Contig 008451:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF008O17Sequence293016704ref|XP_008231609.1|4e-16PREDICTED: pentatricopeptide repeat-containing protein At1g11290 [Prunus mume]754008451 (2)emb|CDP20634.1|4e-129unnamed protein product [Coffea canephora]
JMSF024P10Sequence686010705 (3)ref|XP_009630469.1|2e-87PREDICTED: tRNA (uracil-5-)-methyltransferase homolog A [Nicotiana tomentosifor729008451 (2)emb|CDP20634.1|4e-111unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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rJMSF008O17+                                    AACGAAGCNTGGGACTTCATCAATAACATGCCCG
                      ____________________________________________________________
consensus                                       AACGAAGCNTGGGACTTCATCAATAACATGCCCG
 
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rJMSF024P10+                                                       GGATCCACAAGAACA
rJMSF008O17+          TTGAGCCCGAGATCAACGTNTTCGGTGCAATGCTGGGCGCNTGCAGGATCCACAAGAACA
                      ____________________________________________________________
consensus             TTGAGCCCGAGATCAACGTNTTCGGTGCAATGCTGGGCGCNTGCAGGATCCACAAGAACA
 
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rJMSF024P10+          TCGAGCTCGGGGAGAAGGCCGCAGACCGACTATTCGAGCTGCACCCTGACGACGGTGGAT
rJMSF008O17+          TCGAGCTCGGGGAGAAGGCCGCAGACCGACTATTCGAGCTGCACCCTGACGACGGTGGAT
                      ____________________________________________________________
consensus             TCGAGCTCGGGGAGAAGGCCGCAGACCGACTATTCGAGCTGCACCCTGACGACGGTGGAT
 
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rJMSF024P10+          ACCATGTTTTGCTCGCTAACATATACGCCTCAGCTTCGATGTGGAACAAAGTGGCTAAAG
rJMSF008O17+          ACCATGTTTTGCTCGCTAACATATACGCCTCAGCTTCGATGTGGAACAAAGTGGCTAAAG
                      ____________________________________________________________
consensus             ACCATGTTTTGCTCGCTAACATATACGCCTCAGCTTCGATGTGGAACAAAGTGGCTAAAG
 
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rJMSF024P10+          TCCGAACCCTGATGGAGAAGAAAGGGATTCGCAAAACCCCCGGCTGCAGTCTCGTCGATT
rJMSF008O17+          TCCGAACCCTGATGGAGAAGAAAGGGATTCGCAAAACCCCCGGCTGCAGTCTCGTCGATT
                      ____________________________________________________________
consensus             TCCGAACCCTGATGGAGAAGAAAGGGATTCGCAAAACCCCCGGCTGCAGTCTCGTCGATT
 
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rJMSF024P10+          TGAGAAACGAGGTCCATTCGTTCTACTCTGGCAGCACAACCCACCCCCAGTCCAAACAGA
rJMSF008O17+          TGAGAAACGAGGTCCATTCGTTCTACTCTGGCAGCACAACCCACCCCCAGTCCAAACAGA
                      ____________________________________________________________
consensus             TGAGAAACGAGGTCCATTCGTTCTACTCTGGCAGCACAACCCACCCCCAGTCCAAACAGA
 
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rJMSF024P10+          TCTATGCATATCTCGAAACCCTGCTCGAAAAGATCAAAGTCGCTGGATACACCCCCGTTA
rJMSF008O17+          TCTATGCATATCTCGAAACCCTGCTCGAAAAGATCAAAGTCGCTGGATACACCCCCGTTA
                      ____________________________________________________________
consensus             TCTATGCATATCTCGAAACCCTGCTCGAAAAGATCAAAGTCGCTGGATACACCCCCGTTA
 
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rJMSF024P10+          CAGATTCATTCCACGATGTCGAAGATGATGTTCAGGAGCAGCTGGTCAGCACCCATAGCG
rJMSF008O17+          CAGATTCATTCCACGATGTCGAAGATGATGTTCAGGAGCAGCTGGTCAGCACCCATAGCG
                      ____________________________________________________________
consensus             CAGATTCATTCCACGATGTCGAAGATGATGTTCAGGAGCAGCTGGTCAGCACCCATAGCG
 
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rJMSF024P10+          AAAAGCTTGCTATCGCATTCAGTCTTCTGAACACCCGCCCCGGTACCGCTATCCATATCA
rJMSF008O17+          AAAAGCTTGCTATCGCATTCAGTCTTCTGAACACCCGCCCCGGTACCGCTATCCATATCA
                      ____________________________________________________________
consensus             AAAAGCTTGCTATCGCATTCAGTCTTCTGAACACCCGCCCCGGTACCGCTATCCATATCA
 
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rJMSF024P10+          GGAAAAACCTTCGGGTTTGCAGCGACTGCCATACTGCAACGAAATTCATCTCTCTCGTTA
rJMSF008O17+          GGAAAAACCTTCGGGTTTGCAGCGACTGCCATACTGCAACGAAATTCATCTCTCTCGTTA
                      ____________________________________________________________
consensus             GGAAAAACCTTCGGGTTTGCAGCGACTGCCATACTGCAACGAAATTCATCTCTCTCGTTA
 
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rJMSF024P10+          CTCAGAGAGAAATTATCGTTCGTGATATGCACCGGTTCCACCATTTCAAGAACGGAACCT
rJMSF008O17+          CTCAGAGAGAAATTATCGTTCGTGATATGCACCGGTTCCACCATTTCAAGAACGGAACCT
                      ____________________________________________________________
consensus             CTCAGAGAGAAATTATCGTTCGTGATATGCACCGGTTCCACCATTTCAAGAACGGAACCT
 
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rJMSF024P10+          GTTCTTGTGGTGATTACTGGTGATCTTCCATGGCAGCAGGTACCATTCTTTATAGCTCCA
rJMSF008O17+          GTTCTTGTGGTGATTACTGGTGATCTTCCATGGCAGCAGGTACCATTCTTTATAGCTCCA
                      ____________________________________________________________
consensus             GTTCTTGTGGTGATTACTGGTGATCTTCCATGGCAGCAGGTACCATTCTTTATAGCTCCA
 
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rJMSF024P10+          CCACTTTCTGAGTTTCTGTACCATCATTCTGCATTCTCAAATTTACATATTACAAAAACT
rJMSF008O17+          CCACTTTCTGAGAGTCTGTACCATCATTCTGCATTCTCAAATTTACATATTACAAAAACT
                      ____________________________________________________________
consensus             CCACTTTCTGAGTTTCTGTACCATCATTCTGCATTCTCAAATTTACATATTACAAAAACT