Contig 008454:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF007M07Sequence295008454 (5)ref|XP_009770048.1|4e-34PREDICTED: glutathione S-transferase U17-like [Nicotiana sylvestris]801008454 (5)ref|XP_009770048.1|1e-104PREDICTED: glutathione S-transferase U17-like [Nicotiana sylvestris]
JMSF009H03Sequence365008454 (5)ref|XP_009770048.1|9e-50PREDICTED: glutathione S-transferase U17-like [Nicotiana sylvestris]755008454 (5)ref|XP_009770048.1|7e-98PREDICTED: glutathione S-transferase U17-like [Nicotiana sylvestris]
JMSF053E15Sequence458019046ref|XP_004243945.1|7e-43PREDICTED: protein Brevis radix-like 4 [Solanum lycopersicum]811008454 (5)ref|XP_009770048.1|9e-105PREDICTED: glutathione S-transferase U17-like [Nicotiana sylvestris]

Alignment

This contig is upended


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rJMSF007M07+                                                                    TT
                      ____________________________________________________________
consensus                                                                       TT
 
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JMSF007M07-                                    TCAGCCATGGCGTCAGAGAGTGTGAAACTCTTGGG
JMSF009H03-                                    TCAGCCATGGCGTCAGAGAGTGTGAAACTCTTGGG
rJMSF007M07+          TTAGCCCTTGNTTGCTTCATTNTGATCAGCCATGGCGTCAGAGAGTGTGAAACTCTTGGG
rJMSF053E15+                                   TCAGCCATGGCGTCAGAGAGTGTGAAACTCTTGGG
                      ____________________________________________________________
consensus             TTAGCCCTTGNTTGCTTCATTNTGATCAGCCATGGCGTCAGAGAGTGTGAAACTCTTGGG
 
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JMSF007M07-           TGCATGGGCGAGCCCTGTTGTGCTCCGCGCGCGCATCGCCTTCAACATCAAGTCTATAGC
JMSF009H03-           TGCATGGGCGAGCCCTGTTGTGCTCCGCGCGCGCATCGCCTTCAACATCAAGTCTATAGC
rJMSF007M07+          TGCATGGGCGAGCCCTGTTGTGCTCCGCGCGCGCATCGCCTTCAACATCAAGTCTATAGC
rJMSF053E15+          TGCATGGGCGAGCCCTGTTGTGCTCCGCGCGCGCATCGCCTTCAACATCAAGTCTATAGC
rJMSF009H03+                                   CGCGCGCGCATCGCCTTCAACATCAAGTCTATAGC
                      ____________________________________________________________
consensus             TGCATGGGCGAGCCCTGTTGTGCTCCGCGCGCGCATCGCCTTCAACATCAAGTCTATAGC
 
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JMSF007M07-           TTACGAGTTCCTGGAGGAGAATTTTGCAGCCAAGAGCGACCTTCTACTCAAATCTAATCC
JMSF009H03-           TTACGAGTTCCTGGAGGAGAATTTTGCAGCCAAGAGCGACCTTCTACTCAAATCTAATCC
rJMSF007M07+          TTACGAGTTCCTGGAGGAGAATTTTGCAGCCAAGAGCGACCTTCTACTCAAATCTAATCC
rJMSF053E15+          TTACGAGTTCCTGGAGGAGAATTTTGCAGCCAAGAGCGACCTTCTACTCAAATCTAATCC
rJMSF009H03+          TTACGAGTTCCTGGAGGAGAATTTTGCAGCCAAGAGCGACCTTCTACTCAAATCTAATCC
                      ____________________________________________________________
consensus             TTACGAGTTCCTGGAGGAGAATTTTGCAGCCAAGAGCGACCTTCTACTCAAATCTAATCC
 
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JMSF007M07-           AGTTTACAAGAAAGTCCCTGTTATCATTCACAACCAGAACCCCGTTTGCGAGTCCCTCAT
JMSF009H03-           AGTTTACAAGAAAGTCCCTGTTATCATTCACAACCAGAACCCCGTTTGCGAGTCCCTCAT
rJMSF007M07+          AGTTTACAAGAAAGTCCCTGTTATCATTCACAACCAGAACCCCGTTTGCGAGTCCCTCAT
rJMSF053E15+          AGTTTACAAGAAAGTCCCTGTTATCATTCACAACCAGAACCCCGTTTGCGAGTCCCTCAT
rJMSF009H03+          AGTTTACAAGAAAGTCCCTGTTATCATTCACAACCAGAACCCCGTTTGCGAGTCCCTCAT
                      ____________________________________________________________
consensus             AGTTTACAAGAAAGTCCCTGTTATCATTCACAACCAGAACCCCGTTTGCGAGTCCCTCAT
 
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JMSF007M07-           AATCCTCCAGTATATTGATGANGTCTGGAATTCCGGTCCGGC                  
JMSF009H03-           AATCCTCCAGTATATTGATGAGGTCTGGAATTCCGGTCCGGCAATCATGCCTGCCCATCC
rJMSF007M07+          AATCCTCCAGTATATTGATGAGGTCTGGAATTCCGGTCCGGCAATCATGCCTGCCCATCC
rJMSF053E15+          AATCCTCCAGTATATTGATGAGGTCTGGAATTCCGGTCCGGCAATCATGCCTGCCCATCC
rJMSF009H03+          AATCCTCCAGTATATTGATGAGGTCTGGAATTCCGGTCCGGCAATCATGCCTGCCCATCC
                      ____________________________________________________________
consensus             AATCCTCCAGTATATTGATGAGGTCTGGAATTCCGGTCCGGCAATCATGCCTGCCCATCC
 
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JMSF009H03-           TTATGACCGGGCCATCCACCGCTTCTGGGCCACTTATATTGATCATACGTGG        
rJMSF007M07+          TTATGACCGGGCCATCCACCGCTTCTGGGCCACTTATATTGATCATACGTGGTTCCCAAA
rJMSF053E15+          TTATGACCGGGCCATCCACCGCTTCTGGGCCACTTATATTGATCATACGTGGTTCCCAAA
rJMSF009H03+          TTATGACCGGGCCATCCACCGCTTCTGGGCCACTTATATTGATCATACGTGGTTCCCAAA
                      ____________________________________________________________
consensus             TTATGACCGGGCCATCCACCGCTTCTGGGCCACTTATATTGATCATACGTGGTTCCCAAA
 
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rJMSF007M07+          GCTGCAAACCGTAGCAACTGCTGAGGATGAGGAAGCCAGAAAGGCAGCCATAGGTGAGGT
rJMSF053E15+          GCTGCAAACCGTAGCAACTGCTGAGGATGAGGAAGCCAGAAAGGCAGCCATAGGTGAGGT
rJMSF009H03+          GCTGCAAACCGTAGCAACTGCTGAGGATGAGGAAGCCAGAAAGGCAGCCATAGATGAGGT
                      ____________________________________________________________
consensus             GCTGCAAACCGTAGCAACTGCTGAGGATGAGGAAGCCAGAAAGGCAGCCATAGGTGAGGT
 
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rJMSF007M07+          GGAAGAAGGGTTGGGGGTATTGGAGGGTGCCTTCCAAAGTTGCAGCAAAGGGAAGAAATT
rJMSF053E15+          GGAAGAAGGGTTGGGGGTATTGGAGGGTGCCTTCCAAAGTTGCAGCAAAGGGAAGAAATT
rJMSF009H03+          GGAAGAAGGGTTGGGGGTATTGGAGGGTGCCTTCCAAAGTTGCAGCAAAGGGAAGAAATT
                      ____________________________________________________________
consensus             GGAAGAAGGGTTGGGGGTATTGGAGGGTGCCTTCCAAAGTTGCAGCAAAGGGAAGAAATT
 
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rJMSF007M07+          CTTTGGCGGAGAGAGAATAGGGTTCTTGGACATCGCACTGGGATGCTTTGTGGCCTGGAT
rJMSF053E15+          CTTTGGCGGAGAGAGAATAGGGTTCTTGGACATCGCACTGGGATGCTTTGTGGCCTGGAT
rJMSF009H03+          CTTTGGCGGAGAGAGAATAGGGTTCTTGGACATCGCACTGGGATGCTTTGTGGCCTGGAT
                      ____________________________________________________________
consensus             CTTTGGCGGAGAGAGAATAGGGTTCTTGGACATCGCACTGGGATGCTTTGTGGCCTGGAT
 
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rJMSF007M07+          AAGGGTCATCGAGACATTTAACAGCATTAAGTTTCTGGACGAAGCTAAGGTTCCTGGTTT
rJMSF053E15+          AAGGGTCATCGAGACATTTAACAGCATTAAGTTTCTGGACGAAGCTAAGGTTCCTGGTTT
rJMSF009H03+          AAGGGTCATCGAGACATTTAACAGCATTAAGTTTCTGGACGAAGCTAAGGTTCCTGGTTT
                      ____________________________________________________________
consensus             AAGGGTCATCGAGACATTTAACAGCATTAAGTTTCTGGACGAAGCTAAGGTTCCTGGTTT
 
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rJMSF007M07+          GGCGAATTGGGCAGAAGATTTCTGCGGTGATGATGCGGTGAAGGATGTGATGCCTTCAAC
rJMSF053E15+          GGCGAATTGGGCAGAAGATTTCTGCGGTGATGATGCGGTGAAGGATGTGATGCCTTCAAC
rJMSF009H03+          GGCGAATTGGGCAGAAGATTTCTGCGGTGATGATGCGGTGAAGGATGTGATGCCTTCAAC
                      ____________________________________________________________
consensus             GGCGAATTGGGCAGAAGATTTCTGCGGTGATGATGCGGTGAAGGATGTGATGCCTTCAAC
 
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rJMSF007M07+          TGAGAAACTAGCGGAGTTTTCAAAGGCGTTCTTCACCCATATCAAACCCCAATCTTAATT
rJMSF053E15+          TGAGAAACTAGCGGAGTTTTCAAAGGCGTTCTTCACCCATATCAAACCCCAATCTTAATT
rJMSF009H03+          TGAGAAACTAGCGGAGTTTTCAAAGGCGTTCTTCACCCATATCAAACCCCAATCTTAATT
                      ____________________________________________________________
consensus             TGAGAAACTAGCGGAGTTTTCAAAGGCGTTCTTCACCCATATCAAACCCCAATCTTAATT
 
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rJMSF007M07+          GATTGCTTGAGAATTGAGATGTAT                                    
rJMSF053E15+          GATTGCTTGAGAATTGAGATGTAT                                    
rJMSF009H03+          GATTGCTTGAGAATTGAGATGTATGTAGTCTGATATTCTGTTGCTCATCTTGTGAGTTCA
                      ____________________________________________________________
consensus             GATTGCTTGAGAATTGAGATGTATGTAGTCTGATATTCTGTTGCTCATCTTGTGAGTTCA
 
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rJMSF009H03+          ACCATGTATCTTCAAATTTCCTATGTAGTGTGATGATATTGTTGTTATCATTCCAAATGA
                      ____________________________________________________________
consensus             ACCATGTATCTTCAAATTTCCTATGTAGTGTGATGATATTGTTGTTATCATTCCAAATGA