Contig 008486:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN016I24Sequence622008486 (4)ref|XP_006361762.1|3e-49PREDICTED: armadillo repeat-containing protein 8-like [Solanum tuberosum]
JMSF013F23Sequence455007822 (4)ref|XP_009790467.1|1e-17PREDICTED: armadillo repeat-containing protein 8 isoform X2 [Nicotiana sylvestr708008486 (4)ref|XP_006361762.1|1e-32PREDICTED: armadillo repeat-containing protein 8-like [Solanum tuberosum]
JMSF015A22Sequence461007822 (4)ref|XP_009790466.1|2e-18PREDICTED: armadillo repeat-containing protein 8 isoform X1 [Nicotiana sylvestr710008486 (4)ref|XP_006361762.1|9e-34PREDICTED: armadillo repeat-containing protein 8-like [Solanum tuberosum]
JMSF016E16Sequence516007822 (4)ref|XP_009790467.1|3e-33PREDICTED: armadillo repeat-containing protein 8 isoform X2 [Nicotiana sylvestr715008486 (4)ref|XP_006361762.1|9e-34PREDICTED: armadillo repeat-containing protein 8-like [Solanum tuberosum]

Alignment

This contig is upended


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JMFN016I24-                                                              TATGTCCTT
                      ____________________________________________________________
consensus                                                                TATGTCCTT
 
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JMFN016I24-           GGCAATGTAGCATCTGGAAATGAATTCCACAAGGAAGCAGTTATGCACCAGCTTTTCCCA
                      ____________________________________________________________
consensus             GGCAATGTAGCATCTGGAAATGAATTCCACAAGGAAGCAGTTATGCACCAGCTTTTCCCA
 
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JMFN016I24-           CCTTCGTCTAATGACACCCACTCAGTGGTCTTTAAGTTCTTGCAGAGTCATGACAGCCAA
rJMSF015A22+                          CCCACTCAGTGGTCTTTAAGTTCTTGCAGAGTCATGACAGCCAA
rJMSF013F23+                          CCCACTCAGTGGTCTTTAAGTTCTTGCAGAGTCATGACAGCCAA
rJMSF016E16+                          CCCACTCAGTGGTCTTTAAGTTCTTGCAGAGTCATGACAGCCAA
                      ____________________________________________________________
consensus             CCTTCGTCTAATGACACCCACTCAGTGGTCTTTAAGTTCTTGCAGAGTCATGACAGCCAA
 
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JMFN016I24-           TTACGCACTGCTGCTGTTTGGGCTTTAGTAAATCTAACTTTTCCAAGCGGTCCTGGAGCA
rJMSF015A22+          TTACGCACTGCTGCTGTTTGGGCTTTAGTAAATCTAACTTTTCCAAGCGGTCCTGGAGCA
rJMSF013F23+          TTACGCACTGCTGCTGTTTGGGCTTTAGTAAATCTAACTTTTCCAAGCGGTCCTGGAGCA
rJMSF016E16+          TTACGCACTGCTGCTGTTTGGGCTTTAGTAAATCTAACTTTTCCAAGCGGTCCTGGAGCA
                      ____________________________________________________________
consensus             TTACGCACTGCTGCTGTTTGGGCTTTAGTAAATCTAACTTTTCCAAGCGGTCCTGGAGCA
 
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JMFN016I24-           TTTCATCGGGCTGTGAAACTACGAAATTCAGGAGTTCTTTCCCAACTGAAGAACATGGTC
rJMSF015A22+          TTTCATCGGGCTGTGAAACTACGAAATTCAGGAGTTCTTTCCCAACTGAAGAACATGGTC
rJMSF013F23+          TTTCATCGGGCTGTGAAACTACGAAATTCAGGAGTTCTTTCCCAACTGAAGAACATGGTC
rJMSF016E16+          TTTCATCGGGCTGTGAAACTACGAAATTCAGGAGTTCTTTCCCAACTGAAGAACATGGTC
                      ____________________________________________________________
consensus             TTTCATCGGGCTGTGAAACTACGAAATTCAGGAGTTCTTTCCCAACTGAAGAACATGGTC
 
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JMFN016I24-           AATGATCCCTGCTTGGATGTGAAGCTTAGAGCAAGAACAGCTCTTGGGCAATCAGTGACT
rJMSF015A22+          AATGATCCCTGCTTGGATGTGAAGCTTAGAGCAAGAACAGCTCTTGGGCAATCAGTGACT
rJMSF013F23+          AATGATCCCTGCTTGGATGTGAAGCTTAGAGCAAGAACAGCTCTTGGGCAATCAGTGACT
rJMSF016E16+          AATGATCCCTGCTTGGATGTGAAGCTTAGAGCAAGAACAGCTCTTGGGCAATCAGTGACT
                      ____________________________________________________________
consensus             AATGATCCCTGCTTGGATGTGAAGCTTAGAGCAAGAACAGCTCTTGGGCAATCAGTGACT
 
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JMFN016I24-           TCTGGTGATGGCTCAGCATGAATATTATGTTTATATATGCTTAATCGAATGGCTAGCACA
rJMSF015A22+          TCTGGTGATGGCTCAGCATGAATATTATGTTTATATATGCTTAATCGAATGGCTAGCACA
rJMSF013F23+          TCTGGTGATGGCTCAGCATGAATATTATGTTTATATATGCTTAATCGAATGGCTAGCACA
rJMSF016E16+          TCTGGTGATGGCTCAGCATGAATATTATGTTTATATATGCTTAATCGAATGGCTAGCACA
                      ____________________________________________________________
consensus             TCTGGTGATGGCTCAGCATGAATATTATGTTTATATATGCTTAATCGAATGGCTAGCACA
 
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JMFN016I24-           ACAGTCCCAGTGGAGCATGATCGTTTGGGCTTCAACTTGTTTTAAAGTGCCATTTCTTTA
rJMSF015A22+          ACAGTCCCAGTGGAGCATGATCGTTTGGGCTTCAACTTGTTTTAAAGTGCCATTTCTTTA
rJMSF013F23+          ACAGTCCCAGTGGAGCATGATCGTTTGGGCTTCAACTTGTTTTAAAGTGCCATTTCTTTA
rJMSF016E16+          ACAGTCCCAGTGGAGCATGATCGTTTGGGCTTCAACTTGTTTTAAAGTGCCATTTCTTTA
                      ____________________________________________________________
consensus             ACAGTCCCAGTGGAGCATGATCGTTTGGGCTTCAACTTGTTTTAAAGTGCCATTTCTTTA
 
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JMFN016I24-           CCTGGACCTTTAAGATCATGGCTTAAGCATTTACTACAATATCTTTCTGTTCGAAGCTTC
rJMSF015A22+          CCTGGACCTTTAAGATCATGGCTTAAGCATTTACTACAATATCTTTCTGTTCGAAGCTTC
rJMSF013F23+          CCTGGACCTTTAAGATCATGGCTTAAGCATTTACTACAATATCTTTCTGTTCGAAGCTTC
rJMSF016E16+          CCTGGACCTTTAAGATCATGGCTTAAGCATTTACTACAATATCTTTCTGTTCGAAGCTTC
                      ____________________________________________________________
consensus             CCTGGACCTTTAAGATCATGGCTTAAGCATTTACTACAATATCTTTCTGTTCGAAGCTTC
 
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JMFN016I24-           ACGGGGGAGCATGCTTATGTTGTGTGTGATGTTTGCTGAGCAGGTCATCTTCAAGAGTTT
rJMSF015A22+          ACGGGGGAGCATGCTTATGTTGTGTGTGATGTTTGCTGAGCAGGTCATCTTCAAGAGTTT
rJMSF013F23+          ACGGGGGAGCATGCTTATGTTGTGTGTGATGTTTGCTGAGCAGGTCATCTTCAAGAGTTT
rJMSF016E16+          ACGGGGGAGCATGCTTATGTTGTGTGTGATGTTTGCTGAGCAGGTCATCTTCAAGAGTTT
                      ____________________________________________________________
consensus             ACGGGGGAGCATGCTTATGTTGTGTGTGATGTTTGCTGAGCAGGTCATCTTCAAGAGTTT
 
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JMFN016I24-           TGTTTCCATGACCTCTCCGACGGTTAGCGATTGTTGAGAACTATTGNTATTTCTATGTAT
rJMSF015A22+          TGTTTCCATGACCTCTCCGACGGTTAGCGATTGTTGAGAACTATTGTTATTTCTATGTAT
rJMSF013F23+          TGTTTCCATGACCTCTCCGACGGTTAGCGATTGTTGAGAACTATTGTTATTTCTATGTAT
rJMSF016E16+          TGTTTCCATGACCTCTCCGACGGTTAGCGATTGTTGAGAACTATTGTTATTTCTATGTAT
                      ____________________________________________________________
consensus             TGTTTCCATGACCTCTCCGACGGTTAGCGATTGTTGAGAACTATTGTTATTTCTATGTAT
 
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JMFN016I24-           GTATAATGTTTGC                                               
rJMSF015A22+          GTATAATGTTTGCAACAGGTGTAGTTTACCCCTTCCCCGTCATGACAACATGCTTCTCTC
rJMSF013F23+          GTATAATGTTTGCAACAGGTGTAGTTTACCCCTTCCCCGTCATGACAACATGCTTCTCTC
rJMSF016E16+          GTATAATGTTTGCAACAGGTGTAGTTTACCCCTTCCCCGTCATGACAACATGCTTCTCTC
                      ____________________________________________________________
consensus             GTATAATGTTTGCAACAGGTGTAGTTTACCCCTTCCCCGTCATGACAACATGCTTCTCTC
 
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rJMSF015A22+          TATGTTTTGGTTTTACATATTTCCGATTTTACCCCTGCTGAGTGAGTCCCTCATGGGGTA
rJMSF013F23+          TATGTTTTGGTTTTACATATTTCCGATTTTACCCCTGCTGAGTGAGTCCCTCATGGGGTA
rJMSF016E16+          TATGTTTTGGTTTTACATATTTCCGATTTTACCCCTGCTGAGTGAGTCCCTCATGGGGTA
                      ____________________________________________________________
consensus             TATGTTTTGGTTTTACATATTTCCGATTTTACCCCTGCTGAGTGAGTCCCTCATGGGGTA
 
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rJMSF015A22+          TGGGTGGGGAATCCTTATTCCTCACCCCACCAAGGTAC                      
rJMSF013F23+          TGGGTGGGGAATCCTTATTCCTCACCCCACCAAGGTAC                      
rJMSF016E16+          TGGGTGGGGAATCCTTATTCCTCACCCCACCAAGGTACAATGTATGTAAGTTTGATCTCG
                      ____________________________________________________________
consensus             TGGGTGGGGAATCCTTATTCCTCACCCCACCAAGGTACAATGTATGTAAGTTTGATCTCG