATACGGGGATCAAATTAAGCTTCAGCTTGTCCTATCGGATTTCTTGCTCAGCATAGT
rJMSF039H06+          TATATACGGGGATCAAATTAAGCTTCAGCTTGTCCTATCGGATTTCTTGCTCAGCATAGT
                      ____________________________________________________________
consensus             TATATACGGGGATCAAATTAAGCTTCAGCTTGTCCTATCGGATTTCTTGCTCAGCATAGT
 
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rJMFF004N13+          GCGCCACGCACCTTCTCCAGATGGTTGGGTGGAAATAAGGGTATCCCCGGGGTTGAAGCT
rJMSF027M20+          GCGCCACGCACCTTCTCCAGATGGTTGGGTGGAAATCAGGGTATCCCCGGGGTTGAAGCT
rJMSF039H06+          GCGCCACGCACCTTCTCCAGATGGTTGGGTGGAAATCAGGGTATCCCCGGGGTTGAAGCT
                      ____________________________________________________________
consensus             GCGCCACGCACCTTCTCCAGATGGTTGGGTGGAAATCAGGGTATCCCCGGGGTTGAAGCT
 
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rJMFF004N13+          GATTCAAGACGGGAATGAGTTTATCCATATCCAGTTCAGAATGACTCATCCCGGGCAAGG
rJMSF027M20+          GATTCAAGACGGGAATGAGTTTATCCATATCCAGTTCAGAATGACTCATCCCGGGCAAGG
rJMSF039H06+          GATTCAAGACGGGAATGAGTTTATCCATATCCAGTTCAGAATGACTCATCCCGGGCAAGG
                      ____________________________________________________________
consensus             GATTCAAGACGGGAATGAGTTTATCCATATCCAGTTCAGAATGACTCATCCCGGGCAAGG
 
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rJMFF004N13+          CCTCCCTTCTGCTCTTATCGAAGACATGGTAAGAGGAGGAACTCGATGGACAACACAAGA
rJMSF027M20+          CCTCCCTTCTGCTCTTATCGAAGACATGGTAAGAGGAGGAACTCGATGGACAACACAAGA
rJMSF039H06+          CCTCCCTTCTGCTCTTATCGAAGACATGGTAAGAGGAGGAACTCGATGGACAACACAAGA
                      ____________________________________________________________
consensus             CCTCCCTTCTGCTCTTATCGAAGACATGGTAAGAGGAGGAACTCGATGGACAACACAAGA
 
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rJMFF004N13+          AGGAGTTGTCTTACATTTGTCACAGAAACTAGTTAGAATGATGAATGGTCATGTCCATTA
rJMSF027M20+          AGGAGTTGTCTTACATTTGTCACAGAAACTAGTTAGAATGATGAATGGTCATGTCCATTA
rJMSF039H06+          AGGAGTTGTCTTACATTTGTCACAGAAACTAGTTAGAATGATGAATGGTCATGTCCATTA
rJMSF018B15+                          TTGTCACAGNAACTAGTTAGANTGATGAATGGTCATGTCCATTA
                      ____________________________________________________________
consensus             AGGAGTTGTCTTACATTTGTCACAGAAACTAGTTAGAATGATGAATGGTCATGTCCATTA
 
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rJMFF004N13+          CGTGAGAGAACAACAAAAGTGCTACTTCCTAATCGACCTTGATTTCAAAACGCAAAAACC
rJMSF027M20+          CGTGAGAGAACAACAAAAGTGCTACTTCCTAATCGACCTTGATTTCAAAACGCAAAAACC
rJMSF039H06+          CGTGAGAGAACAACAAAAGTGCTACTTCCTAATCGACCTTGATTTCAAAACGCAAAAACC
rJMSF018B15+          CGTGAGAGANCAACAAAAGTGCTNCTTCCTAATCGACCTTGNTTTCAAAACGCAAANACC
                      ____________________________________________________________
consensus             CGTGAGAGAACAACAAAAGTGCTACTTCCTAATCGACCTTGATTTCAAAACGCAAAAACC
 
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rJMFF004N13+          AAGGTCACGGGAGTCAAGTATGGATACGAAGGCAGAATAACCTGATTCTATCTCGAGATA
rJMSF027M20+          AAGGTCACGGGAGTCAAGTATGGATACGAAGGCAGAATAACCTGATTCTATCTCGAGATA
rJMSF039H06+          AAGGTCACGGGAGTCAAGTATGGATACGAAGGCAGAATAACCTGATTCTATCTCGAGATA
rJMSF018B15+          AAGGTCACGGGAGTCAAGTATGGATACGAAGGCAGAATAACCTGATTCTATCTCGAGATA
                      ____________________________________________________________
consensus             AAGGTCACGGGAGTCAAGTATGGATACGAAGGCAGAATAACCTGATTCTATCTCGAGATA
 
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rJMFF004N13+          ATTTTTTCCTCGATCTCCATTGAGTCAGGTACACAATTTTAAAAACACATCTATTATGTG
rJMSF027M20+          ATTTTTTCCTCGATCTCCATTGAGTCAGGTACACAATTTTAAAAACACATCTATTATGTG
rJMSF039H06+          ATTTTTTCCTCGATCTCCATTGAGTCAGGTACACAATTTTAAAAACACATCTATTATGTG
rJMSF018B15+          ATTTTTTCCTCGATCTCCATTGAGTCAGNTACACAATTTTAAANACACATCTATTATGTG
                      ____________________________________________________________
consensus             ATTTTTTCCTCGATCTCCATTGAGTCAGGTACACAATTTTAAAAACACATCTATTATGTG
 
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rJMFF004N13+          ATTCTGTCACTTGCTTCCCTATTGTCTTTTCCCAATATCCATCTTTGGGTGATTGGTTCT
rJMSF027M20+          ATTCTGTCACTTGCTTCCCTATTGTCTTTTCCCAATATCCATCTTTGGGTGATTGGTTCT
rJMSF039H06+          ATTCTGTCACTTGCTTCCCTATTGTCTTTTCCCAATATCCATCTTTGGGTGATTGGTTCT
rJMSF018B15+          ATTCTGTCACTTGCTTCCCTATTGTCTTTTCCCAATATCCATCTTTGGGTGATTGGTTNT
                      ____________________________________________________________
consensus             ATTCTGTCACTTGCTTCCCTATTGTCTTTTCCCAATATCCATCTTTGGGTGATTGGTTCT
 
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rJMFF004N13+          TATTTAAGATCAGCTAAACTGAC                                     
rJMSF027M20+          TATTTAAGATCAGCTAAACTGAC                                     
rJMSF039H06+          TATTTAAGATCAGCTAAACTGAC                                     
rJMSF018B15+          TATNTAAGATCAGCTAAACTGACATTTGAGAAAGTAAATTGCTGCGANGAATGATATGTA
                      ____________________________________________________________
consensus             TATTTAAGATCAGCTAAACTGACATTTGAGAAAGTAAATTGCTGCGANGAATGATATGTA
 
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rJMSF018B15+          TGTCNGTATGTATGTATAATTCCNCACTATAAACTNGTCAGATCNTANGTAAGAAGTNAG
                      ____________________________________________________________
consensus             TGTCNGTATGTATGTATAATTCCNCACTATAAACTNGTCAGATCNTANGTAAGAAGTNAG
 
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rJMSF018B15+          NGGGCTGGATTTCCATTCCCANTCCCCTCAAACGCACAAACATATAGGTATGAAAGCCGG
                      ____________________________________________________________
consensus             NGGGCTGGATTTCCATTCCCANTCCCCTCAAACGCACAAACATATAGGTATGAAAGCCGG