Contig 008474:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF013H06Sequence546008474 (2)ref|XP_009764737.1|3e-68PREDICTED: F-box protein At1g70590 [Nicotiana sylvestris]762008474 (2)ref|XP_010248623.1|2e-99PREDICTED: F-box protein At1g70590 [Nelumbo nucifera]

Alignment

This contig is upended


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JMSF013H06-                  GACCTTCACCGACGTACCAATGAAGCAGCAGAAGCAGAAAACATGGCCGTCCA
                      ____________________________________________________________
consensus                    GACCTTCACCGACGTACCAATGAAGCAGCAGAAGCAGAAAACATGGCCGTCCA
 
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JMSF013H06-           AATTCGAAACTCCTCGCTTCACCGCCCTCCCTTTCGTCAAGAAACACCCCACCCGACCTG
                      ____________________________________________________________
consensus             AATTCGAAACTCCTCGCTTCACCGCCCTCCCTTTCGTCAAGAAACACCCCACCCGACCTG
 
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JMSF013H06-           ACCCCGGCGGACCCAAGAACAACTCCTCGAACCCGCCGCCGTTCCCCGATCCCTGCGACG
                      ____________________________________________________________
consensus             ACCCCGGCGGACCCAAGAACAACTCCTCGAACCCGCCGCCGTTCCCCGATCCCTGCGACG
 
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JMSF013H06-           ACTACCACCGCTGCCACCAAGACTACTCCCATCTCCCCTACGACGTCCTGATGAAAATCG
                      ____________________________________________________________
consensus             ACTACCACCGCTGCCACCAAGACTACTCCCATCTCCCCTACGACGTCCTGATGAAAATCG
 
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JMSF013H06-           CGGCGACTTTCTCGTGGACCCACCTGCGCACGGCGTCGCTGGTCTGCAAGTCGTGGAACG
                      ____________________________________________________________
consensus             CGGCGACTTTCTCGTGGACCCACCTGCGCACGGCGTCGCTGGTCTGCAAGTCGTGGAACG
 
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JMSF013H06-           ACGCGCTCCGCCCTTTGAGGGACGCGATGGTGTTCCTCAGATGGGGGAAGCGATTCAAGC
                      ____________________________________________________________
consensus             ACGCGCTCCGCCCTTTGAGGGACGCGATGGTGTTCCTCAGATGGGGGAAGCGATTCAAGC
 
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JMSF013H06-           ATGGGCGTGGTGGGGTGAAACCCAACTCGGCCAAGGCCCTCGATTGCTTTCTCAAAGGGG
                      ____________________________________________________________
consensus             ATGGGCGTGGTGGGGTGAAACCCAACTCGGCCAAGGCCCTCGATTGCTTTCTCAAAGGGG
 
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JMSF013H06-           CGGCGCGTGGGTCTACTCTCGCAATGGTGGATGCTGGGCTTTTGTACTGGGAGATGGGGA
rJMSF013H06+                            TCGCAATGGTGGATGCTGGGCTTTTGTACTGGGAGATGGGGA
                      ____________________________________________________________
consensus             CGGCGCGTGGGTCTACTCTCGCAATGGTGGATGCTGGGCTTTTGTACTGGGAGATGGGGA
 
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JMSF013H06-           GAAAGGAGGAGGGAATTGC-TTGGTACAGTAAGGCTGCTCAGCTCGGCGACCCTACTGGG
rJMSF013H06+          GAAAGGAGGAGGGAATTGCNTTGGTACAGTAAGGCTGCTCAGCTCGGCGACCCTACTGGG
                      ____________________________________________________________
consensus             GAAAGGAGGAGGGAATTGCNTTGGTACAGTAAGGCTGCTCAGCTCGGCGACCCTACTGGG
 
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JMSF013H06-           CAGTGCAATTTGGG                                              
rJMSF013H06+          CAGTGCAATTTGGGAATTTGTTACTTGCAAGGTGAGACTCCAAACTCCCAACAAGCTGTT
                      ____________________________________________________________
consensus             CAGTGCAATTTGGGAATTTGTTACTTGCAAGGTGAGACTCCAAACTCCCAACAAGCTGTT
 
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rJMSF013H06+          AAGTGGCTGTACAAAGCTTCTGTTGCTGGCCATGTTCGTGCCCAGTACCAACTTGCACTG
                      ____________________________________________________________
consensus             AAGTGGCTGTACAAAGCTTCTGTTGCTGGCCATGTTCGTGCCCAGTACCAACTTGCACTG
 
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rJMSF013H06+          TGTTTTCATCAGGGTCGTGGTGGTGTGCATAAGAATTTTCAGGAAGCGGCAAAGTGGTAT
                      ____________________________________________________________
consensus             TGTTTTCATCAGGGTCGTGGTGGTGTGCATAAGAATTTTCAGGAAGCGGCAAAGTGGTAT
 
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rJMSF013H06+          CTGAAAGCTGCTGAAGGTGGATATGTGCGCGCCATGTATAACACTTCGCTGTGCTACTCT
                      ____________________________________________________________
consensus             CTGAAAGCTGCTGAAGGTGGATATGTGCGCGCCATGTATAACACTTCGCTGTGCTACTCT
 
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rJMSF013H06+          TTTGGAGAAGGTTTAATGCAGTCTCATAGGTTAGGGAGAAAATGGATGAAGAGGGCTGCT
                      ____________________________________________________________
consensus             TTTGGAGAAGGTTTAATGCAGTCTCATAGGTTAGGGAGAAAATGGATGAAGAGGGCTGCT
 
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rJMSF013H06+          GATCGGGGTCACAGCAAGGCTCAGTTCGACCATGGATTAAGTCTCTTTTCTGAAGGGGAT
                      ____________________________________________________________
consensus             GATCGGGGTCACAGCAAGGCTCAGTTCGACCATGGATTAAGTCTCTTTTCTGAAGGGGAT
 
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rJMSF013H06+          ATGATGAAAGCTGTGGTGTACCTGGAACTTGCGACTCGTGCTGGTGAGAGAGCCGCGAAT
                      ____________________________________________________________
consensus             ATGATGAAAGCTGTGGTGTACCTGGAACTTGCGACTCGTGCTGGTGAGAGAGCCGCGAAT
 
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rJMSF013H06+          CATGTCAAGAACGTCGTACTTCAACAGCTATCAACATCTTCCCGCGATCGAGCTATGCTA
                      ____________________________________________________________
consensus             CATGTCAAGAACGTCGTACTTCAACAGCTATCAACATCTTCCCGCGATCGAGCTATGCTA
 
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rJMSF013H06+          GTGGTTGATAATTGGCGCGCTTTGCCTTCCACGCGTTGATTCATCATACTTTCCACTCGG
                      ____________________________________________________________
consensus             GTGGTTGATAATTGGCGCGCTTTGCCTTCCACGCGTTGATTCATCATACTTTCCACTCGG
 
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rJMSF013H06+          TCGAAAGGTTATGTGACCTACCAAATCCTCAAACCTTAGGGTAAAAGGCAAGCACTCAAC
                      ____________________________________________________________
consensus             TCGAAAGGTTATGTGACCTACCAAATCCTCAAACCTTAGGGTAAAAGGCAAGCACTCAAC
 
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rJMSF013H06+          TCTTGTCATATGTTTTCTATAAGCTTCACTTCTCCCACTTGTCTCTCATCTGAAATGACA
                      ____________________________________________________________
consensus             TCTTGTCATATGTTTTCTATAAGCTTCACTTCTCCCACTTGTCTCTCATCTGAAATGACA