Contig 008474:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF013H06Sequence546008474 (2)ref|XP_009764737.1|3e-68PREDICTED: F-box protein At1g70590 [Nicotiana sylvestris]762008474 (2)ref|XP_010248623.1|2e-99PREDICTED: F-box protein At1g70590 [Nelumbo nucifera]

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF013H06- GACCTTCACCGACGTACCAATGAAGCAGCAGAAGCAGAAAACATGGCCGTCCA
                      ____________________________________________________________
consensus GACCTTCACCGACGTACCAATGAAGCAGCAGAAGCAGAAAACATGGCCGTCCA
 
. : . : . : . : . : . :
JMSF013H06- AATTCGAAACTCCTCGCTTCACCGCCCTCCCTTTCGTCAAGAAACACCCCACCCGACCTG
                      ____________________________________________________________
consensus AATTCGAAACTCCTCGCTTCACCGCCCTCCCTTTCGTCAAGAAACACCCCACCCGACCTG
 
. : . : . : . : . : . :
JMSF013H06- ACCCCGGCGGACCCAAGAACAACTCCTCGAACCCGCCGCCGTTCCCCGATCCCTGCGACG
                      ____________________________________________________________
consensus ACCCCGGCGGACCCAAGAACAACTCCTCGAACCCGCCGCCGTTCCCCGATCCCTGCGACG
 
. : . : . : . : . : . :
JMSF013H06- ACTACCACCGCTGCCACCAAGACTACTCCCATCTCCCCTACGACGTCCTGATGAAAATCG
                      ____________________________________________________________
consensus ACTACCACCGCTGCCACCAAGACTACTCCCATCTCCCCTACGACGTCCTGATGAAAATCG
 
. : . : . : . : . : . :
JMSF013H06- CGGCGACTTTCTCGTGGACCCACCTGCGCACGGCGTCGCTGGTCTGCAAGTCGTGGAACG
                      ____________________________________________________________
consensus CGGCGACTTTCTCGTGGACCCACCTGCGCACGGCGTCGCTGGTCTGCAAGTCGTGGAACG
 
. : . : . : . : . : . :
JMSF013H06- ACGCGCTCCGCCCTTTGAGGGACGCGATGGTGTTCCTCAGATGGGGGAAGCGATTCAAGC
                      ____________________________________________________________
consensus ACGCGCTCCGCCCTTTGAGGGACGCGATGGTGTTCCTCAGATGGGGGAAGCGATTCAAGC
 
. : . : . : . : . : . :
JMSF013H06- ATGGGCGTGGTGGGGTGAAACCCAACTCGGCCAAGGCCCTCGATTGCTTTCTCAAAGGGG
                      ____________________________________________________________
consensus ATGGGCGTGGTGGGGTGAAACCCAACTCGGCCAAGGCCCTCGATTGCTTTCTCAAAGGGG
 
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JMSF013H06- CGGCGCGTGGGTCTACTCTCGCAATGGTGGATGCTGGGCTTTTGTACTGGGAGATGGGGA
rJMSF013H06+ TCGCAATGGTGGATGCTGGGCTTTTGTACTGGGAGATGGGGA
                      ____________________________________________________________
consensus CGGCGCGTGGGTCTACTCTCGCAATGGTGGATGCTGGGCTTTTGTACTGGGAGATGGGGA
 
. : . : . : . : . : . :
JMSF013H06- GAAAGGAGGAGGGAATTGC-TTGGTACAGTAAGGCTGCTCAGCTCGGCGACCCTACTGGG
rJMSF013H06+ GAAAGGAGGAGGGAATTGCNTTGGTACAGTAAGGCTGCTCAGCTCGGCGACCCTACTGGG
                      ____________________________________________________________
consensus GAAAGGAGGAGGGAATTGCNTTGGTACAGTAAGGCTGCTCAGCTCGGCGACCCTACTGGG
 
. : . : . : . : . : . :
JMSF013H06- CAGTGCAATTTGGG
rJMSF013H06+ CAGTGCAATTTGGGAATTTGTTACTTGCAAGGTGAGACTCCAAACTCCCAACAAGCTGTT
                      ____________________________________________________________
consensus CAGTGCAATTTGGGAATTTGTTACTTGCAAGGTGAGACTCCAAACTCCCAACAAGCTGTT
 
. : . : . : . : . : . :
rJMSF013H06+ AAGTGGCTGTACAAAGCTTCTGTTGCTGGCCATGTTCGTGCCCAGTACCAACTTGCACTG
                      ____________________________________________________________
consensus AAGTGGCTGTACAAAGCTTCTGTTGCTGGCCATGTTCGTGCCCAGTACCAACTTGCACTG
 
. : . : . : . : . : . :
rJMSF013H06+ TGTTTTCATCAGGGTCGTGGTGGTGTGCATAAGAATTTTCAGGAAGCGGCAAAGTGGTAT
                      ____________________________________________________________
consensus TGTTTTCATCAGGGTCGTGGTGGTGTGCATAAGAATTTTCAGGAAGCGGCAAAGTGGTAT
 
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rJMSF013H06+ CTGAAAGCTGCTGAAGGTGGATATGTGCGCGCCATGTATAACACTTCGCTGTGCTACTCT
                      ____________________________________________________________
consensus CTGAAAGCTGCTGAAGGTGGATATGTGCGCGCCATGTATAACACTTCGCTGTGCTACTCT
 
. : . : . : . : . : . :
rJMSF013H06+ TTTGGAGAAGGTTTAATGCAGTCTCATAGGTTAGGGAGAAAATGGATGAAGAGGGCTGCT
                      ____________________________________________________________
consensus TTTGGAGAAGGTTTAATGCAGTCTCATAGGTTAGGGAGAAAATGGATGAAGAGGGCTGCT
 
. : . : . : . : . : . :
rJMSF013H06+ GATCGGGGTCACAGCAAGGCTCAGTTCGACCATGGATTAAGTCTCTTTTCTGAAGGGGAT
                      ____________________________________________________________
consensus GATCGGGGTCACAGCAAGGCTCAGTTCGACCATGGATTAAGTCTCTTTTCTGAAGGGGAT
 
. : . : . : . : . : . :
rJMSF013H06+ ATGATGAAAGCTGTGGTGTACCTGGAACTTGCGACTCGTGCTGGTGAGAGAGCCGCGAAT
                      ____________________________________________________________
consensus ATGATGAAAGCTGTGGTGTACCTGGAACTTGCGACTCGTGCTGGTGAGAGAGCCGCGAAT
 
. : . : . : . : . : . :
rJMSF013H06+ CATGTCAAGAACGTCGTACTTCAACAGCTATCAACATCTTCCCGCGATCGAGCTATGCTA
                      ____________________________________________________________
consensus CATGTCAAGAACGTCGTACTTCAACAGCTATCAACATCTTCCCGCGATCGAGCTATGCTA
 
. : . : . : . : . : . :
rJMSF013H06+ GTGGTTGATAATTGGCGCGCTTTGCCTTCCACGCGTTGATTCATCATACTTTCCACTCGG
                      ____________________________________________________________
consensus GTGGTTGATAATTGGCGCGCTTTGCCTTCCACGCGTTGATTCATCATACTTTCCACTCGG
 
. : . : . : . : . : . :
rJMSF013H06+ TCGAAAGGTTATGTGACCTACCAAATCCTCAAACCTTAGGGTAAAAGGCAAGCACTCAAC
                      ____________________________________________________________
consensus TCGAAAGGTTATGTGACCTACCAAATCCTCAAACCTTAGGGTAAAAGGCAAGCACTCAAC
 
. : . : . : . : . : . :
rJMSF013H06+ TCTTGTCATATGTTTTCTATAAGCTTCACTTCTCCCACTTGTCTCTCATCTGAAATGACA
                      ____________________________________________________________
consensus TCTTGTCATATGTTTTCTATAAGCTTCACTTCTCCCACTTGTCTCTCATCTGAAATGACA