Contig 008493:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMSF017J07-                                                       TCATCATCATAATCAA
JMSF028D22-                                                     GGTCATCATCATAATCAA
                      ____________________________________________________________
consensus                                                       GGTCATCATCATAATCAA
 
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JMSF017J07-           CAATCTAGCTTAATTAGCGTGCTAGCTACCATGGCCTACTCAAAGCCTTTCTCTCTTCTC
JMSF028D22-           CAATCTAGCTTAATTAGCGTGCTAGCTACCATGGCCTACTCAAAGCCTTTCTCTCTTCTC
                      ____________________________________________________________
consensus             CAATCTAGCTTAATTAGCGTGCTAGCTACCATGGCCTACTCAAAGCCTTTCTCTCTTCTC
 
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JMSF017J07-           CCTTTGCTTTCCATTGCTTTCATCCTTGCACTGCACACACCCATGGCGGCTGCCCAACTC
JMSF028D22-           CCTTTGCTTTCCATTGCTTTCATCCTTGCACTGCACACACCCATGGCGGCTGCCCAACTC
                      ____________________________________________________________
consensus             CCTTTGCTTTCCATTGCTTTCATCCTTGCACTGCACACACCCATGGCGGCTGCCCAACTC
 
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JMSF017J07-           CGCCATTTCTGTGCAAACTTTGCAACCTCCCCTCCCGACTCCCGCTTCCAAAAAAACTTA
JMSF028D22-           CGCCATTTCTGTGCAAACTTTGCAACCTCCCCTCCCGACTCCCGCTTCCAAAAAAACTTA
                      ____________________________________________________________
consensus             CGCCATTTCTGTGCAAACTTTGCAACCTCCCCTCCCGACTCCCGCTTCCAAAAAAACTTA
 
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JMSF017J07-           AACACACTTTTGGGTAACCTCTCCTCCAACACACCACGCAACGGTTATAGTTCCGGC   
JMSF028D22-           AACACACTTTTGGGTAACCTCTCCTCCAACACACCACGCAACGGTTATAGTTCCGGCACC
                      ____________________________________________________________
consensus             AACACACTTTTGGGTAACCTCTCCTCCAACACACCACGCAACGGTTATAGTTCCGGCACC
 
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JMSF028D22-           GCGGGTAAATGCACCGACAAAGTCTACGGCCTGGCTCTCTGCCGTGGCGACGTCTCCACC
rJMSF017J07+                                                                  CACC
                      ____________________________________________________________
consensus             GCGGGTAAATGCACCGACAAAGTCTACGGCCTGGCTCTCTGCCGTGGCGACGTCTCCACC
 
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JMSF028D22-           ACAGACTGCAAGTCTTGCGTAGCCGACGCCACCACCAAGATACGTGAACTCTGCCCCAAA
rJMSF028D22+                                  GACGCCACCACCAAGATACGTGAACTCTGCCCCAAA
rJMSF017J07+          ACAGACTGCAAGTCTTGCGTAGCCGACGCCACCACCAAGATACGTGAACTCTGCCCCAAA
                      ____________________________________________________________
consensus             ACAGACTGCAAGTCTTGCGTAGCCGACGCCACCACCAAGATACGTGAACTCTGCCCCAAA
 
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JMSF028D22-           AACAATGGCGGCATCGTCTGGTACGATAATTGTCTTCTCAAGTACTCGGAGGATGATTTC
rJMSF028D22+          AACAANGGCGGCATCGTCTGGTACGATAATTGTCTTCTCAAGTACTCGGAGGATGATTTC
rJMSF017J07+          AACAATGGCGGCATCGTCTGGTACGATAATTGTCTTCTCAAGTACTCGGAGGATGATTTC
                      ____________________________________________________________
consensus             AACAATGGCGGCATCGTCTGGTACGATAATTGTCTTCTCAAGTACTCGGAGGATGATTTC
 
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JMSF028D22-           TTTGGGGAAATAGACGACGTGAATAAATTCTATATGGCTAACGGGGAAGAGGCGAANGAT
rJMSF028D22+          TTTGGGGAAATAGACGACGTGAATAAATTCTATATGGCTAACGGGGAAGAGGCGAAGGAT
rJMSF017J07+          TTTGGGGAAATAGACGACGTGAATAAATTCTATATGGCTAACGGGGAAGAGGCGAAGGAT
                      ____________________________________________________________
consensus             TTTGGGGAAATAGACGACGTGAATAAATTCTATATGGCTAACGGGGAAGAGGCGAAGGAT
 
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JMSF028D22-           CCAAAGTCATTCATGCAGAAAACGAAACAGCTGTTGACCCGACTGGCGGATAAGGCGGCG
rJMSF028D22+          CCAAAGTCATTCATGCAGAAAACGAAACAGCTGTTGACCCGACTGGCGGATAAGGCGGCG
rJMSF017J07+          CCAAAGTCATTCATGCAGAAAACGAAACAGCTGTTGACCCGACTGGCGGATAAGGCGGCG
                      ____________________________________________________________
consensus             CCAAAGTCATTCATGCAGAAAACGAAACAGCTGTTGACCCGACTGGCGGATAAGGCGGCG
 
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JMSF028D22-           CTGCTGAAGAGCTCGTACGCGGCGGGA                                 
rJMSF028D22+          CTGCTGAAGAGCTCGTACGCGGCGGGAGTGGAGGATATCGGGGGATCATCGGTGATTTAC
rJMSF017J07+          CTGCTGAAGAGCTCGTACGCGGCGGGAGTGGAGGATATCGGGGGATCATCGGTGATTTAC
                      ____________________________________________________________
consensus             CTGCTGAAGAGCTCGTACGCGGCGGGAGTGGAGGATATCGGGGGATCATCGGTGATTTAC
 
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rJMSF028D22+          GGGTTGACTCAGTGCACCAGGGATCTCTCCGGCGAGGATTGTAAGAAGTGCCTCTACGAC
rJMSF017J07+          GGGTTGACTCAGTGCACCAGGGATCTCTCCGGCGAGGATTGTAAGAAGTGCCTCTACGAC
                      ____________________________________________________________
consensus             GGGTTGACTCAGTGCACCAGGGATCTCTCCGGCGAGGATTGTAAGAAGTGCCTCTACGAC
 
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rJMSF028D22+          GCCATTGCAGAGCTTCCACAGTGCTGTGGTACTGCCAAAGTGGGAGGGAGAGTTATCCAA
rJMSF017J07+          GCCATTGCAGAGCTTCCACAGTGCTGTGGTACTGCCAAAGTGGGAGGGAGAGTTATCCAA
                      ____________________________________________________________
consensus             GCCATTGCAGAGCTTCCACAGTGCTGTGGTACTGCCAAAGTGGGAGGGAGAGTTATCCAA
 
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rJMSF028D22+          GGGAGTTGCAATTTTCGATACGAAACGTATCCTTTTTATAAAGGTGCNTGAAAATAAATA
rJMSF017J07+          GGGAGTTGCAATTTTCGATACGAAACGTATCCTTTTTATAAAGGTGCTTGAAAATAAATA
                      ____________________________________________________________
consensus             GGGAGTTGCAATTTTCGATACGAAACGTATCCTTTTTATAAAGGTGCTTGAAAATAAATA
 
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rJMSF028D22+          CAAGAAAGGAAGAAATGCTACAGCTAGCTAGCTAGCTACCTCGCTTCTTTAGTATGTTAC
rJMSF017J07+          CAAGAAAGGAAGAAATGCTACAGCTAGCTAGCTAGCTACCTCGCTTCTTTAGTATGTTAC
                      ____________________________________________________________
consensus             CAAGAAAGGAAGAAATGCTACAGCTAGCTAGCTAGCTACCTCGCTTCTTTAGTATGTTAC
 
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rJMSF028D22+          TATATATATATATATGTTATCTGTATAAATAAAAAGGGCGCCCCTGTAAGAGCTGTCCCT
rJMSF017J07+          TATATATATATATATGTTATCTGTATAAATAAAAAGGGCGCCCCTGTAAGAGCTGTCCCT
                      ____________________________________________________________
consensus             TATATATATATATATGTTATCTGTATAAATAAAAAGGGCGCCCCTGTAAGAGCTGTCCCT
 
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rJMSF028D22+          AATATAATCAAGTCTGAGTCGGACTCGGTTATATTCTGATCTTTACTTTTGGCGCGTGGT
rJMSF017J07+          AATATAATCAAGTCTGAGTCGGACTCGGTTATATTCTGATCTTTACTTTTGGCGCGTGGT
                      ____________________________________________________________
consensus             AATATAATCAAGTCTGAGTCGGACTCGGTTATATTCTGATCTTTACTTTTGGCGCGTGGT
 
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rJMSF028D22+          TTTCTTTGTTAAAGTGCGTTGTTTTATGTGGGNGGTT                       
rJMSF017J07+          TTTCTTTGTTAAAGTGCGTTGTTTTATGTGGGTGGTTTTATAACTTAATTAAGGTGCGTA
                      ____________________________________________________________
consensus             TTTCTTTGTTAAAGTGCGTTGTTTTATGTGGGTGGTTTTATAACTTAATTAAGGTGCGTA