Contig 008467:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF011O08Sequence219015692721008467 (2)ref|XP_006366977.1|8e-121PREDICTED: F-box protein At2g27310-like [Solanum tuberosum]
JMSF041D23Sequence691008467 (2)ref|XP_004247155.1|9e-105PREDICTED: probable F-box protein At1g60180 [Solanum lycopersicum] ref|XP_004247649012720 (3)ref|XP_009589702.1|9e-22PREDICTED: protein TIFY 10B-like isoform X3 [Nicotiana tomentosiformis]

Alignment

This contig is upended


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JMSF041D23+             TTTTTTTTTTGGGTAAATACTTGCATACATTGTACTGTACTAGGAACAGCCAACAATG
rJMSF011O08-                                                                     G
                      ____________________________________________________________
consensus               TTTTTTTTTTGGGTAAATACTTGCATACATTGTACTGTACTAGGAACAGCCAACAATG
 
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JMSF041D23+           TCGGCCAGGAGAGATTTTCGAGTCACAACTCGAAAAGGATTGTTTCCCAATCCCGAGAGC
rJMSF011O08-          TCGGCCAGGAGAGATTTTCGAGTCACAACTCGAAAAGGATTGTTTCCCAATCCCGAGAGC
                      ____________________________________________________________
consensus             TCGGCCAGGAGAGATTTTCGAGTCACAACTCGAAAAGGATTGTTTCCCAATCCCGAGAGC
 
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JMSF041D23+           GGGGAAGGACTTAACGGGGCATTACAGAAAGTAGTACCAAAACGTGGCGCAGGCTGCTAT
rJMSF011O08-          GGGGAAGGACTTAACGGGGCATTACAGAAAGTAGTACCAAAACGTGGCGCAGGCTGCTAT
                      ____________________________________________________________
consensus             GGGGAAGGACTTAACGGGGCATTACAGAAAGTAGTACCAAAACGTGGCGCAGGCTGCTAT
 
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JMSF041D23+           GCCGCTAAGGATGTAGAGTCGATCCAGGCGGCTTTCGTTTCTCATCTTCTCTTCCTTCAG
rJMSF011O08-          GCCGCTAAGGATGTAGAGTCGATCCAGGCGGCTTTCGTTTCTCATCTTCTCTTCCTTCAG
                      ____________________________________________________________
consensus             GCCGCTAAGGATGTAGAGTCGATCCAGGCGGCTTTCGTTTCTCATCTTCTCTTCCTTCAG
 
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JMSF041D23+           CTCGCTCTGCACTTTCGAGTACAGCTGACAGGACTCGAGGGCCTCGTTGTAGTTCTTGCT
rJMSF011O08-          CTCGCTCTGCACTTTCGAGTACAGCTGACAGGACTCGAGGGCCTCGTTGTAGTTCTTGCT
                      ____________________________________________________________
consensus             CTCGCTCTGCACTTTCGAGTACAGCTGACAGGACTCGAGGGCCTCGTTGTAGTTCTTGCT
 
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JMSF041D23+           CCTTTGGCAGCTCAGCGCCTCCTTGAGGACGAGCAGGCTGTTCCTCCCGTTAACGTGGGC
rJMSF011O08-          CCTTTGGCAGCTCAGCGCCTCCTTGAGGACGAGCAGGCTGTTCCTCCCGTTAACGTGGGC
                      ____________________________________________________________
consensus             CCTTTGGCAGCTCAGCGCCTCCTTGAGGACGAGCAGGCTGTTCCTCCCGTTAACGTGGGC
 
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JMSF041D23+           GCCTTCCATGTCGCCTAACTGCATGCTTAGTTCGGTCATCTTGAGCGTTGTGTGGGCCCC
rJMSF011O08-          GCCTTCCATGTCGCCTAACTGCATGCTTAGTTCGGTCATCTTGAGCGTTGTGTGGGCCCC
                      ____________________________________________________________
consensus             GCCTTCCATGTCGCCTAACTGCATGCTTAGTTCGGTCATCTTGAGCGTTGTGTGGGCCCC
 
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JMSF041D23+           CCCGCCCCCGCCCCCGCCTTCTTCGGTGTGGATCACTCGGAACTTCATGAGAAGGATGCA
rJMSF011O08-          CCCGCCCCCGCCCCCGCCTTCTTCGGTGTGGATCACTCGGAACTTCATGAGAAGGATGCA
                      ____________________________________________________________
consensus             CCCGCCCCCGCCCCCGCCTTCTTCGGTGTGGATCACTCGGAACTTCATGAGAAGGATGCA
 
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JMSF041D23+           TTCCACGGCGTGGCATGGGAGGATGTCCTTGGCGGGGAGAATGGAGCCGAAGCGTATCAA
rJMSF011O08-          TTCCACGGCGTGGCATGGGAGGATGTCCTTGGCGGGGAGAATGGAGCCGAAGCGTATCAA
                      ____________________________________________________________
consensus             TTCCACGGCGTGGCATGGGAGGATGTCCTTGGCGGGGAGAATGGAGCCGAAGCGTATCAA
 
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JMSF041D23+           GAAGTCCTTGTCGGTTGGCCAGTGTCGCTGCCCCCCGAGAGGGCTCCAGCTCGAGAGATT
rJMSF011O08-          GAAGTCCTTGTCGGTTGGCCAGTGTCGCTGCCCCCCGAGAGGGCTCCAGCTCGAGAGATT
                      ____________________________________________________________
consensus             GAAGTCCTTGTCGGTTGGCCAGTGTCGCTGCCCCCCGAGAGGGCTCCAGCTCGAGAGATT
 
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JMSF041D23+           AGCGGCTTGTTTTATCTTCGTGTTGACGACGATCCAACTCAGCCTGATTCCATCTCGGAG
rJMSF011O08-          AGCGGCTTGTTTTATCTTCGTGTTGACGACGATCCAACTCAGCCTGATTCCATCTCGGAG
                      ____________________________________________________________
consensus             AGCGGCTTGTTTTATCTTCGTGTTGACGACGATCCAACTCAGCCTGATTCCATCTCGGAG
 
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JMSF041D23+           CTCCTGCCAGAGCTTCCCGTCTTTCCTCTCTTT                           
rJMSF011O08-          CTCCTGCCAGAGCTTCCCGTCTTTCCTCTCTTTCTCGAGGGACGTAATGGGCGGTAGACC
                      ____________________________________________________________
consensus             CTCCTGCCAGAGCTTCCCGTCTTTCCTCTCTTTCTCGAGGGACGTAATGGGCGGTAGACC
 
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rJMSF011O08-          GTCGGAAACCGAGAGAGTGACTTCACCCGCGGTGGCATCGTCGTCGTCTCGGGCAGCGTA
                      ____________________________________________________________
consensus             GTCGGAAACCGAGAGAGTGACTTCACCCGCGGTGGCATCGTCGTCGTCTCGGGCAGCGTA