| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF011F15 | Sequence | 255 | 002469 (5) | 739 | 008465 (5) | ref|XP_009587659.1| | 7e-101 | PREDICTED: protein trichome birefringence-like 36 [Nicotiana tomentosiformis] | |||
| JMSF011L23 | Sequence | 272 | 002469 (5) | 736 | 008465 (5) | ref|XP_009587659.1| | 1e-97 | PREDICTED: protein trichome birefringence-like 36 [Nicotiana tomentosiformis] | |||
| JMSF015O20 | Sequence | 247 | 002469 (5) | emb|CDO99906.1| | 6e-06 | unnamed protein product [Coffea canephora] | 745 | 008465 (5) | ref|XP_009587659.1| | 3e-101 | PREDICTED: protein trichome birefringence-like 36 [Nicotiana tomentosiformis] |
| JMSF050G23 | Sequence | 621 | 002469 (5) | emb|CDO99906.1| | 7e-59 | unnamed protein product [Coffea canephora] | 702 | 008465 (5) | ref|XP_009587659.1| | 5e-93 | PREDICTED: protein trichome birefringence-like 36 [Nicotiana tomentosiformis] |
| JMSF050J02 | Sequence | 640 | 002469 (5) | emb|CDO99906.1| | 2e-91 | unnamed protein product [Coffea canephora] | 705 | 008465 (5) | ref|XP_009587659.1| | 2e-94 | PREDICTED: protein trichome birefringence-like 36 [Nicotiana tomentosiformis] |
This contig is upended
. : . : . : . : . : . :
rJMSF015O20+ GTGGAATGAAGCAAGGAGCAGAAAAC
rJMSF011F15+ GGAGCAGAAAAC
rJMSF011L23+ GGAGCAGAAACC
____________________________________________________________
consensus GTGGAATGAAGCAAGGAGCAGAAAAC
. : . : . : . : . : . :
rJMSF015O20+ AAGAGAATACTGCATCTTGATTTGATAGAAGAGAATGCAAGGTACTGGAGAGGCTCTGAT
rJMSF050J02+ GCATCTTGATTTGATAGAAGAGAATGCAAGGTACTGGAGAGGCTCTGAT
rJMSF050G23+ TGATTTGATAGAAGAGAATGCAAGGTACTGGAGAGGCTCTGAT
rJMSF011F15+ AAGAGAATACTGCATCTTGATTTGATAGAAGAGAATGCAAGGTACTGGAGAGGCTCTGAT
rJMSF011L23+ AAGAGAATACTGCATCTTGATTTGATAGAAGAGAATGCAAGGTACTGGAGAGGCTCTGAT
____________________________________________________________
consensus AAGAGAATACTGCATCTTGATTTGATAGAAGAGAATGCAAGGTACTGGAGAGGCTCTGAT
. : . : . : . : . : . :
rJMSF015O20+ GTGCTTGTGTTTGATTCAGCTCATTGGTGGACTCATTCTCAAAACCGGAGCTCGTGGGAT
rJMSF050J02+ GTGCTTGTGTTTGATTCAGCTCATTGGTGGACTCATTCTCAAAACCGGAGCTCGTGGGAT
rJMSF050G23+ GTGCTTGTGTTTGATTCAGCTCATTGGTGGACTCATTCTCAAAACCGGAGCTCGTGGGAT
rJMSF011F15+ GTGCTTGTGTTTGATTCAGCTCATTGGTGGACTCATTCTCAAAACCGGAGCTCGTGGGAT
rJMSF011L23+ GTGCTTGTGTTTGATTCAGCTCATTGGTGGACTCATTCTCAAAACCGGAGCTCGTGGGAT
____________________________________________________________
consensus GTGCTTGTGTTTGATTCAGCTCATTGGTGGACTCATTCTCAAAACCGGAGCTCGTGGGAT
. : . : . : . : . : . :
rJMSF015O20+ TATATTATGGAGGGTACCAATTTCTTCAGATATATGAACCCTATGGTTGCCTATGAGAAA
rJMSF050J02+ TATATTATGGAGGGTACCAATTTCTTCAGATATATGAACCCTATGGTTGCCTATGAGAAA
rJMSF050G23+ TATATTATGGAGGGTACCAATTTCTTCAGATATATGAACCCTATGGTTGCCTATGAGAAA
rJMSF011F15+ TATATTATGGAGGGTACCAATTTCTTCAGATATATGAACCCTATGGTTGCCTATGAGAAA
rJMSF011L23+ TATATTATGGAGGGTACCAATTTCTTCAGATATATGAACCCTATGGTTGCCTATGAGAAA
____________________________________________________________
consensus TATATTATGGAGGGTACCAATTTCTTCAGATATATGAACCCTATGGTTGCCTATGAGAAA
. : . : . : . : . : . :
rJMSF015O20+ GGGCTCATGACATGGGCTAAATGGATAGACTTAAACGTCGATCCCAGGAAAAGCCGAGTC
rJMSF050J02+ GGGCTCATGACATGGGCTAAATGGATAGACTTAAACGTCGATCCCAGGAAAAGCCGAGTC
rJMSF050G23+ GGGCTCATGACATGGGCTAAATGGATAGACTTAAACGTCGATCCCAGGAAAAGCCGAGTC
rJMSF011F15+ GGGCTCATGACATGGGCTAAATGGATAGACTTAAACGTCGATCCCAGGAAAAGCCGAGTC
rJMSF011L23+ GGGCTCATGACATGGGCTAAATGGATAGACTTAAACGTCGATCCCAGGAAAAGCCGAGTC
____________________________________________________________
consensus GGGCTCATGACATGGGCTAAATGGATAGACTTAAACGTCGATCCCAGGAAAAGCCGAGTC
. : . : . : . : . : . :
rJMSF015O20+ TTCTTCAGAAGCATGTCGCCTAAGCATAACAGAGAAAACGGGTGGAAATGTTTCAACGAG
rJMSF050J02+ TTCTTCAGAAGCATGTCGCCTAAGCATAACAGAGAAAACGGGTGGAAATGTTTCAACGAG
rJMSF050G23+ TTCTTCAGAAGCATGTCGCCTAAGCATAACAGAGAAAACGGGTGGAAATGTTTCAACGAG
rJMSF011F15+ TTCTTCAGAAGCATGTCGCCTAAGCATAACAGAGAAAACGGGTGGAAATGTTTCAACGAG
rJMSF011L23+ TTCTTCAGAAGCATGTCGCCTAAGCATAACAGAGAAAACGGGTGGAAATGTTTCAACGAG
____________________________________________________________
consensus TTCTTCAGAAGCATGTCGCCTAAGCATAACAGAGAAAACGGGTGGAAATGTTTCAACGAG
. : . : . : . : . : . :
rJMSF015O20+ AGGGAGCCTCTGGAGCACTTTAGTCGCCCCCGAGTACCTCAACAGCTGGTGGTACTAAAA
rJMSF050J02+ AGGGAGCCTCTGGAGCACTTTAGTCGCCCCCGAGTACCTCAACAGCTGGTGGTACTAAAA
rJMSF050G23+ AGGGAGCCTCTGGAGCACTTTAGTCGCCCCCGAGTACCTCAACAGCTGGTGGTACTAAAA
rJMSF011F15+ AGGGAGCCTCTGGAGCACTTTAGTCGCCCCCGAGTACCTCAACAGCTGGTGGTACTAAAA
rJMSF011L23+ AGGGAGCCTCTGGAGCACTTTAGTCGCCCCCGAGTACCTCAACAGCTGGTGGTACTAAAA
____________________________________________________________
consensus AGGGAGCCTCTGGAGCACTTTAGTCGCCCCCGAGTACCTCAACAGCTGGTGGTACTAAAA
. : . : . : . : . : . :
rJMSF015O20+ CAGGTGCTGAGAAGGATGAACTTCCCGGTGTATTTGCAGGATATCAGTACAATGTCAGCG
rJMSF050J02+ CAGGTGCTGAGAAGGATGAACTTCCCGGTGTATTTGCAGGATATCAGTACAATGTCAGCG
rJMSF050G23+ CAGGTGCTGAGAAGGATGAACTTCCCGGTGTATTTGCAGGATATCAGTACAATGTCAGCG
rJMSF011F15+ CAGGTGCTGAGAAGGATGAACTTCCCGGTGTATTTGCAGGATATCAGTACAATGTCAGCG
rJMSF011L23+ CAGGTGCTGAGAAGGATGAACTTCCCGGTGTATTTGCAGGATATCAGTACAATGTCAGCG
____________________________________________________________
consensus CAGGTGCTGAGAAGGATGAACTTCCCGGTGTATTTGCAGGATATCAGTACAATGTCAGCG
. : . : . : . : . : . :
rJMSF015O20+ TTTAGAAGAGACGCTCATCCCTCCGTTTATGGTAAAGTCGTAGGTCAAGAAGAGAAGCAG
rJMSF050J02+ TTTAGAAGAGACGCTCATCCCTCCGTTTATGGTAAAGTCGTAGGTCAAGAAGAGAAGCAG
rJMSF050G23+ TTTAGAAGAGACGCTCATCCCTCCGTTTATGGTAAAGTCGTAGGTCAAGAAGAGAAGCAG
rJMSF011F15+ TTTAGAAGAGACGCTCATCCCTCCGTTTATGGTAAAGTCGTAGGTCAAGAAGAGAAGCAG
rJMSF011L23+ TTTAGAAGAGACGCTCATCCCTCCGTTTGTGGTAAAGTCGTAGGTCAAGAAGAGAAGCAG
____________________________________________________________
consensus TTTAGAAGAGACGCTCATCCCTCCGTTTATGGTAAAGTCGTAGGTCAAGAAGAGAAGCAG
. : . : . : . : . : . :
rJMSF015O20+ CACCTCCGAGGCTACAAATCCGATTGTAGCCACTGGTGCCTTCCTGGCGTGCCCGATATT
rJMSF050J02+ CACCTCCGAGGCTACAAATCCGATTGTAGCCACTGGTGCCTTCCTGGCGTGCCCGATATT
rJMSF050G23+ CACCTCCGAGGCTACAAATCCGATTGTAGCCACTGGTGCCTTCCTGGCGTGCCCGATATT
rJMSF011F15+ CACCTCCGAGGCTACAAATCCGATTGTAGCCACTGGTGCCTTCCTGGCGTGCCCGATATT
rJMSF011L23+ CACCTCCGAGGCTACAAATCCGATTGTAGCCACTGGTGCCTTCCTGGCGTGCCCGATATT
____________________________________________________________
consensus CACCTCCGAGGCTACAAATCCGATTGTAGCCACTGGTGCCTTCCTGGCGTGCCCGATATT
. : . : . : . : . : . :
rJMSF015O20+ TGGAATGAGATGTTGAATGCCATGCTCTAGAGCCTTAGCTTGTCTCTAAGTGTGAAAGGT
rJMSF050J02+ TGGAATGAGATGTTGAATGCCATGCTCTAGAGCCTTAGCTTGTCTCTAAGTGTGAAAGGT
rJMSF050G23+ TGGAATGAGATGTTGAATGCCATGCTCTAGAGCCTTAGCTTGTCTCTAAGTGTGAAAGGT
rJMSF011F15+ TGGAATGAGATGTTGAATGCCATGCTCTAGAGCCTTAGCTTGTCTCTAAGTGTGAAAGGT
rJMSF011L23+ TGGAATGAGATGTTGAATGCCATGCTCTAGAGCCTTAGCTTGTCTCTAAGTGTGAAAGGT
____________________________________________________________
consensus TGGAATGAGATGTTGAATGCCATGCTCTAGAGCCTTAGCTTGTCTCTAAGTGTGAAAGGT
. : . : . : . : . : . :
rJMSF015O20+ GTCTCATGCTGTATAAGCTCTAGGGATGGGTCATTGAGATCTCTTGTCTCAAAAGATCTG
rJMSF050J02+ GTCTCATGCTGTATAAGCTCTAGGGATGGGTCATTGAGATCTCTTGTCTCAAAAGATCTG
rJMSF050G23+ GTCTCATGCTGTATAAGCTCTAGGGATGGGTCATTGAGATCTCTTGTCTCAAAAGATCTG
rJMSF011F15+ GTCTCATGCTGTATAAGCTCTAGGGATGGGTCATTGAGATCTCTTGTCTCAAAAGATCTG
rJMSF011L23+ GTCTCATGCTGTATAAGCTCTAGGGATGGGTCATTGAGATCTCTTGTCTCAAAAGATCTG
____________________________________________________________
consensus GTCTCATGCTGTATAAGCTCTAGGGATGGGTCATTGAGATCTCTTGTCTCAAAAGATCTG
. : . : . : . : . : . :
rJMSF015O20+ TTGAGTTTCTTTTCCCTTTTCTCTTTCTTTCTTTGTGAAAAGTTGTTGAC
rJMSF050J02+ TTGAGTTTCTTTTCCCTTTTCTCTTTCTTTCTTTGTGAAAAGTTGT
rJMSF050G23+ TTGAGTTTCTTTTCCCTTTTCTCTTTCTTTCTTTGTGAAAAGTTGTTGAC
rJMSF011F15+ TTGAGTTTCTTTTCCCTTTTCTCTTTCTTTCTTTGTGAAAAGTTGTTGAC
rJMSF011L23+ TTGAGTTTCTTTTCCCTTTTCTCTTTCTTTCTTTGTGAAAAGTTGTTGACCTTGAGTTAA
____________________________________________________________
consensus TTGAGTTTCTTTTCCCTTTTCTCTTTCTTTCTTTGTGAAAAGTTGTTGACCTTGAGTTAA