| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF009C11 | Sequence | 266 | 008452 (6) | ref|XP_010675387.1| | 59.3 | PREDICTED: uncharacterized protein LOC104891398 [Beta vulgaris subsp. vulgaris] | 759 | 008452 (6) | ref|XP_009587640.1| | 291 | PREDICTED: uncharacterized protein LOC104085338 [Nicotiana tomentosiformis] |
| JMSF029I16 | Sequence | 597 | 008452 (6) | ref|XP_010089571.1| | 3e-70 | hypothetical protein L484_020961 [Morus notabilis] gb|EXB38042.1| hypothetical p | 735 | 008452 (6) | ref|XP_009587640.1| | 281 | PREDICTED: uncharacterized protein LOC104085338 [Nicotiana tomentosiformis] |
| JMSF047J01 | Sequence | 602 | 008452 (6) | ref|XP_010089571.1| | 9e-71 | hypothetical protein L484_020961 [Morus notabilis] gb|EXB38042.1| hypothetical p | 712 | 008452 (6) | ref|XP_009778902.1| | 274 | PREDICTED: uncharacterized protein LOC104228188 [Nicotiana sylvestris] |
This contig is upended
. : . : . : . : . : . :
JMSF029I16- GGGATCAA
JMSF009C11- GGGATCAA
JMSF047J01- GGGATCAA
____________________________________________________________
consensus GGGATCAA
. : . : . : . : . : . :
JMSF029I16- GTCAAGTTTGGCGACATTAATTCTTCAATTCACTCATGGAGGTTTGCTTTCTCTCTTCAA
JMSF009C11- GTCAAGTTTGGCGACATTAATTCTTCAATTCACTCATGGAGGTTTGCTTTCTCTCTTCAA
JMSF047J01- GTCAAGTTTGGCGACATTAATTCTTCAATTCACTCATGGAGGTTTGCTTTCTCTCTTCAA
____________________________________________________________
consensus GTCAAGTTTGGCGACATTAATTCTTCAATTCACTCATGGAGGTTTGCTTTCTCTCTTCAA
. : . : . : . : . : . :
JMSF029I16- ATTCCTTTGCCAAAACCACAGAAGCCTTCCCTCTGATCCCAGCAAAATTCCCCTCCACAA
JMSF009C11- ATTCCTTTGCCAAAACCACAGAAGCCTTCCCTCTGATCCCAGCAAAATTCCCCTCCACAA
JMSF047J01- ATTCCTTTGCCAAAACCACAGAAGCCTTCCCTCTGATCCCAGCAAAATTCCCCTCCACAA
____________________________________________________________
consensus ATTCCTTTGCCAAAACCACAGAAGCCTTCCCTCTGATCCCAGCAAAATTCCCCTCCACAA
. : . : . : . : . : . :
JMSF029I16- GAACACGGCCGTTCTCCCATCTCCATTTCAAGAAATCTTCAACCCCGCTGTCTCTAAAAT
JMSF009C11- GAACACGGCCGTTCTCCCATCTCCATTTCAAGAAATCTTCAACCCCGCTGTCTCTAAAAT
JMSF047J01- GAACACGGCCGTTCTCCCATCTCCATTTCAAGAAATCTTCAACCCCGCTGTCTCTAAAAT
____________________________________________________________
consensus GAACACGGCCGTTCTCCCATCTCCATTTCAAGAAATCTTCAACCCCGCTGTCTCTAAAAT
. : . : . : . : . : . :
JMSF029I16- GTTGTTTAGGAGATTCGGCAAAAGATGAGGAGAGAGCAAGTGTGGTCGATGGTGATTGGC
JMSF009C11- GTTGTTTAGGAGATTCGGCAAAAGATGAGGAGAGAGCAAGTGTGGTCGATGGTGATTGGC
JMSF047J01- GTTGTTTAGGAGATTCGGCAAAAGATGAGGAGAGAGCAAGTGTGGTCGATGGTGATTGGC
____________________________________________________________
consensus GTTGTTTAGGAGATTCGGCAAAAGATGAGGAGAGAGCAAGTGTGGTCGATGGTGATTGGC
. : . : . : . : . : . :
JMSF029I16- GAGGTTTTCGTGCGAGATTAGTGGCCGGAGAAGGCGTACTGAGGTCCGATCAAAAAGATC
JMSF009C11- GAGGTTTTCGTGCGAGAT
JMSF047J01- GAGGTTTTCGTGCGAGATTAGTGGCCGGAGAAGGCGTACTGAGGTCCGATCAAAAAGATC
____________________________________________________________
consensus GAGGTTTTCGTGCGAGATTAGTGGCCGGAGAAGGCGTACTGAGGTCCGATCAAAAAGATC
. : . : . : . : . : . :
JMSF029I16- AGGCGCCGATCATCACCATCGGCGAGAAATGGGCACACAAGATCCACGAACCGGAAAAAG
JMSF047J01- AGGCGCCGATCATCACCATCGGCGAGAAATGGGCACACAAGATCCACGAACCGGAAAAAG
rJMSF029I16+ CACGANCCGGAAAAAG
rJMSF047J01+ CCGGAAAAAG
rJMSF009C11+ GCGAGAAATGGCCACACNAGATCCACGAACCGGAAAAAG
____________________________________________________________
consensus AGGCGCCGATCATCACCATCGGCGAGAAATGGGCACACAAGATCCACGAACCGGAAAAAG
. : . : . : . : . : . :
JMSF029I16- GGTGCTTGCTGGTAGCGACGGAGAAGCTGGACGGGGTCCACATCTTCGAACGAACCGTGA
JMSF047J01- GGTGCTTGCTGGTAGCGACGGAGAAGCTGGACGGGGTCCACATCTTCGAACGAACCGTGA
rJMSF029I16+ GGTGCTTGCTGGTAGCGACGGAGAAGCTGGACGGGGTCCACATCTTCGAACGAACCGTGA
rJMSF047J01+ GGTGCTTGCTGGTAGCGACGGAGAAGCTGGACGGGGTCCACATCTTCGAACGAACCGTGA
rJMSF009C11+ GGTGCTTGCTGGTAGCGACGGAGAAGCTGGACGGGGTCCACATCTTCGAACGAACCGTGA
____________________________________________________________
consensus GGTGCTTGCTGGTAGCGACGGAGAAGCTGGACGGGGTCCACATCTTCGAACGAACCGTGA
. : . : . : . : . : . :
JMSF029I16- TTCTGTTACTGTCGGTGGGGGCAGTAGGCCCCATCACAGGGATCATCCTCAACCGCCCCT
JMSF047J01- TTCTGTTACTGTCGGTGGGGGCAGTAGGCCCCATCACAGGGATCATCCTCAACCGCCCCT
rJMSF029I16+ TTCTGTTACTGTCGGTGGGGGCAGTAGGCCCCATCACAGGGATCATCCTCAACCGCCCCT
rJMSF047J01+ TTCTGTTACTGTCGGTGGGGGCAGTAGGCCCCATCACAGGGATCATCCTCAACCGCCCCT
rJMSF009C11+ TTCTGTTACTGTCGGTGGGGGCAGTAGGCCCCATCACAGGGATCATCCTCAACCGCCCCT
____________________________________________________________
consensus TTCTGTTACTGTCGGTGGGGGCAGTAGGCCCCATCACAGGGATCATCCTCAACCGCCCCT
. : . : . : . : . : . :
JMSF029I16- CCCTCATGTCAATCAAGGAGATGAGGTCATCGGCGTTGGACGTCGCCGGCACGTTCTCCA
JMSF047J01- CCCTCATGTCAATCAAGGAGATGAGGTCATCGGCGTTGGACGTCGCCGGCACGTTCTCCA
rJMSF029I16+ CCCTCATGTCAATCAAGGAGATGAGGTCATCGGCGTTGGACGTCGCCGGCACGTTCTCCA
rJMSF047J01+ CCCTCATGTCAATCAAGGAGATGAGGTCATCGGCGTTGGACGTCGCCGGCACGTTCTCCA
rJMSF009C11+ CCCTCATGTCAATCAAGGAGATGAGGTCATCGGCGTTGGACGTCGCCGGCACGTTCTCCA
____________________________________________________________
consensus CCCTCATGTCAATCAAGGAGATGAGGTCATCGGCGTTGGACGTCGCCGGCACGTTCTCCA
. : . : . : . : . : . :
JMSF029I16- ACCGCCCCTTGTTCTTCGGGGGGCCGTTGGAAGAAGGGGTGTTCTTGGT
JMSF047J01- ACCGCCCCTTGTTCTTCGGGGGGCCGTTGGAAGAAGGGGTGTTCTTGGTGGAGG
rJMSF029I16+ ACCGCCCCTTGTTCTTCGGGGGGCCGTTGGAAGAAGGGGTGTTCTTGGTGGAGGAGGAGG
rJMSF047J01+ ACCGCCCCTTGTTCTTCGGGGGGCCGTTGGAAGAAGGGGTGTTCTTGGTGGAGGAGGAGG
rJMSF009C11+ ACCGCCCCTTGTTCTTCGGGGGGCCGTTGGAAGAAGGGGTGTTCTTGGTGGAGGAGGAGG
____________________________________________________________
consensus ACCGCCCCTTGTTCTTCGGGGGGCCGTTGGAAGAAGGGGTGTTCTTGGTGGAGGAGGAGG
. : . : . : . : . : . :
rJMSF029I16+ GGGAAGATAACAATGGGGTTGGGAAGAGTGGGGTTTTGGATGAAGTGATGAAAGGATTGT
rJMSF047J01+ GGGAAGATAACAATGGGGTTGGGAAGAGTGGGGTTTTGGATGAAGTGATGAAAGTATTGT
rJMSF009C11+ GGGAAGATAACAATGGGGTTGGGAAGAGTGGGGTTTTGGATGAAGTGATGAAAGGATTGT
____________________________________________________________
consensus GGGAAGATAACAATGGGGTTGGGAAGAGTGGGGTTTTGGATGAAGTGATGAAAGGATTGT
. : . : . : . : . : . :
rJMSF029I16+ ACTATGGGACTAAAGAGACTGTGGGGTGTGCTGCAGAAATGGTGAAGAGGGAAGTTGTTG
rJMSF047J01+ ACTATGGGACTAAAGAGACTGTGGGGTGTGCTGCAGAAATGGTGAAGAGGGAAGTTGTTG
rJMSF009C11+ ACTATGGGACTAAAGAGACTGTGGGGTGTGCTGCAGAAATGGTGAAGAGGGAAGTTGTTG
____________________________________________________________
consensus ACTATGGGACTAAAGAGACTGTGGGGTGTGCTGCAGAAATGGTGAAGAGGGAAGTTGTTG
. : . : . : . : . : . :
rJMSF029I16+ GGGTGGATAGTTTTAGGTTCTTTGATGGGTATTGTGCATGGGAGAGAGAACAGTTAAGAG
rJMSF047J01+ GGGTGGATAGTTTTAGGTTCTTTGATGGGTATTGTGCATGGGAGAGAGAACAGTTAAGAG
rJMSF009C11+ GGGTGGATAGTTTTAGGTTCTTTGATGGGTATTGTGCATGGGAGAGAGAACAGTTAAGAG
____________________________________________________________
consensus GGGTGGATAGTTTTAGGTTCTTTGATGGGTATTGTGCATGGGAGAGAGAACAGTTAAGAG
. : . : . : . : . : . :
rJMSF029I16+ ATGAGATTCGAGCTGGTTATTGGACAATTGCAGCTTGTAGCCCAGCGGTCATTGGGCTAT
rJMSF047J01+ ATGAGATTCGAGCTGGTTATTGGACAATTGCAGCTTGTAGCCCAGCGGTCATTGGGCTAT
rJMSF009C11+ ATGAGATTCGAGCTGGTTATTGGACAATTGCAGCTTGTAGCCCAGCGGTCATTGGGCTAT
____________________________________________________________
consensus ATGAGATTCGAGCTGGTTATTGGACAATTGCAGCTTGTAGCCCAGCGGTCATTGGGCTAT
. : . : . : . : . : . :
rJMSF029I16+ CTAATATAGGAAGTGTTGGTCTTTGGAAGACCATTGTTGGGCTTATAGGCCGGAGAAAAG
rJMSF047J01+ CTAATATAGTAAGTGTTGGTCTTTGGAAGACCATTGTTGGGCTTATAGGCCGGAGAAAAG
rJMSF009C11+ CTAATATAGGAAGTGTTGGTCTTTGGAAGACCATTGTTGGGCTTATAGGCCGGAGAAAAG
____________________________________________________________
consensus CTAATATAGGAAGTGTTGGTCTTTGGAAGACCATTGTTGGGCTTATAGGCCGGAGAAAAG
. : . : . : . : . : . :
rJMSF029I16+ TTTGGTAAAATCTGGGAAATTTGAAGACCTTAATCTCATCGTGTTATATATAATATACGA
rJMSF047J01+ TTTGGTAAAATCTGGGAAATTTGAAGACCTTAATCTCATCGTGTTATATATAATATACGA
rJMSF009C11+ TTTGGTAAAATCTGGGAAATTTGAAGACCTTAATCTCATCGTGTTATATATAATATACGA
____________________________________________________________
consensus TTTGGTAAAATCTGGGAAATTTGAAGACCTTAATCTCATCGTGTTATATATAATATACGA
. : . : . : . : . : . :
rJMSF029I16+ AAAGGGAAGCTATTAAGCTAAGTTCTTTGTAAATGACTCCATTATGGAGAATTGCAATTC
rJMSF047J01+ AAAGGGAAGCTATTAAGCTAAGTTCTTTGTAAATGACTCCATTATGGAGAATTGCAATTC
rJMSF009C11+ AAAGGGAAGCTATTAAGCTAAGTTCTTTGTAAATGACTCCATTATGGAGAATTGCAATTC
____________________________________________________________
consensus AAAGGGAAGCTATTAAGCTAAGTTCTTTGTAAATGACTCCATTATGGAGAATTGCAATTC
. : . : . : . : . : . :
rJMSF029I16+ TCATGTTTCAATTCTGGTTGTAATGTAGATGTTACCATGTACCATTGTACC
rJMSF047J01+ TCATGTTTCAATTCTGGTTGTAATGTAGATGTTACCATGTAC
rJMSF009C11+ TCATGTTTCAATTCTGGTTGTAATGTAGATGTTACCATGTACCATTGTACCTCCGCTTTA
____________________________________________________________
consensus TCATGTTTCAATTCTGGTTGTAATGTAGATGTTACCATGTACCATTGTACCTCCGCTTTA