| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF014O13 | Sequence | 467 | 007945 (5) | ref|XP_006347109.1| | 5e-65 | PREDICTED: pre-mRNA-processing factor 17-like isoform X2 [Solanum tuberosum] | 728 | 008479 (3) | gb|EYU31266.1| | 3e-28 | hypothetical protein MIMGU_mgv1a003313mg [Erythranthe guttata] |
| JMSF032E17 | Sequence | 621 | 007945 (5) | ref|XP_006347109.1| | 2e-75 | PREDICTED: pre-mRNA-processing factor 17-like isoform X2 [Solanum tuberosum] | 763 | 008479 (3) | ref|XP_002892579.1| | 1e-69 | predicted protein [Arabidopsis lyrata subsp. lyrata] gb|EFH68838.1| predicted pr |
| JMSF043G08 | Sequence | 693 | 007945 (5) | ref|XP_006347109.1| | 1e-75 | PREDICTED: pre-mRNA-processing factor 17-like isoform X2 [Solanum tuberosum] | 830 | 008479 (3) | gb|EYU31266.1| | 1e-48 | hypothetical protein MIMGU_mgv1a003313mg [Erythranthe guttata] |
This contig is upended
. : . : . : . : . : . :
rJMSF032E17+ CCAAATGGGAACTGGCTTGCGGCCCAGAGTTTGGATAATCAAATCCTTATCTAT
rJMSF043G08+ TGCGGCCCAGAGTTGGGATAATCAAATCCTTATCTAT
____________________________________________________________
consensus CCAAATGGGAACTGGCTTGCGGCCCAGAGTTTGGATAATCAAATCCTTATCTAT
. : . : . : . : . : . :
rJMSF032E17+ AGTACCAGGGAGAGGTTCCAGCTGAACAAGAAGAAGAGATTTGCTGGACATATTGTAGCT
rJMSF043G08+ AGTACCAGGGAGAGGTTCCAGCTGAACCAGAAGAAGTGATTTGCTGGACATATTGTAGCT
____________________________________________________________
consensus AGTACCAGGGAGAGGTTCCAGCTGAACCAGAAGAAGTGATTTGCTGGACATATTGTAGCT
. : . : . : . : . : . :
rJMSF032E17+ GGGTATGCCTGTCAGGTTAATTTCTCACCTGATGGGCGG-TTTGTCATGTCAGGAGATGG
rJMSF043G08+ GGGTATGCCTGTCAGGTTAATTTCTCACCTGATGGGCGGTTTTGTCATGTCAGGAGATGG
rJMSF014O13+ GGAGATGG
____________________________________________________________
consensus GGGTATGCCTGTCAGGTTAATTTCTCACCTGATGGGCGGTTTTGTCATGTCAGGAGATGG
. : . : . : . : . : . :
rJMSF032E17+ TGAAGGTAGATGCTGGTTTTGGGATTGGAAGAGTTGCAAAGTCTTTAGAACTCTTAAGTG
rJMSF043G08+ TGAAGGTAGATGCTGGTTTTGGGATTGGAAGAGTTGCAAAGTCTTTAGAACTCTTAAGTG
rJMSF014O13+ TGAAGGTAGATGCTGGTTTTGGGATTGGAAGAGTTGCAAAGTCTTTAGAACTCTTAAGTG
____________________________________________________________
consensus TGAAGGTAGATGCTGGTTTTGGGATTGGAAGAGTTGCAAAGTCTTTAGAACTCTTAAGTG
. : . : . : . : . : . :
rJMSF032E17+ TCATGATGGGGTATGCATTGGTGCTGCGTGGCATCCTTTGGAGCAAAGTAAAGTTGCTAC
rJMSF043G08+ TCATGATGGGGTATGCATTGGTGCTGCGTGGCATCCTTTGGAGCAAAGTAAAGTTGCTAC
rJMSF014O13+ TCATGATGGGGTATGCATTGGTGCTGCGTGGCATCCTTTGGAGCAAAGTAAAGTTGCTAC
____________________________________________________________
consensus TCATGATGGGGTATGCATTGGTGCTGCGTGGCATCCTTTGGAGCAAAGTAAAGTTGCTAC
. : . : . : . : . : . :
rJMSF032E17+ CTGTGGCTGGGATGGCTTGATCAAATACTGGGACTAAACAATGGGATGCGAAGCTTGTCG
rJMSF043G08+ CTGTGGCTGGGATGGCTTGATCAAATACTGGGACTAAACAATGGGATGCGAAGCTTGTCG
rJMSF014O13+ CTGTGGCTGGGATGGCTTGATCAAATACTGGGACTAAACAATGGGATGCGAAGCTTGTCG
____________________________________________________________
consensus CTGTGGCTGGGATGGCTTGATCAAATACTGGGACTAAACAATGGGATGCGAAGCTTGTCG
. : . : . : . : . : . :
rJMSF032E17+ TTTGTTTTTATTAATCATCTCATTCACGGAAGAGCTTCATTAATCGATAAGTTCAGTTGG
rJMSF043G08+ TTTGTTTTTATTAATCATCTCATTCACGGAAGAGCTTCATTAATCGATAAGTTCAGTTGG
rJMSF014O13+ TTTGTTTTTATTAATCATCTCATTCNCGGAAGAGCTTCATTAATCGATAAGTTCAGTTGG
____________________________________________________________
consensus TTTGTTTTTATTAATCATCTCATTCACGGAAGAGCTTCATTAATCGATAAGTTCAGTTGG
. : . : . : . : . : . :
rJMSF032E17+ AATTTGTCAGTGTATTTTCAAATCTCATTTGGAGTAAGATATATCAGAAATCTGTATGAG
rJMSF043G08+ AATTTGTCAGTGTATTTTCAAATCTCATTTGGAGTAAGATATATCAGAAATCTGTATGAG
rJMSF014O13+ AATTTGTCAGNGTATTTTCAAATCTCATTTGGNGTAAGATATATCAGAAATCTGTATGAG
____________________________________________________________
consensus AATTTGTCAGTGTATTTTCAAATCTCATTTGGAGTAAGATATATCAGAAATCTGTATGAG
. : . : . : . : . : . :
rJMSF032E17+ CTCGAATGCTTCCTCGCAATTTACAGGTTCAAACACCTTCCATATGTGTGCATGCTAGAA
rJMSF043G08+ CTCGAATGCTTCCTCGCAATTTACAGGTTCAAACACCTTCCATATGTGTGCATGCTAGAA
rJMSF014O13+ CTCGAATGCTTCCTCGCAATTTACAGGTTCAAACNCCTTCCATATGTGTGCNTGCTAGAA
____________________________________________________________
consensus CTCGAATGCTTCCTCGCAATTTACAGGTTCAAACACCTTCCATATGTGTGCATGCTAGAA
. : . : . : . : . : . :
rJMSF032E17+ GAAAAACATCAATCCTAACTTGGTGCCCTTGCTTGCATCCCCTTCTATCTCTACTTGATG
rJMSF043G08+ GAAAAACATCAATCCTAACTTGGTGCCCTTGCTTGCATCCCCTTCTATCTCTACTTGATG
rJMSF014O13+ GAAAAACATCAATCCTAACTTGGNGCCCTTGCTTGCATCCCCTTCTATCTCTACTTGATG
____________________________________________________________
consensus GAAAAACATCAATCCTAACTTGGTGCCCTTGCTTGCATCCCCTTCTATCTCTACTTGATG
. : . : . : . : . : . :
rJMSF032E17+ ATGATCAATTTTGCGCCATACAGAATTGTCTGATAGGCTGTCCAGGAAGTTGTTGAGTTG
rJMSF043G08+ ATGATCAATTTTGCGCCATACAGAATTGTCTGATAGGCTGTCCAGGAAGTTGTTGAGTTG
rJMSF014O13+ ATGATCAATTTTGCGCCATACAGAATTGTNTGATAGGCTGTCCNGGAAGTTGTTGAGTTG
____________________________________________________________
consensus ATGATCAATTTTGCGCCATACAGAATTGTCTGATAGGCTGTCCAGGAAGTTGTTGAGTTG
. : . : . : . : . : . :
rJMSF032E17+ TATTATATTGCACTCTTTCCTGTATTATTGGCACTGGTCTGTTTTAATGAGTTGTAGGCT
rJMSF043G08+ TATTATATTGCACTCTTTCCTGTATTATTGGCACTGGTCTGTTTTAATGAGTTGTAGGCT
rJMSF014O13+ TATTATATTGCNCTCTTTCCTGTATTATTGGCNCTGGTCTGTTTTAATGAGTTGTAGGCT
____________________________________________________________
consensus TATTATATTGCACTCTTTCCTGTATTATTGGCACTGGTCTGTTTTAATGAGTTGTAGGCT
. : . : . : . : . : . :
rJMSF032E17+ AAAATAGGATAGAACAAAGTGCAAAATTCACTTTGATCGACTGTAATT
rJMSF043G08+ AAAATAGGATAGAACAAAGTGCAAAATTCACTTTGATCGACTGTAATTTGTTATAGCAAT
rJMSF014O13+ AAAATAGGATAGAACAAAGTGCAAAATTCNCTTTGATCGACTGTAATTTGTTATAGCAAT
____________________________________________________________
consensus AAAATAGGATAGAACAAAGTGCAAAATTCACTTTGATCGACTGTAATTTGTTATAGCAAT
. : . : . : . : . : . :
rJMSF043G08+ TTTTATTTGACTAGCGGATTCCCCTACATTTTGCCCATCTTGTATTTGGCGTGTGTTGGA
rJMSF014O13+ TTTTATTTGACTAGCGGATTCCCCTACNTTTTGCCCNTCTTGTATTTGGCGTGTGTTGGA
____________________________________________________________
consensus TTTTATTTGACTAGCGGATTCCCCTACATTTTGCCCATCTTGTATTTGGCGTGTGTTGGA
. : . : . : . : . : . :
rJMSF043G08+ TTTGTAAGAAT
rJMSF014O13+ TTTGTAAGAATCTACNGAAGTGAGTGTAGTAATGAGAGTATGTGTGTAGAAAGATAGTTT
____________________________________________________________
consensus TTTGTAAGAATCTACNGAAGTGAGTGTAGTAATGAGAGTATGTGTGTAGAAAGATAGTTT