Contig 008449:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN020A08Sequence611008449 (3)ref|XP_006355471.1|2e-63PREDICTED: scarecrow-like protein 22-like [Solanum tuberosum]
JMSF008H13Sequence447000416 (3)emb|CDP09942.1|1e-04unnamed protein product [Coffea canephora]711008449 (3)gb|KDO61473.1|2e-42hypothetical protein CISIN_1g042460mg [Citrus sinensis]
JMSF032B14Sequence655000416 (3)emb|CDP09942.1|6e-07unnamed protein product [Coffea canephora]719008449 (3)emb|CDP09942.1|2e-48unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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JMFN020A08-                                                            CACCGAGCCAC
                      ____________________________________________________________
consensus                                                              CACCGAGCCAC
 
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JMFN020A08-           ACTCCCTTTGCTGCTGCATTATATAAAGCAGCTTTCGCCCAAAGTTGTGGTTTCTCTGGC
                      ____________________________________________________________
consensus             ACTCCCTTTGCTGCTGCATTATATAAAGCAGCTTTCGCCCAAAGTTGTGGTTTCTCTGGC
 
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JMFN020A08-           CCGTGGATATGAACGAACCGAGCTCCCGTTCCCACACCACCTCCTCAACGCCCTTCAATA
rJMSF032B14+                                      TTCCCACACCACCTCCTCAACGCCCTTCAATA
                      ____________________________________________________________
consensus             CCGTGGATATGAACGAACCGAGCTCCCGTTCCCACACCACCTCCTCAACGCCCTTCAATA
 
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JMFN020A08-           CTTCGAGGCTCTTTTCGAGAGCATCGATGCGGGTAACGTGACACCAGACGCATCAAACAA
rJMSF032B14+          CTTCGAGGCTCTTTTCGAGAGCATCGATGCGGGTAACGTGACACCAGACGCATCAAACAA
rJMSF008H13+                   TCTTTTCGAGAGCATCGATGCGGGTAACGTGACACCAGACGCATCAAACAA
                      ____________________________________________________________
consensus             CTTCGAGGCTCTTTTCGAGAGCATCGATGCGGGTAACGTGACACCAGACGCATCAAACAA
 
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JMFN020A08-           GATCGAACGGTTCCTCTTCCAGCCTAGCATCGAGAGCATCGTGTTTGGGCACCTCCGTTT
rJMSF032B14+          GATCGAACGGTTCCTCTTCCAGCCTAGCATCGAGAGCATCGTGTTTGGGCACCTCCGTTT
rJMSF008H13+          GATCGAACGGTTCCTCTTCCAGCCTAGCATCGAGAGCATCGTGTTTGGGCACCTCCGTTT
                      ____________________________________________________________
consensus             GATCGAACGGTTCCTCTTCCAGCCTAGCATCGAGAGCATCGTGTTTGGGCACCTCCGTTT
 
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JMFN020A08-           CCCCGACCAAATGCCTCCCTGGAGAAACCTCTTCGCATCCGCCGGGTTCCAACCACACCC
rJMSF032B14+          CCCCGACCAAATGCCTCCCTGGAGAAACCTCTTCGCATCCGCCGGGTTCCAACCACACCC
rJMSF008H13+          CCCCGACCAAATGCCTCCCTGGAGAAACCTCTTCGCATCCGCCGGGTTCCAACCACACCC
                      ____________________________________________________________
consensus             CCCCGACCAAATGCCTCCCTGGAGAAACCTCTTCGCATCCGCCGGGTTCCAACCACACCC
 
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JMFN020A08-           GTTTAGCAACTTCGCTGAAACCCAAGCTGAATGTGTCGTGAAAAGAACCGAAACCCGGGG
rJMSF032B14+          GTTTAGCAACTTCGCTGAAACCCAAGCTGAATGTGTCGTGAAAAGAACCGAAACCCGGGG
rJMSF008H13+          GTTTAGCAACTTCGCTGAAACCCAAGCTGAATGTGTCGTGAAAAGAACCGAAACCCGGGG
                      ____________________________________________________________
consensus             GTTTAGCAACTTCGCTGAAACCCAAGCTGAATGTGTCGTGAAAAGAACCGAAACCCGGGG
 
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JMFN020A08-           ATTCCACGTGCAGAAGCACCACGCATCGCTCGCCCTTTGCTGGCAAAACCGGGAGCTACT
rJMSF032B14+          ATTCCACGTGCAGAAGCACCACGCATCGCTCGCCCTTTGCTGGCAAAACCGGGAGCTACT
rJMSF008H13+          ATTCCACGTGCAGAAGCACCACGCATCGCTCGCCCTTTGCTGGCAAAACCGGGAGCTACT
                      ____________________________________________________________
consensus             ATTCCACGTGCAGAAGCACCACGCATCGCTCGCCCTTTGCTGGCAAAACCGGGAGCTACT
 
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JMFN020A08-           CTCAGCTACGGCTTGGAGGTGCTGAAGAACTTAACGGATATTCGATATCTTATATGGAGT
rJMSF032B14+          CTCAGCTACGGCTTGGAGGTGCTGAAGAACTTAACGGATATTCGATATCTTATATGGAGT
rJMSF008H13+          CTCAGCTACGGCTTGGAGGTGCTGAAGAACTTAACGGATATTCGATATCTTATATGGAGT
                      ____________________________________________________________
consensus             CTCAGCTACGGCTTGGAGGTGCTGAAGAACTTAACGGATATTCGATATCTTATATGGAGT
 
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JMFN020A08-           GAGTTTTCTTCCTTCTTGCAAGCCTATTTTGGTATTGTCTATTCTATTATGTAGTGTTAA
rJMSF032B14+          GAGTTTTCTTCCTTCTTGCAAGCCTATTTTGGTATTGTCTATTCTATTATGTAGTGTTAA
rJMSF008H13+          GAGTTTTCTTCCTTCTTGCAAGCCTATTTTGGTATTGTCTATTCTATTATGTAGTGTTAA
                      ____________________________________________________________
consensus             GAGTTTTCTTCCTTCTTGCAAGCCTATTTTGGTATTGTCTATTCTATTATGTAGTGTTAA
 
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JMFN020A08-           CTGCAGAC-AAAAATTGTCGATTAACTGATTATTTACGTGTAGGGTTATCTGTTTGGACA
rJMSF032B14+          CTGCAGACAAAAAATTGTCGATTAACTGATTATTTACGTGTAGGGTTATCTGTTTGGACA
rJMSF008H13+          CTGCAGACAAAAAATTGTCGATTAACTGATTATTTACGTGTAGGGTTATCTGTTTGGACA
                      ____________________________________________________________
consensus             CTGCAGACAAAAAATTGTCGATTAACTGATTATTTACGTGTAGGGTTATCTGTTTGGACA
 
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JMFN020A08-           T                                                           
rJMSF032B14+          TCTTTCATGCACTGCCTATGAGTTAACTGTGATGTCTGTTAACTATATTTCTGGAAGTTA
rJMSF008H13+          TCTTTCATGCACTGCCTATGAGTTAACTGTGATGTCTGTTAACTATATTTCTGGAAGTTA
                      ____________________________________________________________
consensus             TCTTTCATGCACTGCCTATGAGTTAACTGTGATGTCTGTTAACTATATTTCTGGAAGTTA
 
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rJMSF032B14+          AAAGCAGTTGGGAAGTAGAAAGATTTGGTTTCAATGTATTGCTGTTTCTATCTGGTCTTC
rJMSF008H13+          AAAGCAGTTGGGAAGTAGAAAGATTTGGTTTCAATGTATTGCTGTTTCTATCTGGTCTTC
                      ____________________________________________________________
consensus             AAAGCAGTTGGGAAGTAGAAAGATTTGGTTTCAATGTATTGCTGTTTCTATCTGGTCTTC
 
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rJMSF032B14+          CTAGGATGTTTGATAACTGTTGTTGGTTGGTTTAGAGTGGTAGACTTCTAGTTTGTTGTG
rJMSF008H13+          CTAGGATGTTTGATAACTGTTGTTGGTTGGTTTAGAGTGGTAGACTTCTAGTTTGTTGTG
                      ____________________________________________________________
consensus             CTAGGATGTTTGATAACTGTTGTTGGTTGGTTTAGAGTGGTAGACTTCTAGTTTGTTGTG
 
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rJMSF032B14+          ATTATTGTGTGTTTAATAGTACTATGT                                 
rJMSF008H13+          ATTATTGTGTGTTTAATAGTACTATGTTACATTTGGGGTCTAATTGAGACTTTGTGCGAT
                      ____________________________________________________________
consensus             ATTATTGTGTGTTTAATAGTACTATGTTACATTTGGGGTCTAATTGAGACTTTGTGCGAT