Contig 008489:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF016C21+                                                     AATTGGGTTNTCCATGC
                      ____________________________________________________________
consensus                                                        AATTGGGTTNTCCATGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF016C21+          CATACAACATGCAAGTGCAAACACCTACCCTTGTGCAGCCAATAAAATCATCAAATCCTT
rJMSF016L05+              CAACATGCAAGTGCAAACACCTACCCTTGTGCAGCCAATAAAATCATCAAATCCTT
                      ____________________________________________________________
consensus             CATACAACATGCAAGTGCAAACACCTACCCTTGTGCAGCCAATAAAATCATCAAATCCTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF016C21+          TTGACGCAACCAGTGAGCCCTCTCCTTTACAAGCTTCAACGTTTCCATCAATGGCTTCAT
rJMSF016L05+          TTGACGCAACCAGTGAGCCCTCTCCTTTACAAGCTTCAACGTTTCCATCAATGGCTTCAT
                      ____________________________________________________________
consensus             TTGACGCAACCAGTGAGCCCTCTCCTTTACAAGCTTCAACGTTTCCATCAATGGCTTCAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF016C21+          TACAAGGTGCACTGCCAAACGTGGGAGCTCCAACAGGCTTGCATCGCACATCCAGCCTTG
rJMSF016L05+          TACAAGGTGCACTGCCAAACGTGGGAGCTCCAACAGGCTTGCATCGCACATCCAGCCTTG
                      ____________________________________________________________
consensus             TACAAGGTGCACTGCCAAACGTGGGAGCTCCAACAGGCTTGCATCGCACATCCAGCCTTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF016C21+          GGACCCCTACGCCTCATCCATACAGAATGCCTCAGCAGCCACCATNTTATGCTTCAACAC
rJMSF016L05+          GGACCCCTACGCCTCATCCATACAGAATGCCTCAGCAGCCACCATCTTATGCTTCAACAC
                      ____________________________________________________________
consensus             GGACCCCTACGCCTCATCCATACAGAATGCCTCAGCAGCCACCATCTTATGCTTCAACAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF016C21+          AACCTCCAAATGCATATATGGGCCAAAATCTAGCTGGTAGCATGCCACAAAGGCCACGTG
rJMSF016L05+          AACCTCCAAATGCATATATGGGCCAAAATCTAGCTGGTAGCATGCCACAAAGGCCACGTG
                      ____________________________________________________________
consensus             AACCTCCAAATGCATATATGGGCCAAAATCTAGCTGGTAGCATGCCACAAAGGCCACGTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF016C21+          ACCAAGCATTAGGCTTTGGCCTTGATGGGGCTGCGTTTGGAGCTATGCATACAAGTCAGC
rJMSF016L05+          ACCAAGCATTAGGCTTTGGCCTTGATGGGGCTGCGTTTGGAGCTATGCATACAAGTCAGC
                      ____________________________________________________________
consensus             ACCAAGCATTAGGCTTTGGCCTTGATGGGGCTGCGTTTGGAGCTATGCATACAAGTCAGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF016C21+          AGCTTGGTGGACTACATGCAGCTCCTGCTGCCCAGAATACCTTCTCTCCTCCTGCTGGGA
rJMSF016L05+          AGCTTGGTGGACTACATGCAGCTCCTGCTGCCCAGAATACCTTCTCTCCTCCTGCTGGGA
                      ____________________________________________________________
consensus             AGCTTGGTGGACTACATGCAGCTCCTGCTGCCCAGAATACCTTCTCTCCTCCTGCTGGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF016C21+          ACCCATTTGGGTGAACAGCAGAAACAACTTGGTGATTGCATCAATAATTGCCAGGCTNTG
rJMSF016L05+          ACCCATTTGGGTGAACAGCAGAAACAACTTGGTGATTGCATCAATAATTGCCAGGCTNTG
                      ____________________________________________________________
consensus             ACCCATTTGGGTGAACAGCAGAAACAACTTGGTGATTGCATCAATAATTGCCAGGCTNTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF016C21+          ATATATCTCTTGTGTGTGATGCCCCGAGTGGTGAGTGACTACAATTACACATCGAAAGTG
rJMSF016L05+          ATATATCTCTTGTGTGTGATGCCCCGAGTGGTGAGTGACTACAATTACACATCGAAAGTG
                      ____________________________________________________________
consensus             ATATATCTCTTGTGTGTGATGCCCCGAGTGGTGAGTGACTACAATTACACATCGAAAGTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF016C21+          TGATTTATGGGGCTAGCCGCATGCATCTGCGCCAACTGATTGCATTTTGTGCTGCACCTA
rJMSF016L05+          TGATTTATGGGGCTAGCCGCATGCATCTGCGCCAACTGATTGCATTTTGTGCTGCACCTA
                      ____________________________________________________________
consensus             TGATTTATGGGGCTAGCCGCATGCATCTGCGCCAACTGATTGCATTTTGTGCTGCACCTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF016C21+          CATGTGTATTATTGTAATAGTTTTCGTGGGTGTTATCCACTTTCCTCTTTATTTTTATTT
rJMSF016L05+          CATGTGTATTATTGTAATAGTTTTCGTGGGTGTTATCCACTTTCCTCTTTATTTTTATTT
                      ____________________________________________________________
consensus             CATGTGTATTATTGTAATAGTTTTCGTGGGTGTTATCCACTTTCCTCTTTATTTTTATTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF016C21+          TCTTTTTATCAATGTGTATTATTTTGAAGATAGGAATTTTTTTTTTCTTTGTGGTAAGT 
rJMSF016L05+          TCTTTTTATCAATGTGTATTATTTTGAAGATAGGAATTTTTTTTTTCTTTGTGGTAAGTT
                      ____________________________________________________________
consensus             TCTTTTTATCAATGTGTATTATTTTGAAGATAGGAATTTTTTTTTTCTTTGTGGTAAGTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF016L05+          TCTTTGAATGATCAAATTTGATTATACAGGTTGTATTGGTAGTACCTGTAGAGATCTACA
                      ____________________________________________________________
consensus             TCTTTGAATGATCAAATTTGATTATACAGGTTGTATTGGTAGTACCTGTAGAGATCTACA