Contig 008458:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF052H19+                                                          AANCAGATAAGG
                      ____________________________________________________________
consensus                                                             AANCAGATAAGG
 
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rJMSF052H19+          TGATGGTCCAGAGGCAGAAGACGGCCTTCCCTCCAAATTTTGTTCACTCACTCGACGGTT
                      ____________________________________________________________
consensus             TGATGGTCCAGAGGCAGAAGACGGCCTTCCCTCCAAATTTTGTTCACTCACTCGACGGTT
 
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rJMSF052H19+          CCCATATGATGATGACTGCCATTGCATGCAAAGAAGCGGGCTTAAATTTTGCAGGTGTGC
rJMSF010C03+                                   ATGCAAAGAAGCGGGCTTAAATTTTGCAGGTGTGC
                      ____________________________________________________________
consensus             CCCATATGATGATGACTGCCATTGCATGCAAAGAAGCGGGCTTAAATTTTGCAGGTGTGC
 
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rJMSF052H19+          ATGATTCGTACTGGACTCATGCATCTGATGTTGATCAAATGAATAGAATTCTGAGGGAAA
rJMSF010C03+          ATGATTCGTACTGGACTCATGCATCTGATGTTGATCAAATGAATAGAATTCTGAGGGAAA
                      ____________________________________________________________
consensus             ATGATTCGTACTGGACTCATGCATCTGATGTTGATCAAATGAATAGAATTCTGAGGGAAA
 
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rJMSF052H19+          AGTTTGTCGAACTCTATGAAGCACCAATACTCGAAAATCTATCAGAAAGTTTTCAAAAGT
rJMSF010C03+          AGTTTGTCGAACTCTATGAAGCACCAATACTCGAAAATCTATCAGAAAGTTTTCAAAAGT
                      ____________________________________________________________
consensus             AGTTTGTCGAACTCTATGAAGCACCAATACTCGAAAATCTATCAGAAAGTTTTCAAAAGT
 
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rJMSF052H19+          CATTCCCTAAACTACGATTCCCTCCCTTGCCTGAGCGGGGTGATTTTGACTTGAGAGAAG
rJMSF010C03+          CATTCCCTAAACTACGATTCCCTCCCTTGCCTGAGCGGGGTGATTTTGACTTGAGAGAAG
                      ____________________________________________________________
consensus             CATTCCCTAAACTACGATTCCCTCCCTTGCCTGAGCGGGGTGATTTTGACTTGAGAGAAG
 
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rJMSF052H19+          TTCTGGATTCTCCGTACTTTTTCAACTAGATCAACGGTCATTCATTTTGGAAATTTTGGG
rJMSF010C03+          TTCTGGATTCTCCGTACTTTTTCAACTAGATCAACGGTCATTCATTTTGGAAATTTTGGG
                      ____________________________________________________________
consensus             TTCTGGATTCTCCGTACTTTTTCAACTAGATCAACGGTCATTCATTTTGGAAATTTTGGG
 
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rJMSF052H19+          CTACCATAAGAAAGTTTGGAATAAGATATACATCGCCCACCAACTCCGTGGTCAAAATTG
rJMSF010C03+          CTACCATAAGAAAGTTTGGAATAAGATATACATCGCCCACCAACTCCGTGGTCAAAATGG
                      ____________________________________________________________
consensus             CTACCATAAGAAAGTTTGGAATAAGATATACATCGCCCACCAACTCCGTGGTCAAAATTG
 
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rJMSF052H19+          CCATTGCAATCGAGGTGTGTAGCCAATCATTTGACTGTGCTCCATAGATGACCCTTCAAC
rJMSF010C03+          CCATTGCAATCGAGGTGTGTAGCCAATCATTTGACTGTGCTCCATAGATGACCCTTCAAC
                      ____________________________________________________________
consensus             CCATTGCAATCGAGGTGTGTAGCCAATCATTTGACTGTGCTCCATAGATGACCCTTCAAC
 
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rJMSF052H19+          ATGAGCCCATTGATCATCTCGAGCTATAGACTTAAAGCACGCTAACTATACAGGAAGTTT
rJMSF010C03+          ATGAGCCCATTGATCATCTCGAGCTATAGACTTAAAGCACGCTAACTATACAGGAAGTTT
                      ____________________________________________________________
consensus             ATGAGCCCATTGATCATCTCGAGCTATAGACTTAAAGCACGCTAACTATACAGGAAGTTT
 
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rJMSF052H19+          GGAATGTGAAGACGACACGACTAATCTTAAACCTGTCATACATTTGAAAGCTGGGGAGAC
rJMSF010C03+          GGAATGTGAAGACGACACGACTAATCTTAAACCTGTCATACATTTGAAAGCTGGGGAGAC
                      ____________________________________________________________
consensus             GGAATGTGAAGACGACACGACTAATCTTAAACCTGTCATACATTTGAAAGCTGGGGAGAC
 
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rJMSF052H19+          ATCTCCAATGTCGTTCCTATACGCATATAATGCAGTGAGGAGAAGCATTTGCTTATTTTG
rJMSF010C03+          ATCTCCAATGTCGTTCCTATACGCATATAATGCAGTGAGGAGAAGCATTTGCTTATTTTG
                      ____________________________________________________________
consensus             ATCTCCAATGTCGTTCCTATACGCATATAATGCAGTGAGGAGAAGCATTTGCTTATTTTG
 
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rJMSF052H19+          AGTCTGGAAACCTTGTATAGTCATATGGATAAAAACACACTGCTGTGTGTATATATTTCA
rJMSF010C03+          AGTCTGGAAACCTTGTATAGTCATATGGATAAAAACACACTGCTGTGTGTATATATTTCA
                      ____________________________________________________________
consensus             AGTCTGGAAACCTTGTATAGTCATATGGATAAAAACACACTGCTGTGTGTATATATTTCA
 
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rJMSF052H19+          GGTTTTTATTTTTTCTTTTCCAATTTAGTTTCACATTTTCACCTGATTTTTTTTTAATGT
rJMSF010C03+          GGTTTTTATTTTTTCTTTTCCAATTTAGTTTCACATTTTCACCTGATTTTTTTTTAATGT
                      ____________________________________________________________
consensus             GGTTTTTATTTTTTCTTTTCCAATTTAGTTTCACATTTTCACCTGATTTTTTTTTAATGT
 
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rJMSF052H19+          ANATAGCANCCAGCTGATAG                                        
rJMSF010C03+          ANATAGCANCCAGCTGATAGTGTGATAATAGTCATCCATATNCAATTTGNATCTCTGATA
                      ____________________________________________________________
consensus             ANATAGCANCCAGCTGATAGTGTGATAATAGTCATCCATATNCAATTTGNATCTCTGATA