Contig 008488:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF016K13Sequence244000512 (5)794008488 (2)ref|XP_006451873.1|4e-77hypothetical protein CICLE_v10010681mg [Citrus clementina] gb|ESR65113.1| hypoth
JMSF047K24Sequence617000512 (5)emb|CDP05915.1|2e-19unnamed protein product [Coffea canephora]276008488 (2)emb|CAN77048.1|3e-14hypothetical protein VITISV_027858 [Vitis vinifera]

Alignment

This contig is upended


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rJMSF016K13+                                                        GGATGGATGGATCG
                      ____________________________________________________________
consensus                                                           GGATGGATGGATCG
 
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rJMSF016K13+          AAGTGAACGAGGTGATCGTGAGGGTGGTCACCATGGTAGCCTTCNTCNTGCAAGCCCGCC
                      ____________________________________________________________
consensus             AAGTGAACGAGGTGATCGTGAGGGTGGTCACCATGGTAGCCTTCNTCNTGCAAGCCCGCC
 
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rJMSF016K13+          TCCTGCAGNTAGCATGGAGCGCGAAATGGGAAACCGGGAATGGAAAAGGGCTGTGGGTAT
                      ____________________________________________________________
consensus             TCCTGCAGNTAGCATGGAGCGCGAAATGGGAAACCGGGAATGGAAAAGGGCTGTGGGTAT
 
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rJMSF016K13+          CAGAGAGGAAAACAGTGTTTGTTTCCTTCCCTCTNTACATTGCAGGTGGATTGCTCACCA
                      ____________________________________________________________
consensus             CAGAGAGGAAAACAGTGTTTGTTTCCTTCCCTCTNTACATTGCAGGTGGATTGCTCACCA
 
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rJMSF016K13+          TCCTGGTGAAATGGATGTGCAACAAAAACATGGCTACAGGGACAACATTATCTTATTATT
                      ____________________________________________________________
consensus             TCCTGGTGAAATGGATGTGCAACAAAAACATGGCTACAGGGACAACATTATCTTATTATT
 
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rJMSF016K13+          CTCCCTATCAGGACAACATTAATCCACAATCTTCCACCTGGGGTGGTTTAAGGTCATACG
                      ____________________________________________________________
consensus             CTCCCTATCAGGACAACATTAATCCACAATCTTCCACCTGGGGTGGTTTAAGGTCATACG
 
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rJMSF016K13+          CAGGATTCATTCTGGACGGTTTTCTGTTCCCACAGGTTCTCTTCAACATCTTCCACAGCT
                      ____________________________________________________________
consensus             CAGGATTCATTCTGGACGGTTTTCTGTTCCCACAGGTTCTCTTCAACATCTTCCACAGCT
 
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rJMSF016K13+          CAAGAGAGGCGGCGCTGTCGCGGTGGTTCTACATGGGGACCACCTTAGTGCGCCTGCTGC
                      ____________________________________________________________
consensus             CAAGAGAGGCGGCGCTGTCGCGGTGGTTCTACATGGGGACCACCTTAGTGCGCCTGCTGC
 
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rJMSF016K13+          CACACGCGTATGATCTTTACAGGGTTCACAACTATGCTGCTGCCATGGAAGTAGAAGGGT
                      ____________________________________________________________
consensus             CACACGCGTATGATCTTTACAGGGTTCACAACTATGCTGCTGCCATGGAAGTAGAAGGGT
 
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rJMSF047K24+                          CCCGAGGGCGGATTTCTACTCCNCGGCTTGGGATATCATCATTC
rJMSF016K13+          CGTACTTGTACGCGAACCCGAGGGCGGATTTCTACTCCACGGCTTGGGATATCATCATTC
                      ____________________________________________________________
consensus             CGTACTTGTACGCGAACCCGAGGGCGGATTTCTACTCCACGGCTTGGGATATCATCATTC
 
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rJMSF047K24+          CCTGCCTGGGAATGCTGTCGGCTGNGATCATTNGGNTGCAGCAGCGGTTCGGTGGCCGGT
rJMSF016K13+          CCTGCCTGGGAATGCTGTTGGCTGTGATCATTTGGTTGCAGCAGCGGTTCGGTGGCCGGT
                      ____________________________________________________________
consensus             CCTGCCTGGGAATGCTGTTGGCTGTGATCATTTGGTTGCAGCAGCGGTTCGGTGGCCGGT
 
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rJMSF047K24+          GTCTGCNTCCCCGGAGNTTCAGAGANTCTNTGGCGTATGAGAAAGTTGNGGCTGANGATA
rJMSF016K13+          GTTTGCTTCCCCGGAGGTTCAGAGATTCTGTGGCGTATGAGAAAGTTGTGGCTGATGATA
                      ____________________________________________________________
consensus             GTTTGCTTCCCCGGAGGTTCAGAGATTCTGTGGCGTATGAGAAAGTTGTGGCTGATGATA
 
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rJMSF047K24+          GCGGTGCATANTTGTNGTGGNGATTTCAAGCCTCTCATGTTTTTGGACTTTACAAAGCTC
rJMSF016K13+          GCGGTGCATAGTTGTTGTGGTGATTTCAAGCCTCTCATGTTTTTGGACTTTACAAAGCTC
                      ____________________________________________________________
consensus             GCGGTGCATAGTTGTTGTGGTGATTTCAAGCCTCTCATGTTTTTGGACTTTACAAAGCTC
 
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rJMSF047K24+          ATTTCAAGATCAGAGTCATTTTTCTGGCTCTGGCTGAC                      
rJMSF016K13+          ATTTCAAGATCAGAGTCATTTTTCTGGCTCTGGCTGACCTATGTTGTTATGTGTTAAACC
                      ____________________________________________________________
consensus             ATTTCAAGATCAGAGTCATTTTTCTGGCTCTGGCTGACCTATGTTGTTATGTGTTAAACC