| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF001H05 | Sequence | 402 | 006435 (4) | ref|XP_009787103.1| | 1e-21 | PREDICTED: tryptophan--tRNA ligase, mitochondrial isoform X2 [Nicotiana sylvest | 741 | 008469 (3) | gb|KDP34172.1| | 6e-95 | hypothetical protein JCGZ_07743 [Jatropha curcas] |
| JMSF012D13 | Sequence | 391 | 006435 (4) | ref|XP_009603437.1| | 1e-08 | PREDICTED: tryptophan--tRNA ligase, mitochondrial isoform X2 [Nicotiana tomento | 779 | 008469 (3) | gb|AFK45558.1| | 6e-53 | unknown [Lotus japonicus] |
| JMSF024C16 | Sequence | 674 | 021061 | ref|XP_009603437.1| | 1e-34 | PREDICTED: tryptophan--tRNA ligase, mitochondrial isoform X2 [Nicotiana tomento | 766 | 008469 (3) | gb|AFK45558.1| | 3e-67 | unknown [Lotus japonicus] |
This contig is upended
. : . : . : . : . : . :
rJMSF001H05+ ATTT
____________________________________________________________
consensus ATTT
. : . : . : . : . : . :
rJMSF001H05+ AAGGTACCTGAACCACTCATTCCACCTGCTGGAGCTCGAATAATGTCTCTTACTGATGGC
____________________________________________________________
consensus AAGGTACCTGAACCACTCATTCCACCTGCTGGAGCTCGAATAATGTCTCTTACTGATGGC
. : . : . : . : . : . :
rJMSF001H05+ CTATCAAAGATGTCGAAGTCAGCACCTTCTGATCAATCTCGTATCAACTTGCTTGATCCA
rJMSF024C16+ CTTGATCCA
____________________________________________________________
consensus CTATCAAAGATGTCGAAGTCAGCACCTTCTGATCAATCTCGTATCAACTTGCTTGATCCA
. : . : . : . : . : . :
rJMSF001H05+ AAAGATGTAATTGCAAATAAAATAAAACGATGCAAGACTGACGCATTAAGTCGCTTGGAA
rJMSF024C16+ AANGATGTAATAGCAAATAAGATAAAACGATGCAAGACTGACGCATTAAGTGGCTTGGAA
____________________________________________________________
consensus AAAGATGTAATTGCAAATAAGATAAAACGATGCAAGACTGACGCATTAAGTGGCTTGGAA
. : . : . : . : . : . :
rJMSF001H05+ TTTGACAATCCTGAAAGACCGGAATGCAACAACCTTCTTTCTATTTATCAGCTTGTTTCA
rJMSF024C16+ TTTGACAATCCTGAAAGACCGGAATGCAACAACCTTCTTTCTATTTATCAGCTTGTTTCA
rJMSF012D13+ TTGACNATCCTGAAAGACCGGAATGCAACAACCTTCTTTCTATTTATCAGCTTGTTTCA
____________________________________________________________
consensus TTTGACAATCCTGAAAGACCGGAATGCAACAACCTTCTTTCTATTTATCAGCTTGTTTCA
. : . : . : . : . : . :
rJMSF001H05+ GGCAAGACAAAACAGGAGGTTGCAGAGGAATGCCAAAATATGAATTGGGGAACATTTAAA
rJMSF024C16+ GGCAAGACAAAACAGGAGGTTGCAGAGGAATGCCAAAATATGAATTGGGGAACATTTAAA
rJMSF012D13+ GGCAAGACAAAACAGGAGGTTGCAGAGGAATGCCAAAATATGAATTGGGGAACATTTAAA
____________________________________________________________
consensus GGCAAGACAAAACAGGAGGTTGCAGAGGAATGCCAAAATATGAATTGGGGAACATTTAAA
. : . : . : . : . : . :
rJMSF001H05+ CCCTTGCTTACAGATGCTTTAGTTGCACATCTACATCCTATCCAGGTTCGTTATGAGGAA
rJMSF024C16+ CCCTTGCTTACAGATGCTTTAGTTGCACATCTACATCCTATCCAGGTTCGTTATGAGGAA
rJMSF012D13+ CCCTTGCTTACAGATGCTTTAGTTGCACATCTACATCCTATCCAGGTTCGTTATGAGGAA
____________________________________________________________
consensus CCCTTGCTTACAGATGCTTTAGTTGCACATCTACATCCTATCCAGGTTCGTTATGAGGAA
. : . : . : . : . : . :
rJMSF001H05+ ATAATGTCAGATACTACTTATTTGGACGAAGTTTTGGTCAAGGGTGCTAGAAAAGCATCA
rJMSF024C16+ ATAATGTCAGATACTACTTATTTGGATGAAGTTTTGGCCAAGGGTGCTAGAAAAGCATCA
rJMSF012D13+ ATAATGTCAGATACTACTTATTTGGATGAAGTTTTGGCCAACGGTGCTAGAAAAGCATCA
____________________________________________________________
consensus ATAATGTCAGATACTACTTATTTGGATGAAGTTTTGGCCAAGGGTGCTAGAAAAGCATCA
. : . : . : . : . : . :
rJMSF001H05+ GATGTTGCAAATGTTACTCTCAATAATGTGTACGAGGCAATGGGATTCTTGCGAAGACAA
rJMSF024C16+ GATGTTGCAAATGTTACTCTCAATAATGTGTACCAGGCAATGGGATTCTTGCGAAGACAA
rJMSF012D13+ GATGTTGCAAATGTTACTCTCAATAATGTGTACCAGGCAATGGGATTCTTGCGAAGACAA
____________________________________________________________
consensus GATGTTGCAAATGTTACTCTCAATAATGTGTACCAGGCAATGGGATTCTTGCGAAGACAA
. : . : . : . : . : . :
rJMSF001H05+ TAATCCATGCTGTATGAATAATCTGATAAGAAAGGTGCCTGCAATAACAACCTTGATGAT
rJMSF024C16+ TAATCCATGCTGTATGAATAATCTGATAAGAAAGGTGCCTGCAATAGCAACCTTGATGAT
rJMSF012D13+ TAATCCATGCTGTATGAATAATCTGATAAGAAAGGTGCCTGCAATAGCAACCTTGATGAT
____________________________________________________________
consensus TAATCCATGCTGTATGAATAATCTGATAAGAAAGGTGCCTGCAATAGCAACCTTGATGAT
. : . : . : . : . : . :
rJMSF001H05+ GCCTTACTGGTACACCCAATACTCTTTACAAGTCAAGTTATACCTGCCAGTTCA-CCCTT
rJMSF024C16+ GCCTTATTGGTACACCCAATACTCTTTACAAGTCAAGTTATACCTGCCAGTTCACCCCTT
rJMSF012D13+ GCCTTATTGGTACACCCAATACTCTTTACAAGTCAAGTTATACCTGCCAGTTCACCCCTT
____________________________________________________________
consensus GCCTTATTGGTACACCCAATACTCTTTACAAGTCAAGTTATACCTGCCAGTTCACCCCTT
. : . : . : . : . : . :
rJMSF001H05+ GATGAAGATAGAGATATTCACAATAGTGGCA
rJMSF024C16+ GATGAAGATAGAGATATTCACAATAGTGGCAGAAGGAGCCCACCGGCATTGAAGATGATC
rJMSF012D13+ GATGAAGATAGAGATATTCACAATAGTGGCAGAAGGAGCCCACCGGCATTGAAGATGATC
____________________________________________________________
consensus GATGAAGATAGAGATATTCACAATAGTGGCAGAAGGAGCCCACCGGCATTGAAGATGATC
. : . : . : . : . : . :
rJMSF024C16+ AAGACTTCTCTCACTTAT-ATTCTAATTCGTGATCAAATACAGGTGTTCAACTCTCCAAC
rJMSF012D13+ AAGACTTCTCTCACTTATAATTCTAATTCGTGATCAAATACAGGTGTTCAACTCTCCAAC
____________________________________________________________
consensus AAGACTTCTCTCACTTATAATTCTAATTCGTGATCAAATACAGGTGTTCAACTCTCCAAC
. : . : . : . : . : . :
rJMSF024C16+ TGCCTCCTCGTTACAATCATAATTTGTTTCTTATATGAAGGTTTGGCATTGTTATTTGGA
rJMSF012D13+ TGCCTCCTCGTTACAATCATAATTTGTTTCTTATATGAAGGTTTGGCATTGTTATTTGGA
____________________________________________________________
consensus TGCCTCCTCGTTACAATCATAATTTGTTTCTTATATGAAGGTTTGGCATTGTTATTTGGA
. : . : . : . : . : . :
rJMSF024C16+ GAATACACTGCAAACCCCTGAATGACTAAACTAGGCTGAGATTTATATTTTTGTGCCAAG
rJMSF012D13+ GAATACACTGCAAACCCCTGAATGACTAAACTAGGCTGAGATTTATATTTTTGTGCCAAG
____________________________________________________________
consensus GAATACACTGCAAACCCCTGAATGACTAAACTAGGCTGAGATTTATATTTTTGTGCCAAG
. : . : . : . : . : . :
rJMSF024C16+ ATGAGGCTGGATGTCTGACCACTTGTTACTTTTGGT
rJMSF012D13+ ATGAGGCTGGATGTCTGACCACTTGTTACTTTTGGTTACCTTTTATTGCATACATGCCAA
____________________________________________________________
consensus ATGAGGCTGGATGTCTGACCACTTGTTACTTTTGGTTACCTTTTATTGCATACATGCCAA
. : . : . : . : . : . :
rJMSF012D13+ AGTTTATTTGAGTTAATGTGTCTTAGGTTTTGGTACCAATAACCCTATTGGAAACGTTTG
____________________________________________________________
consensus AGTTTATTTGAGTTAATGTGTCTTAGGTTTTGGTACCAATAACCCTATTGGAAACGTTTG