Contig 008468:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS089B02Sequence641008468 (2)ref|XP_009794124.1|2e-130PREDICTED: putative pentatricopeptide repeat-containing protein At5g52630 [Nico
JMSF012B12Sequence497006434 (2)ref|XP_002273710.2|5e-06PREDICTED: pentatricopeptide repeat-containing protein At5g04780-like [Vitis vi688008468 (2)ref|XP_009600826.1|2e-127PREDICTED: putative pentatricopeptide repeat-containing protein At5g52630 [Nico

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS089B02-                                                                  ACCAA
                      ____________________________________________________________
consensus                                                                    ACCAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS089B02-           CAAGAGCACTACGCCTGCATGATTGATGTCCTGGGGCGAGCAGGAGAGCTGGACGAGGCT
                      ____________________________________________________________
consensus             CAAGAGCACTACGCCTGCATGATTGATGTCCTGGGGCGAGCAGGAGAGCTGGACGAGGCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS089B02-           ATTGATCTCATTAATCAGATGCCTTTCGAGGCTAATGCATCTGTATGGGGGGCTCTTCTC
rJMSF012B12+                                          TAATGCATCTGTATGGGGGGCTCTTCTC
                      ____________________________________________________________
consensus             ATTGATCTCATTAATCAGATGCCTTTCGAGGCTAATGCATCTGTATGGGGGGCTCTTCTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS089B02-           GGTGCTGCAAGAATCCATAAAAACGTGCAGCTAGGCGAAGAAGCTGCACACAAGCTTTTC
rJMSF012B12+          GGTGCTGCAAGAATCCATAAAAACGTGCAGCTAGGCGAAGAAGCTGCACACAAGCTTTTC
                      ____________________________________________________________
consensus             GGTGCTGCAAGAATCCATAAAAACGTGCAGCTAGGCGAAGAAGCTGCACACAAGCTTTTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS089B02-           AACCTTGAACCAGAGAAATCTGGGACACATGTTCTTCTTGCAAATATTTATGCATCAGTT
rJMSF012B12+          AACCTTGAACCAGAGAAATCTGGGACACATGTTCTTCTTGCAAATATTTATGCATCAGTT
                      ____________________________________________________________
consensus             AACCTTGAACCAGAGAAATCTGGGACACATGTTCTTCTTGCAAATATTTATGCATCAGTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS089B02-           GGGCTGTGGGGGAATGTAGCAGAGGTGAGAAGGTTGATGAAAGATAGCAAAGTAAAGAAG
rJMSF012B12+          GGGCTGTGGGGGAATGTAGCAGAGGTGAGAAGGTTGATGAAAGATAGCAAAGTAAAGAAG
                      ____________________________________________________________
consensus             GGGCTGTGGGGGAATGTAGCAGAGGTGAGAAGGTTGATGAAAGATAGCAAAGTAAAGAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS089B02-           GAACCTGGGATGAGCTGGATTGAAGTCAAGGACGCGGTATACTCATTTATCGTGGGCGAC
rJMSF012B12+          GAACCTGGGATGAGCTGGATTGAAGTCAAGGACGCGGTATACTCATTTATCGTGGGCGAC
                      ____________________________________________________________
consensus             GAACCTGGGATGAGCTGGATTGAAGTCAAGGACGCGGTATACTCATTTATCGTGGGCGAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS089B02-           AGAAGCCATCCTAGAAGCCAAGAAATATACGCGAAACTCGAGGAGTTGGGAGACCTAATG
rJMSF012B12+          AGAAGCCATCCTAGAAGCCAAGAAATATACGCGAAACTCGAGGAGTTGGGAGACCTAATG
                      ____________________________________________________________
consensus             AGAAGCCATCCTAGAAGCCAAGAAATATACGCGAAACTCGAGGAGTTGGGAGACCTAATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS089B02-           GTTAAAGCTGGGTATGTTCCAATGGTAGAGGTAGATCTCCATGATGTCGAAAGGCGACAA
rJMSF012B12+          GTTAAAGCTGGGTATGTTCCAATGGTAGAGGTAGATCTCCATGATGTCGAAAGGCGACAA
                      ____________________________________________________________
consensus             GTTAAAGCTGGGTATGTTCCAATGGTAGAGGTAGATCTCCATGATGTCGAAAGGCGACAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS089B02-           AAAGAGATCCTCCTCTCTTACCACAGCGAGAAACTCGCTGTGGCATTCGGGTTGATTGCT
rJMSF012B12+          AAAGAGATCCTCCTCTCTTACCACAGCGAGAAACTCGCTGTGGCATTCGGGTTGATTGCT
                      ____________________________________________________________
consensus             AAAGAGATCCTCCTCTCTTACCACAGCGAGAAACTCGCTGTGGCATTCGGGTTGATTGCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS089B02-           ACTCCACCTGGAGCTCCCATTAGGGTGAAGAAGAACCTTAGGATTTGCTTGGACTGCCAC
rJMSF012B12+          ACTCCACCTGGAGCTCCCATTAGGGTGAAGAAGAACCTTAGGATTTGCTTGGACTGCCAC
                      ____________________________________________________________
consensus             ACTCCACCTGGAGCTCCCATTAGGGTGAAGAAGAACCTTAGGATTTGCTTGGACTGCCAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS089B02-           ACAGCCTTCAAATTCATCTGCAAGATTGTCTCAAGA                        
rJMSF012B12+          ACAGCCTTCAAATTCATCTGCAAGATTGTCTCAAGAGAAATCATCATTAGAGATATCAAC
                      ____________________________________________________________
consensus             ACAGCCTTCAAATTCATCTGCAAGATTGTCTCAAGAGAAATCATCATTAGAGATATCAAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF012B12+          AGGTTCCACCATTTCAAAGATGGATCTTGTTCTTGTGGGGATTACTGGTAACCTTTCAAT
                      ____________________________________________________________
consensus             AGGTTCCACCATTTCAAAGATGGATCTTGTTCTTGTGGGGATTACTGGTAACCTTTCAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF012B12+          TCAATAGTGTTATACTTTCCATGTTTGAATCTTGTTGGTACGGCAGCAAGCTAGTCTCTT
                      ____________________________________________________________
consensus             TCAATAGTGTTATACTTTCCATGTTTGAATCTTGTTGGTACGGCAGCAAGCTAGTCTCTT