Contig 008482:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF015F03Sequence236003575 (3)771008482 (2)ref|XP_009612191.1|7e-37PREDICTED: APO protein 4, mitochondrial [Nicotiana tomentosiformis]
JMSF036F01Sequence677003575 (3)ref|XP_009612191.1|3e-64PREDICTED: APO protein 4, mitochondrial [Nicotiana tomentosiformis]723008482 (2)ref|XP_009612191.1|1e-57PREDICTED: APO protein 4, mitochondrial [Nicotiana tomentosiformis]

Alignment

This contig is upended


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rJMSF036F01+                AATGCATGGGAAACACTTAGATCTGGAGTGCATAAGCTGCTGTTGGGTTTATCC
                      ____________________________________________________________
consensus                   AATGCATGGGAAACACTTAGATCTGGAGTGCATAAGCTGCTGTTGGGTTTATCC
 
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rJMSF036F01+          AGTAAAGGTCTGCAAACACTGCTCAGAAGTTCATGTGGGACCTTCTGGGCATAAAGCTCG
                      ____________________________________________________________
consensus             AGTAAAGGTCTGCAAACACTGCTCAGAAGTTCATGTGGGACCTTCTGGGCATAAAGCTCG
 
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rJMSF036F01+          GCTTTGTGGGGTATTTAAGTATGAAAGTTGGCGTCGAATTCACTTCTGGGAGAAGGCAAG
rJMSF015F03+                   GGTATTTAAGTATGAAAGTNGGCGTCGAATTCACTTCTGGGAGAAGGCAAG
                      ____________________________________________________________
consensus             GCTTTGTGGGGTATTTAAGTATGAAAGTTGGCGTCGAATTCACTTCTGGGAGAAGGCAAG
 
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rJMSF036F01+          CGTGGATGATTTGGTTCCTCCAAATATAGTTTGGCACAGGAGACCTCAAGATCCTCCATT
rJMSF015F03+          CGTGGATGATTTGGTTCCTCCAAATATAGTTTGGCACAGGAGACCTCAAGATCCTCCATT
                      ____________________________________________________________
consensus             CGTGGATGATTTGGTTCCTCCAAATATAGTTTGGCACAGGAGACCTCAAGATCCTCCATT
 
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rJMSF036F01+          GCTACTCGATGAAGGCCGGAACTACTATGGGCACGCTCCAGCTGTTGTTGATCTGTGCAC
rJMSF015F03+          GCTACTCGATGAAGGCCGGAACTACTATGGGCACGCTCCAGCTGTTGTTGATCTGTGCAC
                      ____________________________________________________________
consensus             GCTACTCGATGAAGGCCGGAACTACTATGGGCACGCTCCAGCTGTTGTTGATCTGTGCAC
 
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rJMSF036F01+          CAAGGCTGGTGCAATTGCACCATCCAAATATTTTTGCATGATGAAAGTTGATGGTTTATC
rJMSF015F03+          CAAGGCTGGTGCAATTGCACCATCCAAATATTTTTGCATGATGAAAGTTGATGGTTTATC
                      ____________________________________________________________
consensus             CAAGGCTGGTGCAATTGCACCATCCAAATATTTTTGCATGATGAAAGTTGATGGTTTATC
 
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rJMSF036F01+          AGCCCCTATTTCGGACAAACCTTAATGCCATATTGCCATCATCATTTACTGGAGTCATGT
rJMSF015F03+          AGCCCCTATTTCGGACAAACCTTAATGCCATATTGCCATCATCATTTACTGGAGTCATGT
                      ____________________________________________________________
consensus             AGCCCCTATTTCGGACAAACCTTAATGCCATATTGCCATCATCATTTACTGGAGTCATGT
 
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rJMSF036F01+          GGCGAGTTGGTTCGAAATGTGCTAAAGATCATATGTATGGCCTTCAGATTATCCTGCAAC
rJMSF015F03+          GGCGAGTTGGTTCGAAATGTGCTAAAGATCATATGTATGGCCTTCAGATTATCCTGCAAC
                      ____________________________________________________________
consensus             GGCGAGTTGGTTCGAAATGTGCTAAAGATCATATGTATGGCCTTCAGATTATCCTGCAAC
 
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rJMSF036F01+          ACAA                                                        
rJMSF015F03+          ACAAGTAAGCAACCAAATACAATTTTTTATATCCTGAATAGAAGTATTCATAACTGATTT
                      ____________________________________________________________
consensus             ACAAGTAAGCAACCAAATACAATTTTTTATATCCTGAATAGAAGTATTCATAACTGATTT
 
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rJMSF015F03+          CTCTTGTTCAAGGTCAATTCATTTATATGTCAATGGTGAACTGTTAATTGCATGTAATTT
                      ____________________________________________________________
consensus             CTCTTGTTCAAGGTCAATTCATTTATATGTCAATGGTGAACTGTTAATTGCATGTAATTT
 
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rJMSF015F03+          ACTTGTGTGGTAGGGTCACTACCAATATAATTAGCATGAAGAACTACACATTATACACAC
                      ____________________________________________________________
consensus             ACTTGTGTGGTAGGGTCACTACCAATATAATTAGCATGAAGAACTACACATTATACACAC
 
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rJMSF015F03+          GCACAATGTAATTTACTTGTGTGCTTTAATGGCTGTTGATGATATTCAAGATGGCAAGGG
                      ____________________________________________________________
consensus             GCACAATGTAATTTACTTGTGTGCTTTAATGGCTGTTGATGATATTCAAGATGGCAAGGG
 
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rJMSF015F03+          ATTGGTTTCTGGGAAGCTTCTATTGTCCTCCTCCGGGCTTCTCTCGGCTCTCATCAGTAC
                      ____________________________________________________________
consensus             ATTGGTTTCTGGGAAGCTTCTATTGTCCTCCTCCGGGCTTCTCTCGGCTCTCATCAGTAC
 
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rJMSF015F03+          TCACAAGAATTGGGTTCCTGCTGATAAATTCTACTTTTAGGTACGAGTTTTGCTTTCTTT
                      ____________________________________________________________
consensus             TCACAAGAATTGGGTTCCTGCTGATAAATTCTACTTTTAGGTACGAGTTTTGCTTTCTTT
 
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rJMSF015F03+          CTGAAATGTCTCTAGGGTTTTAGGAACAATTATAGATATTGCAATTTATTTGTGAAATGT
                      ____________________________________________________________
consensus             CTGAAATGTCTCTAGGGTTTTAGGAACAATTATAGATATTGCAATTTATTTGTGAAATGT