Contig 008478:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF014K07Sequence457008478 (2)ref|XP_009801493.1|120PREDICTED: uncharacterized protein LOC104247231 [Nicotiana sylvestris]732008478 (2)ref|XP_009801493.1|102PREDICTED: uncharacterized protein LOC104247231 [Nicotiana sylvestris]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF014K07-                GGTTAACATTTTCTCGTCTAGCTCTCTGTAAGGCCAGAGAGAAGCGACGTCGTTT
                      ____________________________________________________________
consensus                  GGTTAACATTTTCTCGTCTAGCTCTCTGTAAGGCCAGAGAGAAGCGACGTCGTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF014K07-           TCAGTCATGATCGAATACGTATCAAGCTGGTTCACTCCCACTGTTCTCTTCTGCGTTCTG
                      ____________________________________________________________
consensus             TCAGTCATGATCGAATACGTATCAAGCTGGTTCACTCCCACTGTTCTCTTCTGCGTTCTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF014K07-           AACCTCGTCATAGGAACCATACTCTTATCTTCCACCTTAAAGCCTCAGAAGAAGCAGCAG
                      ____________________________________________________________
consensus             AACCTCGTCATAGGAACCATACTCTTATCTTCCACCTTAAAGCCTCAGAAGAAGCAGCAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF014K07-           CACCAACTCGGTGACGACAACTCAGTGCCACAACTCGCCCCAGTCCCCTCTCTATTCCAA
                      ____________________________________________________________
consensus             CACCAACTCGGTGACGACAACTCAGTGCCACAACTCGCCCCAGTCCCCTCTCTATTCCAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF014K07-           CGAGTCAGGTCCTTCAACTACTCGCTCCAGCAAGAGCACCACACGCCCTCACTCTACCGT
                      ____________________________________________________________
consensus             CGAGTCAGGTCCTTCAACTACTCGCTCCAGCAAGAGCACCACACGCCCTCACTCTACCGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF014K07-           GCACCTTCTCTGCTCCAACGCCTCGGTGCCGTCAACTTCTCGTTCTCTCGCTCGGACGAT
rJMSF014K07+                                                          CGCTCGGACGAT
                      ____________________________________________________________
consensus             GCACCTTCTCTGCTCCAACGCCTCGGTGCCGTCAACTTCTCGTTCTCTCGCTCGGACGAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF014K07-           TTTCCGGCGAGTACCCACCACGCAGATCCACCGGAAGACGACACCCAGACAACCCGAGCA
rJMSF014K07+          TTTCCGGCGAGTACCCACCACGCAGATCCACCGGAAGACGACACCCAGACAACCCGAGCA
                      ____________________________________________________________
consensus             TTTCCGGCGAGTACCCACCACGCAGATCCACCGGAAGACGACACCCAGACAACCCGAGCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF014K07-           CCGTCTCTTCTGGAACGTGTCAGGTCCATTAACTTGTCGTTT                  
rJMSF014K07+          CCGTCTCTTCTGGAACGTGTCAGGTCCATTAACTTGTCGTTTTCCCGGTCCCGACAACCC
                      ____________________________________________________________
consensus             CCGTCTCTTCTGGAACGTGTCAGGTCCATTAACTTGTCGTTTTCCCGGTCCCGACAACCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF014K07+          GACCCGTCCCCGTCTACGACCCATCTCGCGGAATCACCGGAAGCGCAGACCCAGAAGGTT
                      ____________________________________________________________
consensus             GACCCGTCCCCGTCTACGACCCATCTCGCGGAATCACCGGAAGCGCAGACCCAGAAGGTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF014K07+          GAGGTAGAGAGAGATTCGGAGACCGTGATGAGTCACGACAGGAGAACCAAGTCAGCCACG
                      ____________________________________________________________
consensus             GAGGTAGAGAGAGATTCGGAGACCGTGATGAGTCACGACAGGAGAACCAAGTCAGCCACG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF014K07+          TGCGCCGAGATTCCGGCGAAGAAGAAGAAGAAAATGGAGAAGTCGGCGAGCGAGAAGATG
                      ____________________________________________________________
consensus             TGCGCCGAGATTCCGGCGAAGAAGAAGAAGAAAATGGAGAAGTCGGCGAGCGAGAAGATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF014K07+          GAGGCGGAGGAGACGGAAGAGGAAGTGGATCGGCGGCGGCCGGCGACAGTAAGAGAGAAG
                      ____________________________________________________________
consensus             GAGGCGGAGGAGACGGAAGAGGAAGTGGATCGGCGGCGGCCGGCGACAGTAAGAGAGAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF014K07+          AAGACGACGTTCGAGGAAGAAGAAGACGATGAGGCGGTGGACGAGAAAGCCGACGACTTC
                      ____________________________________________________________
consensus             AAGACGACGTTCGAGGAAGAAGAAGACGATGAGGCGGTGGACGAGAAAGCCGACGACTTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF014K07+          ATTAACAGGTTTAAGCAGCAGCTAAAGTTACAGAGGCTTGACTCCCTCCTCCGGTACAAG
                      ____________________________________________________________
consensus             ATTAACAGGTTTAAGCAGCAGCTAAAGTTACAGAGGCTTGACTCCCTCCTCCGGTACAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF014K07+          GAAACCCTGCACAGGAGAATGGGAAACTAGGGACTTGTACTTCCTGGACCAACGTGCCCA
                      ____________________________________________________________
consensus             GAAACCCTGCACAGGAGAATGGGAAACTAGGGACTTGTACTTCCTGGACCAACGTGCCCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF014K07+          TGGGTGCCCAAATCTTTTGTCGTATTAGCATGGGCATTCTGGTAATTTCCGCTGCCTGCA
                      ____________________________________________________________
consensus             TGGGTGCCCAAATCTTTTGTCGTATTAGCATGGGCATTCTGGTAATTTCCGCTGCCTGCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF014K07+          AAACAGTGGGAAAGCTCTGAAAATAATGGTGGTTTTGTTTTCTTTTTGTATTCTGGTCTT
                      ____________________________________________________________
consensus             AAACAGTGGGAAAGCTCTGAAAATAATGGTGGTTTTGTTTTCTTTTTGTATTCTGGTCTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF014K07+          CAGTTGTAGGGTAATTATGTTTTGCTTAGGTAAATTTCTTCAGTTCAATAATATTGGCAG
                      ____________________________________________________________
consensus             CAGTTGTAGGGTAATTATGTTTTGCTTAGGTAAATTTCTTCAGTTCAATAATATTGGCAG