Contig 008457:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF010B19Sequence283005058 (2)ref|XP_009771401.1|3e-12PREDICTED: transcription factor HBP-1a-like [Nicotiana sylvestris]496008457 (2)
JMSF019O20Sequence254005058 (2)722008457 (2)ref|XP_011082310.1|9e-55PREDICTED: transcription factor HBP-1a-like isoform X2 [Sesamum indicum]

Alignment

This contig is upended


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rJMSF019O20+                                        TCCGAGGCAAGGTACCTTTTGCTTCAGTTG
                      ____________________________________________________________
consensus                                           TCCGAGGCAAGGTACCTTTTGCTTCAGTTG
 
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rJMSF019O20+          CTGGTGGAATGGTCACTGCTGGATCNCGGGAGAGTGTTCAATCGCAGCTTTGGCCTCAGG
                      ____________________________________________________________
consensus             CTGGTGGAATGGTCACTGCTGGATCNCGGGAGAGTGTTCAATCGCAGCTTTGGCCTCAGG
 
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rJMSF019O20+          ATGAAAGGGAGGTCAAGAGGCAGAGAAGAAAGCAATCCAATAGGGAATCAGCTCGTCGTT
                      ____________________________________________________________
consensus             ATGAAAGGGAGGTCAAGAGGCAGAGAAGAAAGCAATCCAATAGGGAATCAGCTCGTCGTT
 
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rJMSF019O20+          CCNGGTTGCGCAAGCNGGCTGAGTGTGAAGAACTTGCTCAGCGTGCTGAAGCCTTAAAGG
                      ____________________________________________________________
consensus             CCNGGTTGCGCAAGCNGGCTGAGTGTGAAGAACTTGCTCAGCGTGCTGAAGCCTTAAAGG
 
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rJMSF019O20+          AAGAAAATGCCTCTCTCAGAGCTGAAGTGAGTCGCCTTAGGAGTGAGTATGATCAGCTTC
rJMSF010B19+                                                      GAGTATGATCNGCTTN
                      ____________________________________________________________
consensus             AAGAAAATGCCTCTCTCAGAGCTGAAGTGAGTCGCCTTAGGAGTGAGTATGATCAGCTTC
 
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rJMSF019O20+          TTGCTCAAAATGCATCTCTTAAGGAGAGGCTTGGTGAATCNTCCGGGAATGAAGATCCGA
rJMSF010B19+          TTGCTCNAAANGCNTCTNTTAAGGNGNGGCNTGGNGAATCNTCCNGGAANGAAGATCCGN
                      ____________________________________________________________
consensus             TTGCTCAAAATGCATCTCTTAAGGAGAGGCTTGGTGAATCNTCCGGGAATGAAGATCCGA
 
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rJMSF019O20+          GGCTCNGTAAGAACGAACAACTTCTCAGCAATGATGCTCCNCNTCCATCGGAAGCNGTGC
rJMSF010B19+          GGCTCNGTAAGAACGAACNACTTNTCNGCNANGATGCTCCNCNTCCNTNGGAAGCNGNGC
                      ____________________________________________________________
consensus             GGCTCNGTAAGAACGAACAACTTCTCAGCAATGATGCTCCNCNTCCATCGGAAGCNGTGC
 
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rJMSF019O20+          CCNTGGAGGGTAATCAATGAAGTTGCGGCTGTATTGTTGCNGATTGATCTTTAGGGGTTT
rJMSF010B19+          CCCTGGNGGGTAATCNANGAAGTTGCGGCNGTATTGTTGCNGATTGATCNTTAGGGGNTT
                      ____________________________________________________________
consensus             CCCTGGAGGGTAATCAATGAAGTTGCGGCTGTATTGTTGCNGATTGATCTTTAGGGGTTT
 
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rJMSF019O20+          AACCTAACCNCTTAGTAGTAAAACTCGGTTTTTAATTTCAAAATTACCTTAGTT-AAAAA
rJMSF010B19+          AACCNAACCCCTTAGTAGTAAAACTCGGTTTTTAATTTCAAAATTACCTTAGTTAAAAAA
                      ____________________________________________________________
consensus             AACCTAACCCCTTAGTAGTAAAACTCGGTTTTTAATTTCAAAATTACCTTAGTTAAAAAA
 
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rJMSF019O20+          AAAAAGAAAATTCTGCAGCTGACCATTCTGGTGTCAGGCGGTATTAGTAAAATATTGTCC
rJMSF010B19+          AAAAAGAAAATTCTGCAGCTGACCATTCTGGTGTCAGGCGGTATTAGTAAAATATTGTCC
                      ____________________________________________________________
consensus             AAAAAGAAAATTCTGCAGCTGACCATTCTGGTGTCAGGCGGTATTAGTAAAATATTGTCC
 
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rJMSF019O20+          ATTGTTTCTCAGTTGGCCGATCTTTTATGGTTGGAGGAACTTGGATGATATGTAGAGAGG
rJMSF010B19+          ATTGTTTCTCAGTTGGCCGATCTTTTATGGTTGGAGGAACTTGGATGATATGTAGAGAGG
                      ____________________________________________________________
consensus             ATTGTTTCTCAGTTGGCCGATCTTTTATGGTTGGAGGAACTTGGATGATATGTAGAGAGG
 
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rJMSF019O20+          GGTTGTAACCTTGTGTTGAATTGTGTTTAGATATAAGGGTGTTGTGTTGTGTCTATGAAT
rJMSF010B19+          GGTTGTAACCTTGTGTTGAATTGTGTTTAGATATAAGGGTGTTGTGTTGTGTCTATGAAT
                      ____________________________________________________________
consensus             GGTTGTAACCTTGTGTTGAATTGTGTTTAGATATAAGGGTGTTGTGTTGTGTCTATGAAT
 
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rJMSF019O20+          CTTCTTCAACTTATTTGTATGTAGGGAGATTGT                           
rJMSF010B19+          CTTCTTCAACTTATTTGTATGTAGGGAGATTGTTGATCCAGTTAGCCACATCTAGAGAAT
                      ____________________________________________________________
consensus             CTTCTTCAACTTATTTGTATGTAGGGAGATTGTTGATCCAGTTAGCCACATCTAGAGAAT