Contig 008463:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF013B09Sequence459007389 (5)ref|XP_009797863.1|3e-20PREDICTED: zinc-finger homeodomain protein 9-like [Nicotiana sylvestris]362008463 (10)
JMFF019C09Sequence103008463 (10)
JMFF026D03Sequence532007389 (5)ref|XP_009797863.1|1e-17PREDICTED: zinc-finger homeodomain protein 9-like [Nicotiana sylvestris]588008463 (10)ref|XP_009620291.1|2e-30PREDICTED: zinc-finger homeodomain protein 9-like [Nicotiana tomentosiformis]
JMFF035F17Sequence541007389 (5)ref|XP_009797863.1|7e-35PREDICTED: zinc-finger homeodomain protein 9-like [Nicotiana sylvestris]654008463 (10)ref|XP_009620291.1|3e-30PREDICTED: zinc-finger homeodomain protein 9-like [Nicotiana tomentosiformis]
JMSF008G08Sequence424007389 (5)667008463 (10)emb|CDP02232.1|8e-26unnamed protein product [Coffea canephora]
JMSF010O12Sequence229008463 (10)emb|CBI22215.3|8e-16unnamed protein product [Vitis vinifera]701008463 (10)ref|XP_009620291.1|2e-14PREDICTED: zinc-finger homeodomain protein 9-like [Nicotiana tomentosiformis]
JMSF011O12Sequence245008463 (10)gb|KJB75739.1|1e-15hypothetical protein B456_012G054300 [Gossypium raimondii]684008463 (10)gb|KJB75739.1|1e-10hypothetical protein B456_012G054300 [Gossypium raimondii]
JMSF043C07Sequence792007389 (5)ref|XP_009797863.1|1e-40PREDICTED: zinc-finger homeodomain protein 9-like [Nicotiana sylvestris]631008463 (10)emb|CDP02232.1|3e-21unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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rJMFF026D03+                                               TCATCCATCCACCCATCACCACA
rJMFF035F17+                                            CCNTCATCCATCCACCCATCACCACA
rJMSF008G08+                                                                    CA
                      ____________________________________________________________
consensus                                               CCNTCATCCATCCACCCATCACCACA
 
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rJMFF026D03+          CATGAAAGGGAGAAAGCGGTTCCGAACAAAATTCACCCAAGATCAGAAAGGTAAAATGCT
rJMFF035F17+          CATGAAAGGGAGAAAGCGGTTCCGAACAAAATTCACCCAAGATCAGAAAGGTAAAATGCT
rJMSF008G08+          CATGAAAGGGAGAAAGNGGTTCCGAACAAAATTCACCCAAGTTCAGAAAGGTAAAATGNT
rJMSF043C07+                                                        AAAGGTAAAATGCT
                      ____________________________________________________________
consensus             CATGAAAGGGAGAAAGCGGTTCCGAACAAAATTCACCCAAGATCAGAAAGGTAAAATGCT
 
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rJMFF026D03+          GGATTTCGCGGAGAGGATCGGGTGGAAGATTCAGAAGAGAGACGAAGAACTGATCAACGA
rJMFF035F17+          GGATTTCGCGGAGAGGATCGGGTGGAAGATTCAGAAGAGAGACGAAGAACTGATCAACGA
rJMSF008G08+          GGATTTCGCGGAGAGGATCGGGTGGAAGATTCAGAAGAGNGACGAAGAACTGATCAACGA
JMSF010O12-                              GGGTGGAAGATTCAGAAGAGAGACGAAGAACTGATCAACGA
rJMSF043C07+          GGATTTCGCGGAGAGGATCGGGTGGAAGATTCAGAAGAGAGACGAAGAACTGATCAACGA
rJMSF011O12+                                     GATTCAGAAGAGAGACGAAGAACTGATCAACGA
JMSF011O12-                              GGGTGGAAGATTCAGAAGAGAGACGAAGAACTGATCAACGA
rJMSF010O12+                             GGGTGGAAGATTCAGAAGAGAGACGAAGAACTGATCAACGA
                      ____________________________________________________________
consensus             GGATTTCGCGGAGAGGATCGGGTGGAAGATTCAGAAGAGAGACGAAGAACTGATCAACGA
 
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rJMFF026D03+          TTTCTGCCGTGAAATTGGAGTCGAGAGAGGAGTTTTAAAGGTCTGGATGCATAACAACAA
rJMFF035F17+          TTTCTGCCGTGAAATTGGAGTCGAGAGAGGAGTTTTAAAGGTCTGGATGCATAACAACAA
rJMSF008G08+          TTTCTGCCGTGAAATTGGAGTCGAGAGAGGAGTTTTAAAGGTCTGGATGCATAACAACAA
JMSF010O12-           TTTCTGCCGTGAAATTGGAGTCGAGAGAGGAGTTTTAAAGGTCTGGATGCATAACAACAA
rJMSF043C07+          TTTCTGCCGTGAAATTGGAGTCGAGAGAGGAGTTTTAAAGGTCTGGATGCATAACAACAA
rJMSF011O12+          TTTNTGCCGTGAAATTGGAGTCGAGAGAGGAGTTTTAAAGGTCTGGATGCATAACAACAA
JMSF011O12-           TTTCTGCCGTGAAATTGGAGTCGAGAGAGGAGTTTTAAAGGTCTGGATGCATAACAACAA
rJMSF010O12+          TTTCTGCCGTGAAATTGGAGTCGAGAGAGGAGTTTTAAAGGTCTGGATGCATAACAACAA
                      ____________________________________________________________
consensus             TTTCTGCCGTGAAATTGGAGTCGAGAGAGGAGTTTTAAAGGTCTGGATGCATAACAACAA
 
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rJMFF013B09+                      CAAGAGAGATAACATCANCACCACCCCCGCAGCCGCCGCCGCCGCCGA
rJMFF026D03+          GAACACTGTCGGCAAGAGAGATAACATCACCACCACCCCCGCAGCCGCCGCCGCCGCCGA
rJMFF035F17+          GAACACTGTCGGCAAGAGAGATAACATCACCACCACCCCCGCAGCCGCCGCCGCCGCCGA
rJMSF008G08+          GAACACNGTNGGCAAGAGAGATAACATCNCCACCACCCCCGCAGCCGCCGCCGCCGCCGA
JMSF010O12-           GAACACTGTCGGCAAGATAGATAACATCACCACCACCCCCGCAGCCGCCGCCGCCGCCGA
rJMSF043C07+          GAACACTGTCGGCAAGAGAGATAACATCACCACCACCCCCGCAGCCGCCGCCGCCGCCGA
rJMSF011O12+          GAACACTGTCGGCAAGATAGATAACATCACCACCACCCCCGCAGCCGCCGCCGCCGCCGA
JMSF011O12-           GAACACTGTCGGCAAGATAGATAACATCACCACCACCCCCGCAGCCGCCGCCGCCGCCGA
rJMSF010O12+          GAACACTGTCGGCAAGATAGATAACATCACCACCACCCCCGCAGCCGCCGCCGCCGCCGA
                      ____________________________________________________________
consensus             GAACACTGTCGGCAAGATAGATAACATCACCACCACCCCCGCAGCCGCCGCCGCCGCCGA
 
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rJMFF013B09+          TAACGGAAATGCTCACAGTCTCGGTTTNGACATCGGCCGCGTAAACTCCGCCCCACTCAC
rJMFF026D03+          TAACGGAAATGCTCACAGTCTCGGTTTCGACATCGGCCGCGTAAACTCCGCCCCACTCAC
rJMFF035F17+          TAACGGAAATGCTCACAGTCTCGGTTTCGACATCGGCCGCGTAAACTCCGCCCCACTCAC
rJMSF008G08+          TAACGGAAATGCTCACAGTNTNGGTTTTGACATNGGCCGCGTAAACTCCGCCCCANTCAC
JMSF010O12-           TAACGGAAATGCTCACAGTCTCGGTTTCGACATCGGCCGCGTAAACTCCGCCCCACTCAC
rJMSF043C07+          TAACGGAAATGCTCACAGTCTCGGTTTCGACATCGGCCGCGTAAACTCCGCCCCACTCAC
rJMSF011O12+          TAACGGAAATGCTCACAGTCTCGGTTTCGACATCGGCCGCGTAAANTCCGCCCCACTCAC
JMSF011O12-           TAACGGAAATGCTCACAGTCTCGGTTTCGACATCGGCCGCGTAAACTCCGCCCCACTCAC
rJMSF010O12+          TAACGGAAATGCTCACAGTCTCGGTTTCGACATCGGCCGCGTAAACTCCGCCCCACTCAC
                      ____________________________________________________________
consensus             TAACGGAAATGCTCACAGTCTCGGTTTCGACATCGGCCGCGTAAACTCCGCCCCACTCAC
 
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rJMFF013B09+          CTCCGACTTCAACCTCCGTCCAGAAAGCAACAACAACGGCAGCCATAGCCAAAACCAGTA
rJMFF026D03+          CTCCGACTTCAACCTCCGTCCAGAAAGCAACAACAACGGCAGCCATAGCCAAAACCACTA
rJMFF035F17+          CTCCGACTTCAACCTCCGTCCAGAAAGCAACAACAACGGCAGCCATAGCCAAAACCACTA
rJMSF008G08+          CTCCGACTTCAACCTCCGTCCAGAAAGCAACAACAACGGCAGCCATAGCCAAAACCACTA
JMSF010O12-           CTCCGACT                                                    
rJMSF043C07+          CTCCGACTTCAACCTCCGTCCAGAAAGCAACAACAACGGCAGCCATAGCCAAAACCACTA
rJMSF011O12+          CTCCGACTTCAACCTCCGTCCAGAAAGCAACAACAACGGCAGCCATAGCCAAAACCACTA
JMSF011O12-           CTCCGACTTCAACCTCCGTCCAGA                                    
rJMSF010O12+          CTCCGACTTCAACCTCCGTCCAGAAAGCAACAACAACGGCAGCCATAGCCAAAACCACTA
                      ____________________________________________________________
consensus             CTCCGACTTCAACCTCCGTCCAGAAAGCAACAACAACGGCAGCCATAGCCAAAACCACTA
 
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rJMFF013B09+          CGCCCTCCACAGCGGCGACGTTCTCGCCGCCAATGGGTNGTCGTCTTCTTCNTGATCCGG
rJMFF019C09+                           ACGTTCTCGCCGCCAANGGGTCGTCGTCTTCTTCNNGATCCGG
rJMFF026D03+          CGCCCTCCACAGCGGCGACGTTCTCGCCGCCAATGGGTCGTCGTCTTCTTCCTGATCCGG
rJMFF035F17+          CGCCCTCCACAGCGGCGACGTTCTCGCCGCCAATGGGTCGTCGTCTTCTTCCTGATCCGG
rJMSF008G08+          CGCCCTCCACAGCGGNGACGTTNTCGCCGCCAATGGGTCGTCGTCTTNTTCCTGATCCGG
rJMSF043C07+          CGCCCTCCACAGCGGCGACGTTCTCGCCGCCAATGGGTCGTCGTCTTCTTCCTGATCCGG
rJMSF011O12+          CGCCCTCCACAGCGGCGACGTTCTCGCCGCCAANGGGTCGTCGTCTTNTTCCTGATCCGG
rJMSF010O12+          CGCCCTCCACAGCGGCGACGTTCTCGCCGCCAATGGGTCGTCGTCTTCTTCCTGATCCGG
                      ____________________________________________________________
consensus             CGCCCTCCACAGCGGCGACGTTCTCGCCGCCAATGGGTCGTCGTCTTCTTCCTGATCCGG
 
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rJMFF013B09+          CACGTGGAAGGGGAGAATAAAAAAGATTTTAGAATCTGCGGCAAAATNTGCAGGAAACAC
rJMFF019C09+          CACGTGGAAGGGGAGAATAAAAAAGATTTTAGAATNTGCGGCAAAATNTGCAGGAAACAC
rJMFF026D03+          CACGTGGAAGGGGAGAATAAAAAAGATTTTAGAATCTGCGGCAAAATTTGCAGGAAACAC
rJMFF035F17+          CACGTGGAAGGGGAGAATAAAAAAGATTTTAGAATCTGCGGCAAAATTTGCAGGAAACAC
rJMSF008G08+          CACGTGGAAGGGGAGAATAAAAAAGATTTTAGAATTTGCGGCAAAATTTGCAGGAAACNC
rJMSF043C07+          CACGTGGAAGGGGAGAATAAAAAAGATTTTAGAATNTGCGGCAAAATTTGCAGGAAACAC
rJMSF011O12+          CACGTGGAAGGGGAGAATAAAAAAGATTTTAGAATCTGCGGCAAAATTTGCAGGAAACAC
rJMSF010O12+          CACGTGGAAGGGGAGAATAAAAAAGATTTTAGAATCTGCGGCAAAATTTGCAGGAAACAC
                      ____________________________________________________________
consensus             CACGTGGAAGGGGAGAATAAAAAAGATTTTAGAATCTGCGGCAAAATTTGCAGGAAACAC
 
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rJMFF013B09+          AACCAACTATGGTGAGGCCAGTACTGTTCTATCNTAGCTACTGCTTATTCACAAAGAGCC
rJMFF026D03+          AACCAACTATGGTGAGGCCAGTACTGTTCTATCTTAGCTACTGCTTATTCACAAAGAGCC
rJMFF035F17+          AACCAACTATGGTGAGGCCAGTACTGTTCTATCTTAGCTACTGCTTATTCACAAAGAGCC
rJMSF008G08+          AACCAACTATGGNGAGGCCAGTACTGTTCTATCTTAGCTANTGCTTATTCNCAAAGAGCC
rJMSF043C07+          AACCAACTATGGTGAGGCCAGTACTGTTCTATCTTAGCTACTGCTTATTCACAAAGAGCC
rJMSF011O12+          AACCAACTATGGTGAGGCCAGTACTGTTCTATCTTAGCTACTGCTTATTCACAAAGAGCC
rJMSF010O12+          AACCAACTATGGTGAGGCCAGTACTGTTCTATCTTAGCTACTGCTTATTCACAAAGAGCC
                      ____________________________________________________________
consensus             AACCAACTATGGTGAGGCCAGTACTGTTCTATCTTAGCTACTGCTTATTCACAAAGAGCC
 
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rJMFF013B09+          TATTTTAGATCT                                                
rJMFF026D03+          TATTTTAGATCTTCTGTTTCGAC                                     
rJMFF035F17+          TATTTTAGATCTTCTGTTTCGACTGTTCTTAATGATTAGTGCTCTGATCTGAGGAAAAAT
rJMSF008G08+          TATTTTAGATNTTNTGNTTCGACTGTTTTTAATGATTAGTGCTNTGATNNGAGGAAAAAT
rJMSF043C07+          TATTTTAGATCTTCTGTTTCGACTGTTCTTAATGATTAGTGCTCTGATCTGAGGAAAAAT
rJMSF011O12+          TATTTTAGATCTTCTGTTTCGACTGTTCTTAATGATTAGTGCTCTGATCTGAGGAAAAAT
rJMSF010O12+          TATTTTAGATCTTCTGTTTCGACTGTTCTTAATGATTAGTGCTCTGATCTGAGGAAAAAT
                      ____________________________________________________________
consensus             TATTTTAGATCTTCTGTTTCGACTGTTCTTAATGATTAGTGCTCTGATCTGAGGAAAAAT
 
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rJMFF035F17+          CTGCAGAACATCGTTCTGATGAGCAATT                                
rJMSF008G08+          NTGCAGAACATCGTTNTGATGAGCAATTTAATNNGTTTATTTTTCATTCTCATCATCCTG
rJMSF043C07+          CTGCAGAACATCGTTCTGATGAGCAATTTAATTTGTTTATTTTTCATTCTCATCATCCTG
rJMSF011O12+          NTGCAGAACATCGTTNTGATGAGCAATTTAATTTGTTTATTTTTCATTCTCATCATCCTG
rJMSF010O12+          CTGCAGAACATCGTTCTGATGAGCAATTTAATTTGTTTATTTTTCATTCTCATCATCCTG
                      ____________________________________________________________
consensus             CTGCAGAACATCGTTCTGATGAGCAATTTAATTTGTTTATTTTTCATTCTCATCATCCTG
 
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rJMSF008G08+          ACCTG                                                       
rJMSF043C07+          ACCTGTAAATTATAACC                                           
rJMSF011O12+          ACCTGTAAATTATAACCTTAATTAGGATCTCCAAAAAAAAATTGAGTCTTTTCCCATTTT
rJMSF010O12+          ACCTGTAAATTATAACCTTAATTAGGATCTCCAAAAAAAAATTGAGTCTTTTCCCATTTT
                      ____________________________________________________________
consensus             ACCTGTAAATTATAACCTTAATTAGGATCTCCAAAAAAAAATTGAGTCTTTTCCCATTTT
 
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rJMSF011O12+          CCTTTGTTTCTTGAATCTTGAATCCTCCCTCCCCTTCCACCATT                
rJMSF010O12+          CCTTTGTTTCTTGAATCTTGAATCCTCCCTCCCCTTCCACCATTCTTTCTCCATTGATGG
                      ____________________________________________________________
consensus             CCTTTGTTTCTTGAATCTTGAATCCTCCCTCCCCTTCCACCATTCTTTCTCCATTGATGG