Contig 008481:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF014C18Sequence484002242 (13)ref|XP_009795509.1|7e-57PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g07650790008481 (7)ref|XP_009600347.1|1e-58PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g07650
JMSF015D15Sequence500002242 (13)ref|XP_009795509.1|2e-52PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g07650792008481 (7)ref|XP_009600347.1|6e-39PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g07650
JMSF024I12Sequence699002242 (13)ref|XP_011102070.1|2e-88PREDICTED: probable leucine-rich repeat receptor-like serine/threonine-protein 755008481 (7)ref|XP_009600347.1|2e-58PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g07650
JMSF032M17Sequence707017872ref|XP_010316866.1|6e-86PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g07650683008481 (7)ref|XP_009600347.1|2e-34PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g07650
JMSF033M08Sequence672007958 (2)ref|XP_011102070.1|9e-61PREDICTED: probable leucine-rich repeat receptor-like serine/threonine-protein 637008481 (7)ref|XP_009600347.1|8e-28PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g07650
JMSF037O03Sequence672007958 (2)ref|XP_011102070.1|2e-65PREDICTED: probable leucine-rich repeat receptor-like serine/threonine-protein 711008481 (7)ref|XP_009600347.1|2e-57PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g07650
JMSF038F10Sequence679002242 (13)ref|XP_011102070.1|3e-82PREDICTED: probable leucine-rich repeat receptor-like serine/threonine-protein 910008481 (7)ref|XP_006358075.1|9e-76PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g07650

Alignment

This contig is upended


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rJMSF038F10+                               TNTGCATGAAGAATCGGAAAATAAAAATTGGTTCATAGA
                      ____________________________________________________________
consensus                                  TNTGCATGAAGAATCGGAAAATAAAAATTGGTTCATAGA
 
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rJMSF038F10+          GATATTAAACCCACCAATGTACTTCTTGACAGAGAACTCAATCCAAAAATTTCTGACTTT
                      ____________________________________________________________
consensus             GATATTAAACCCACCAATGTACTTCTTGACAGAGAACTCAATCCAAAAATTTCTGACTTT
 
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rJMSF014C18+                                                TATTAGTACAAGAGTTGCTGGG
rJMSF024I12+                                                TATTAGTACAAGAGTTGCTGGG
rJMSF037O03+                                         CACATNTTATTAGTACAAGAGTTGCTGGG
rJMSF038F10+          GGTCTTGCTAAACTTGACGATGATGACAAGACACATATTATTAGTACAAGAGTTGCTGGG
                      ____________________________________________________________
consensus             GGTCTTGCTAAACTTGACGATGATGACAAGACACATATTATTAGTACAAGAGTTGCTGGG
 
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rJMSF014C18+          ACAAGAGGATACATGGCTCCTGAATATGTATTGTGGGGCTACTTAACATTCAAAGTTGAT
rJMSF024I12+          ACAAGAGGATACATGGCTCCTGAATATGTATTGTGGGGCTACTTAACATTCAAAGTTGAT
rJMSF037O03+          ACAAGAGGATACATGGCTCCTGAATATGTATTGTGGGGCTACTTAACATTCAAAGTTGAT
rJMSF038F10+          ACAAGAGGATACATGGCTCCTGAATATGTATTGTGGGGCTACTTAACATTCAAAGTTGAT
rJMSF015D15+                                                          TTCAAAGGTGAN
                      ____________________________________________________________
consensus             ACAAGAGGATACATGGCTCCTGAATATGTATTGTGGGGCTACTTAACATTCAAAGTTGAT
 
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rJMSF014C18+          GTCTATAGTTTTGGAGTGGTGACATTGGAAATTGTTGCCGGGAAGAATGTGGAGTATCGT
rJMSF024I12+          GTCTATAGTTTTGGAGTGGTGACATTGGAAATTGTTGCCGGGAAGAATGTGGAGTATCGT
rJMSF037O03+          GTCTATAGTTTTGGAGTGGTGACATTGGAAATTGTTGCCGGGAAGAATGTGGAGTATCGT
rJMSF038F10+          GTCTATAGTTTTGGAGTGGTGACATTGGAAATTGTTGCCGGGAAGAATGTGGAGTATCGT
rJMSF032M17+                                                    AAGAATGTGGAGTATCGT
rJMSF015D15+          GTCTATAGTTTGGGAGTGGTGACATGGGAAATTGTTGCCGGGAAGAATGTGGAGTATCGT
                      ____________________________________________________________
consensus             GTCTATAGTTTTGGAGTGGTGACATTGGAAATTGTTGCCGGGAAGAATGTGGAGTATCGT
 
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rJMSF014C18+          CGTGATGAGAATTGTCTTTGCCTCCTTGATTGGGTACTTGATCTTCAAAAACAAGGAAAC
rJMSF024I12+          CGTGATGAGAATTGTCTTTGCCTCCTTGATTGGGTACTTGATCTTCAAAAACAAGGAAAC
rJMSF037O03+          CGTGATGAGAATTGTCTTTGCCTCCTTGATTGGGTACTTGATCTTCAAAAACAAGGAAAC
rJMSF038F10+          CGTGATGAGAATTGTCTTTGCCTCCTTGATTGGGTACTTGATCTTCAAAAACAAGGAAAC
rJMSF033M08+                                      ATTGGGTACTTGATCTTCAAAAACAAGGAAAC
rJMSF032M17+          CGTGATGAGAATTGTCTTTGCCTCCTTGATTGGGTACTTGATCTTCAAAAACAAGGAAAC
rJMSF015D15+          CGTGATGAGAATTGTCTTTGCCTCCTTGATTGGGTACTTGATCTTCAAAAACAAGGAAAC
                      ____________________________________________________________
consensus             CGTGATGAGAATTGTCTTTGCCTCCTTGATTGGGTACTTGATCTTCAAAAACAAGGAAAC
 
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rJMSF014C18+          CTAATAGAGCTAATAGATCCAAGATTGGGTTCTAATTTCGACAAAGAACAAGCACTCAGG
rJMSF024I12+          CTAATAGAGCTAATAGATCCAAGATTGGGTTCTAATTTCGACAAAGAACAAGCACTCAGG
rJMSF037O03+          CTAATAGAGCTAATAGATCCAAGATTGGGTTCTAATTTCGACAGAGAACAAGCACTCAGG
rJMSF038F10+          CTAATAGAGCTAATAGATCCAAGATTGGGTTCTAATTTCGACAAAGAACAAGCACTCAGG
rJMSF033M08+          CTAATAGAGCTAATAGATCCAAGATTGGGTTCTAATTTCGACAAAGAACAAGCACTCAGG
rJMSF032M17+          CTAATAGAGCTAATAGATCCAAGATTGGGTTCTAATTTCGACAAAGAACAAGCACTTAGG
rJMSF015D15+          CTAATAGAGCTAATAGATCCAAGATTGGGTTCTAATTTCGACAAAGAACAAGCACTCAGG
                      ____________________________________________________________
consensus             CTAATAGAGCTAATAGATCCAAGATTGGGTTCTAATTTCGACAAAGAACAAGCACTCAGG
 
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rJMSF014C18+          GTGATTAAAGTAGCTTTACTTTGTACTAATCCCTCTCCAGCTCTTAGGCCATCCATGTCT
rJMSF024I12+          GTGATTAAAGTAGCTTTACTTTGTACTAATCCCTCTCCAGCTCTTAGGCCATCCATGTCT
rJMSF037O03+          GTGATTAAAGTAGCTTTACTTTGTACTAATCCCTCTCCAGCTCTTAGGCCATCCATGTCT
rJMSF038F10+          GTGATTAAAGTAGCTTTACTTTGTACTAATCCCTCTCCAGCTCTTAGGCCATCCATGTCT
rJMSF033M08+          GTGATTAAAGTAGCTTTACTTTGTACTAATCCCTCTCCAGCTCTTAGGCCATCCATGTCT
rJMSF032M17+          GTGATTAAAGTAGCTTTACTTTGTACTAATCCCTCTCCAGCTCTTAGGCCATCCATGTCT
rJMSF015D15+          GTGATTAAAGTAGCTTTACTTTGTACTAATCCCTCTCCAGCTCTTAGGCCATCCATGTCT
                      ____________________________________________________________
consensus             GTGATTAAAGTAGCTTTACTTTGTACTAATCCCTCTCCAGCTCTTAGGCCATCCATGTCT
 
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rJMSF014C18+          CTAGTAATCAACATGCTTGAAGGTCATGAAGATATTATTGAGTACGATACCGATCTACAC
rJMSF024I12+          CTAGTAATCAACATGCTTGAAGGTCATGAAGATATTATTGAGTACGATACCGATCTACAC
rJMSF037O03+          CTAGTAATCAACATGCTTGAAGGTCATGAAGATATTATTGAGTACGATACCGATCTACAC
rJMSF038F10+          CTAGTAATCAACATGCTTGAAGGTCATGAAGATATTATTGAGTACGATACCGATCTACAC
rJMSF033M08+          CTAGTAATCAACATGCTTGAAGGTCATGAAGATATTATTGAGTACGATACCGATCTACAC
rJMSF032M17+          CTAGTAATCAACATGCTTGAAGGTCATGAAGATATTATTGAGTACGATACCGATCTACAC
rJMSF015D15+          CTAGTAATCAACATGCTTGAAGGTCATGAAGATATTATTGAGTACGATACCGATCTACAC
                      ____________________________________________________________
consensus             CTAGTAATCAACATGCTTGAAGGTCATGAAGATATTATTGAGTACGATACCGATCTACAC
 
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rJMSF014C18+          GAATTCAACTTTCAAGCAATGAGAGATCATTATGATCAAATGCCAGTCCACTTAAGTGAT
rJMSF024I12+          GAATTCAACTTTCAAGCAATGAGAGATCATTATGATCAAATGCCAGTCCACTTAAGTGAT
rJMSF037O03+          GAATTCAACTTTCAAGCAATGAGAGATCATTATGATCAAATGCCAGTCCACTTAAGTGAT
rJMSF038F10+          GAATTCAACTTTCAAGCAATGAGAGATCATTATGATCAAATGCCAGTCCACTTAAGTGAT
rJMSF033M08+          GAATTCAACTTTCAAGCAATGAGAGATCATTATGATCAAATGCCAGTCCACTTAAGTGAT
rJMSF032M17+          GAATTCAACTTTCAAGCAATGAGAGATCATTATGATCAAATGCCAGTCCACTTAAGTGAT
rJMSF015D15+          GAATTCAACTTTCAAGCAATGAGAGATCATTATGATCAAATGCCAGTCCACTTAAGTGAT
                      ____________________________________________________________
consensus             GAATTCAACTTTCAAGCAATGAGAGATCATTATGATCAAATGCCAGTCCACTTAAGTGAT
 
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rJMSF014C18+          TCTCCATACCAAGCAAACTTTTCTTCCGATGCAAATTAACAATGAAAAATTGCATCTTTC
rJMSF024I12+          TCTCCATACCAAGCAAACTTTTCTTCCGATGCAAATTAACAATGAAAAATTGCATCTTTC
rJMSF037O03+          TCTCCATACCAAGCAAACTTTTCTTCCGATGCAAATTAACAATGAAAAATTGCATCTTTC
rJMSF038F10+          TCTCCATACCAAGCAAACTTTTCTTCCGATGCAAATTAACAATGAAAAATTGCATCTTTC
rJMSF033M08+          TCTCCATACCAAGCAAACTTTTCTTCCGATGCAAATTAACAATGAAAAATTGCATCTTTC
rJMSF032M17+          TCTCCATACCAAGCAAACTTTTCTTCCGATGCAAATTAACAATGAAAAATTGCATCTTTC
rJMSF015D15+          TCTCCATACCAAGCAAACTTTTCTTCCGATGCAAATTAACAATGAAAAATTGCATCTTTC
                      ____________________________________________________________
consensus             TCTCCATACCAAGCAAACTTTTCTTCCGATGCAAATTAACAATGAAAAATTGCATCTTTC
 
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rJMSF014C18+          ACTAATATAGTACAAGAAATTCGACTTGTAAGTCTGATCCTCACAGATAGCTCAAGTTGT
rJMSF024I12+          ACTAATATAGTACAAGAAATTCGACTTGTAAGTCTGATCCTCACAGATAGCTCAAGTTGT
rJMSF037O03+          ACTAATATAGTACAAGAAATTCGACTTGTAAGTCTGATCCTCACAGATAGCTCAAGTTGT
rJMSF038F10+          ACTAATATAGTACAAGAAATTCGACTTGTAAGTCTGATCCTCACAGATAGCTCAAGTTGT
rJMSF033M08+          ACTAATATAGTACAAGAAATTCGACTTGTAAGTCTGATCCTCACAGATAGCTCAAGTTGT
rJMSF032M17+          ACTAATATAGTACAAGAAATTCGACTTGTAAGTCTGATCCTCACAGATAGCTCAAGTTGT
rJMSF015D15+          ACTAATATAGTACAAGAAATTCGACTTGTAAGTCTGATCCTCACAGATAGCTCAAGTTGT
                      ____________________________________________________________
consensus             ACTAATATAGTACAAGAAATTCGACTTGTAAGTCTGATCCTCACAGATAGCTCAAGTTGT
 
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rJMSF014C18+          AGATTATGGAAAAGAACACATGATCAAACCCTTGCAACCATAATATGGTGGGGTCATTAG
rJMSF024I12+          AGATTATGGAAAAGAACACATGATCAAACCCTTGCAACCATAATATGGTGGGGTCATTAG
rJMSF037O03+          AGATTATGGAAAAGAACACATGATCAAACCCTTGCAACCATAATATGGTGGGGTCATTAG
rJMSF038F10+          AGATTATGGAAAAGAACACATGATCAAACCCTTGCAACCATAATATGGTGGGGTCATTAG
rJMSF033M08+          AGATTATGGAAAAGAACACATGATCAAACCCTTGCAACCATAATATGGTGGGGTCATTAG
rJMSF032M17+          AGATTATGGAAAAGAACACATGATCAAACCCTTGCAACCATAATATGGTGGGGTCATTAG
rJMSF015D15+          AGATTATGGAAAAGAACACATGATCAAACCCTTGCAACCATAATATGGTGGGGTCATTAG
                      ____________________________________________________________
consensus             AGATTATGGAAAAGAACACATGATCAAACCCTTGCAACCATAATATGGTGGGGTCATTAG
 
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rJMSF014C18+          GCACATGTTTTACTTCTCACCTAAAAGTTCATTGAGTCATCGTGATTTACTCATTCACTA
rJMSF024I12+          GCACATGTTTTACTTCTCACCTAAAAGTTCATTGAGTCATCGTGATTTACTCATTCACTA
rJMSF037O03+          GCACATGTTTTACTTCTCACCTAAAAGTTCATTGAGTCATCGTGATTTACTCATTCACTA
rJMSF038F10+          GCACATGTTTTACTTCTCACCTAAAAGTTCATTGAGTCATCGTGATTTACTCATTCACTA
rJMSF033M08+          GCACATGTTTTACTTCTCACCTAAAAGTTCATTGAGTCATCGTGATTTACTCATTCACTA
rJMSF032M17+          GCACATGTTTTACTTCTCACCTAAAAGTTCATTGAGTCATCGTGATTTACTCATTCACTA
rJMSF015D15+          GCACATGTTTTACTTCTCACCTAAAAGTTCATTGAGTCATCGTGATTTACTCATTCACTA
                      ____________________________________________________________
consensus             GCACATGTTTTACTTCTCACCTAAAAGTTCATTGAGTCATCGTGATTTACTCATTCACTA
 
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rJMSF014C18+          TCTTAACGAACCAGGGTGTGGAAACCCTAGTAATGAGAGAATTTTAATTTTCCTTTAGCA
rJMSF024I12+          TCTTAACGAACC                                                
rJMSF037O03+          TCT                                                         
rJMSF038F10+          TCTTAACGAACCAGGGTGTGGAAACCCTAGTAATGAGAGAATTTTAATTTTCCTTTAGCA
rJMSF033M08+          TCTTAACGAACCAGGGTGTGGAAACCCTAGTAATGAGAGAATTTTAATTTTCCTTTAGCA
rJMSF032M17+          TCTTAACGAACCAGGGTGTGGAAACCCTAGTAATGAGAGAATTTTAATTTTCCTTTAGCA
rJMSF015D15+          TCTTAACGAACCAGGGTGTGGAGACCCTAGTAATGAGAGAATTTTAATTTTCCTTTAGCA
                      ____________________________________________________________
consensus             TCTTAACGAACCAGGGTGTGGAAACCCTAGTAATGAGAGAATTTTAATTTTCCTTTAGCA
 
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rJMSF014C18+          AATGTACATATTGT                                              
rJMSF038F10+          AATGTACATATTGTTGTCTTTATATTT                                 
rJMSF033M08+          AATGTACATATTGTTGTCTTTATATTTTGAAGATATATTTTCAGTAACTATAAATTCCAA
rJMSF032M17+          AATGTACATATTGTTGTCTTTATATTTTGAAGATATATTTTCAGTAACTATAAATTCCAA
rJMSF015D15+          AATGTACATATTGTTGTCTTTATATTTTGAAGATATATTTTCAGTAACTATAAATTCCAA
                      ____________________________________________________________
consensus             AATGTACATATTGTTGTCTTTATATTTTGAAGATATATTTTCAGTAACTATAAATTCCAA
 
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rJMSF033M08+          TTTTG                                                       
rJMSF032M17+          TTTTG                                                       
rJMSF015D15+          TTTTGTGGATTATTATATTAGTATTAATATTATTATGTGTTTCATGCACAAAATGTGACT
                      ____________________________________________________________
consensus             TTTTGTGGATTATTATATTAGTATTAATATTATTATGTGTTTCATGCACAAAATGTGACT