Contig 008472:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF012N21Sequence441008472 (2)ref|XP_009616922.1|2e-27PREDICTED: uncharacterized protein LOC104109355 isoform X2 [Nicotiana tomentosi771008472 (2)ref|XP_006359313.1|272PREDICTED: uncharacterized protein LOC102598426 [Solanum tuberosum]

Alignment

This contig is upended


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JMSF012N21-                               GGGATGCAGTTTCGTCCCACGTAACCAAACTGTTGCTTTG
                      ____________________________________________________________
consensus                                 GGGATGCAGTTTCGTCCCACGTAACCAAACTGTTGCTTTG
 
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JMSF012N21-           CAGGCTCCAGCTCTGCTGCTTCCACCAGAAATGACAAGTATACTAGGGAGCCACCCTTGT
                      ____________________________________________________________
consensus             CAGGCTCCAGCTCTGCTGCTTCCACCAGAAATGACAAGTATACTAGGGAGCCACCCTTGT
 
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JMSF012N21-           CTTTGCTCAAGACGAGTTCCTAAGCATGTTTGGAAGGAAAGAAGTTGCAAAGCTTCATGT
                      ____________________________________________________________
consensus             CTTTGCTCAAGACGAGTTCCTAAGCATGTTTGGAAGGAAAGAAGTTGCAAAGCTTCATGT
 
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JMSF012N21-           TTTAATTATTTGGATCTAGGCACATCTTCTAAAGAATTATTCTCTCCAAGATGTCAACAA
rJMSF012N21+                   TTGGATCTAGGCACATCTTNTAAAGAATTATTCTCTCCAAGATGTCAACAA
                      ____________________________________________________________
consensus             TTTAATTATTTGGATCTAGGCACATCTTCTAAAGAATTATTCTCTCCAAGATGTCAACAA
 
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JMSF012N21-           TTTATGAGTCGCCGCAACCAAAATATTAGAAAACCTTGGACAACTTTTGCTGCTAGAATG
rJMSF012N21+          TTTATGAGTCGCCGCAACCAAAATATTAGAAAACCTTGGACAACTTTTGCTGCTAGAATG
                      ____________________________________________________________
consensus             TTTATGAGTCGCCGCAACCAAAATATTAGAAAACCTTGGACAACTTTTGCTGCTAGAATG
 
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JMSF012N21-           GATGATGCAGAGGATCCAGATGACTCAGAAGATGAAGTAGACAAGGAAATGTCGCCTGAA
rJMSF012N21+          GATGATGCAGAGGATCCAGATGACTCAGAAGATGAAGTAGACAAGGAAATGTCGCCTGAA
                      ____________________________________________________________
consensus             GATGATGCAGAGGATCCAGATGACTCAGAAGATGAAGTAGACAAGGAAATGTCGCCTGAA
 
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JMSF012N21-           AACTACAGTGGATCGGTAAATAATGATGTATTAAGAGAGAAGCTTGAAAGAATAGTTGGA
rJMSF012N21+          AACTACAGTGGATCGGTAAATAATGATGTATTAAGAGAGAAGCTTGAAAGAATAGTTGGA
                      ____________________________________________________________
consensus             AACTACAGTGGATCGGTAAATAATGATGTATTAAGAGAGAAGCTTGAAAGAATAGTTGGA
 
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JMSF012N21-           AAGGATGATTCTTCGTTCAGTGGAATTGACCTGGCGACTCT                   
rJMSF012N21+          AAGGATGATTCTTCGTTCAGTGGAATTGACCTGGCGACTCTAATACGGAATAAATATGGC
                      ____________________________________________________________
consensus             AAGGATGATTCTTCGTTCAGTGGAATTGACCTGGCGACTCTAATACGGAATAAATATGGC
 
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rJMSF012N21+          CGGTCCTATGATGTTCAATTAATAAAGAAGGAATTCATGGGAAGAAATCTTCTGGCTTTA
                      ____________________________________________________________
consensus             CGGTCCTATGATGTTCAATTAATAAAGAAGGAATTCATGGGAAGAAATCTTCTGGCTTTA
 
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rJMSF012N21+          AATGTAATGTGGAAGTACATGGAACAGAGATCCTTTCCACTTACTGAAGAAGAGTACCTA
                      ____________________________________________________________
consensus             AATGTAATGTGGAAGTACATGGAACAGAGATCCTTTCCACTTACTGAAGAAGAGTACCTA
 
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rJMSF012N21+          CTTAGGCTAGATGATGTAGCAAACACGTTGAAGTGCTGGGGAGCTGTCTCACATGTTCGT
                      ____________________________________________________________
consensus             CTTAGGCTAGATGATGTAGCAAACACGTTGAAGTGCTGGGGAGCTGTCTCACATGTTCGT
 
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rJMSF012N21+          AATACCCTTGAAAATGTGAAAGAGCGGCCTCGGATAGGCAAGGCAGTGAGCATTTTTATA
                      ____________________________________________________________
consensus             AATACCCTTGAAAATGTGAAAGAGCGGCCTCGGATAGGCAAGGCAGTGAGCATTTTTATA
 
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rJMSF012N21+          GATATGGATGAATCTGGCGGCCGTGCAAACGAATGGATATACAAGTAGAAAGTTTAGAAC
                      ____________________________________________________________
consensus             GATATGGATGAATCTGGCGGCCGTGCAAACGAATGGATATACAAGTAGAAAGTTTAGAAC
 
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rJMSF012N21+          GCCAAGTATTAAATATCAGGGAGCAATGATCTCCAATCAATTCACTTAGTTGCTGTTGAA
                      ____________________________________________________________
consensus             GCCAAGTATTAAATATCAGGGAGCAATGATCTCCAATCAATTCACTTAGTTGCTGTTGAA
 
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rJMSF012N21+          CAGGGCACAACTCACAGCCAAATCACCGTATAATGTGTTGTAGAACGAGTCACGCATTAG
                      ____________________________________________________________
consensus             CAGGGCACAACTCACAGCCAAATCACCGTATAATGTGTTGTAGAACGAGTCACGCATTAG
 
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rJMSF012N21+          AATTCCATTCTGATGACTTTCTGCAGTTTCTGGGCCAGGGTGATATGTTTGGACCAATTG
                      ____________________________________________________________
consensus             AATTCCATTCTGATGACTTTCTGCAGTTTCTGGGCCAGGGTGATATGTTTGGACCAATTG