Contig 008454:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF007M07Sequence295008454 (5)ref|XP_009770048.1|4e-34PREDICTED: glutathione S-transferase U17-like [Nicotiana sylvestris]801008454 (5)ref|XP_009770048.1|1e-104PREDICTED: glutathione S-transferase U17-like [Nicotiana sylvestris]
JMSF009H03Sequence365008454 (5)ref|XP_009770048.1|9e-50PREDICTED: glutathione S-transferase U17-like [Nicotiana sylvestris]755008454 (5)ref|XP_009770048.1|7e-98PREDICTED: glutathione S-transferase U17-like [Nicotiana sylvestris]
JMSF053E15Sequence458019046ref|XP_004243945.1|7e-43PREDICTED: protein Brevis radix-like 4 [Solanum lycopersicum]811008454 (5)ref|XP_009770048.1|9e-105PREDICTED: glutathione S-transferase U17-like [Nicotiana sylvestris]

Alignment

This contig is upended


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rJMSF007M07+ TT
                      ____________________________________________________________
consensus TT
 
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JMSF007M07- TCAGCCATGGCGTCAGAGAGTGTGAAACTCTTGGG
JMSF009H03- TCAGCCATGGCGTCAGAGAGTGTGAAACTCTTGGG
rJMSF007M07+ TTAGCCCTTGNTTGCTTCATTNTGATCAGCCATGGCGTCAGAGAGTGTGAAACTCTTGGG
rJMSF053E15+ TCAGCCATGGCGTCAGAGAGTGTGAAACTCTTGGG
                      ____________________________________________________________
consensus TTAGCCCTTGNTTGCTTCATTNTGATCAGCCATGGCGTCAGAGAGTGTGAAACTCTTGGG
 
. : . : . : . : . : . :
JMSF007M07- TGCATGGGCGAGCCCTGTTGTGCTCCGCGCGCGCATCGCCTTCAACATCAAGTCTATAGC
JMSF009H03- TGCATGGGCGAGCCCTGTTGTGCTCCGCGCGCGCATCGCCTTCAACATCAAGTCTATAGC
rJMSF007M07+ TGCATGGGCGAGCCCTGTTGTGCTCCGCGCGCGCATCGCCTTCAACATCAAGTCTATAGC
rJMSF053E15+ TGCATGGGCGAGCCCTGTTGTGCTCCGCGCGCGCATCGCCTTCAACATCAAGTCTATAGC
rJMSF009H03+ CGCGCGCGCATCGCCTTCAACATCAAGTCTATAGC
                      ____________________________________________________________
consensus TGCATGGGCGAGCCCTGTTGTGCTCCGCGCGCGCATCGCCTTCAACATCAAGTCTATAGC
 
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JMSF007M07- TTACGAGTTCCTGGAGGAGAATTTTGCAGCCAAGAGCGACCTTCTACTCAAATCTAATCC
JMSF009H03- TTACGAGTTCCTGGAGGAGAATTTTGCAGCCAAGAGCGACCTTCTACTCAAATCTAATCC
rJMSF007M07+ TTACGAGTTCCTGGAGGAGAATTTTGCAGCCAAGAGCGACCTTCTACTCAAATCTAATCC
rJMSF053E15+ TTACGAGTTCCTGGAGGAGAATTTTGCAGCCAAGAGCGACCTTCTACTCAAATCTAATCC
rJMSF009H03+ TTACGAGTTCCTGGAGGAGAATTTTGCAGCCAAGAGCGACCTTCTACTCAAATCTAATCC
                      ____________________________________________________________
consensus TTACGAGTTCCTGGAGGAGAATTTTGCAGCCAAGAGCGACCTTCTACTCAAATCTAATCC
 
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JMSF007M07- AGTTTACAAGAAAGTCCCTGTTATCATTCACAACCAGAACCCCGTTTGCGAGTCCCTCAT
JMSF009H03- AGTTTACAAGAAAGTCCCTGTTATCATTCACAACCAGAACCCCGTTTGCGAGTCCCTCAT
rJMSF007M07+ AGTTTACAAGAAAGTCCCTGTTATCATTCACAACCAGAACCCCGTTTGCGAGTCCCTCAT
rJMSF053E15+ AGTTTACAAGAAAGTCCCTGTTATCATTCACAACCAGAACCCCGTTTGCGAGTCCCTCAT
rJMSF009H03+ AGTTTACAAGAAAGTCCCTGTTATCATTCACAACCAGAACCCCGTTTGCGAGTCCCTCAT
                      ____________________________________________________________
consensus AGTTTACAAGAAAGTCCCTGTTATCATTCACAACCAGAACCCCGTTTGCGAGTCCCTCAT
 
. : . : . : . : . : . :
JMSF007M07- AATCCTCCAGTATATTGATGANGTCTGGAATTCCGGTCCGGC
JMSF009H03- AATCCTCCAGTATATTGATGAGGTCTGGAATTCCGGTCCGGCAATCATGCCTGCCCATCC
rJMSF007M07+ AATCCTCCAGTATATTGATGAGGTCTGGAATTCCGGTCCGGCAATCATGCCTGCCCATCC
rJMSF053E15+ AATCCTCCAGTATATTGATGAGGTCTGGAATTCCGGTCCGGCAATCATGCCTGCCCATCC
rJMSF009H03+ AATCCTCCAGTATATTGATGAGGTCTGGAATTCCGGTCCGGCAATCATGCCTGCCCATCC
                      ____________________________________________________________
consensus AATCCTCCAGTATATTGATGAGGTCTGGAATTCCGGTCCGGCAATCATGCCTGCCCATCC
 
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JMSF009H03- TTATGACCGGGCCATCCACCGCTTCTGGGCCACTTATATTGATCATACGTGG
rJMSF007M07+ TTATGACCGGGCCATCCACCGCTTCTGGGCCACTTATATTGATCATACGTGGTTCCCAAA
rJMSF053E15+ TTATGACCGGGCCATCCACCGCTTCTGGGCCACTTATATTGATCATACGTGGTTCCCAAA
rJMSF009H03+ TTATGACCGGGCCATCCACCGCTTCTGGGCCACTTATATTGATCATACGTGGTTCCCAAA
                      ____________________________________________________________
consensus TTATGACCGGGCCATCCACCGCTTCTGGGCCACTTATATTGATCATACGTGGTTCCCAAA
 
. : . : . : . : . : . :
rJMSF007M07+ GCTGCAAACCGTAGCAACTGCTGAGGATGAGGAAGCCAGAAAGGCAGCCATAGGTGAGGT
rJMSF053E15+ GCTGCAAACCGTAGCAACTGCTGAGGATGAGGAAGCCAGAAAGGCAGCCATAGGTGAGGT
rJMSF009H03+ GCTGCAAACCGTAGCAACTGCTGAGGATGAGGAAGCCAGAAAGGCAGCCATAGATGAGGT
                      ____________________________________________________________
consensus GCTGCAAACCGTAGCAACTGCTGAGGATGAGGAAGCCAGAAAGGCAGCCATAGGTGAGGT
 
. : . : . : . : . : . :
rJMSF007M07+ GGAAGAAGGGTTGGGGGTATTGGAGGGTGCCTTCCAAAGTTGCAGCAAAGGGAAGAAATT
rJMSF053E15+ GGAAGAAGGGTTGGGGGTATTGGAGGGTGCCTTCCAAAGTTGCAGCAAAGGGAAGAAATT
rJMSF009H03+ GGAAGAAGGGTTGGGGGTATTGGAGGGTGCCTTCCAAAGTTGCAGCAAAGGGAAGAAATT
                      ____________________________________________________________
consensus GGAAGAAGGGTTGGGGGTATTGGAGGGTGCCTTCCAAAGTTGCAGCAAAGGGAAGAAATT
 
. : . : . : . : . : . :
rJMSF007M07+ CTTTGGCGGAGAGAGAATAGGGTTCTTGGACATCGCACTGGGATGCTTTGTGGCCTGGAT
rJMSF053E15+ CTTTGGCGGAGAGAGAATAGGGTTCTTGGACATCGCACTGGGATGCTTTGTGGCCTGGAT
rJMSF009H03+ CTTTGGCGGAGAGAGAATAGGGTTCTTGGACATCGCACTGGGATGCTTTGTGGCCTGGAT
                      ____________________________________________________________
consensus CTTTGGCGGAGAGAGAATAGGGTTCTTGGACATCGCACTGGGATGCTTTGTGGCCTGGAT
 
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rJMSF007M07+ AAGGGTCATCGAGACATTTAACAGCATTAAGTTTCTGGACGAAGCTAAGGTTCCTGGTTT
rJMSF053E15+ AAGGGTCATCGAGACATTTAACAGCATTAAGTTTCTGGACGAAGCTAAGGTTCCTGGTTT
rJMSF009H03+ AAGGGTCATCGAGACATTTAACAGCATTAAGTTTCTGGACGAAGCTAAGGTTCCTGGTTT
                      ____________________________________________________________
consensus AAGGGTCATCGAGACATTTAACAGCATTAAGTTTCTGGACGAAGCTAAGGTTCCTGGTTT
 
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rJMSF007M07+ GGCGAATTGGGCAGAAGATTTCTGCGGTGATGATGCGGTGAAGGATGTGATGCCTTCAAC
rJMSF053E15+ GGCGAATTGGGCAGAAGATTTCTGCGGTGATGATGCGGTGAAGGATGTGATGCCTTCAAC
rJMSF009H03+ GGCGAATTGGGCAGAAGATTTCTGCGGTGATGATGCGGTGAAGGATGTGATGCCTTCAAC
                      ____________________________________________________________
consensus GGCGAATTGGGCAGAAGATTTCTGCGGTGATGATGCGGTGAAGGATGTGATGCCTTCAAC
 
. : . : . : . : . : . :
rJMSF007M07+ TGAGAAACTAGCGGAGTTTTCAAAGGCGTTCTTCACCCATATCAAACCCCAATCTTAATT
rJMSF053E15+ TGAGAAACTAGCGGAGTTTTCAAAGGCGTTCTTCACCCATATCAAACCCCAATCTTAATT
rJMSF009H03+ TGAGAAACTAGCGGAGTTTTCAAAGGCGTTCTTCACCCATATCAAACCCCAATCTTAATT
                      ____________________________________________________________
consensus TGAGAAACTAGCGGAGTTTTCAAAGGCGTTCTTCACCCATATCAAACCCCAATCTTAATT
 
. : . : . : . : . : . :
rJMSF007M07+ GATTGCTTGAGAATTGAGATGTAT
rJMSF053E15+ GATTGCTTGAGAATTGAGATGTAT
rJMSF009H03+ GATTGCTTGAGAATTGAGATGTATGTAGTCTGATATTCTGTTGCTCATCTTGTGAGTTCA
                      ____________________________________________________________
consensus GATTGCTTGAGAATTGAGATGTATGTAGTCTGATATTCTGTTGCTCATCTTGTGAGTTCA
 
. : . : . : . : . : . :
rJMSF009H03+ ACCATGTATCTTCAAATTTCCTATGTAGTGTGATGATATTGTTGTTATCATTCCAAATGA
                      ____________________________________________________________
consensus ACCATGTATCTTCAAATTTCCTATGTAGTGTGATGATATTGTTGTTATCATTCCAAATGA