Contig 008448:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF003G01Sequence562002105 (6)gb|ABB72818.1|4e-81glutamate--tRNA ligase-like protein [Solanum tuberosum]787008448 (6)ref|XP_009796335.1|2e-88PREDICTED: glutamate--tRNA ligase, chloroplastic/mitochondrial [Nicotiana sylve
JMFF015N05Sequence551002105 (6)gb|ABB72818.1|6e-79glutamate--tRNA ligase-like protein [Solanum tuberosum]731008448 (6)ref|XP_009368383.1|1e-78PREDICTED: glutamate--tRNA ligase, chloroplastic/mitochondrial-like isoform X1
JMFF016B03Sequence616002105 (6)gb|ABB72818.1|9e-96glutamate--tRNA ligase-like protein [Solanum tuberosum]618008448 (6)ref|XP_007043106.1|1e-58Glutamate tRNA synthetase [Theobroma cacao] gb|EOX98937.1| Glutamate tRNA synthe
JMFF041L13Sequence652002105 (6)gb|ABB72818.1|8e-102glutamate--tRNA ligase-like protein [Solanum tuberosum]637008448 (6)ref|XP_009796335.1|7e-56PREDICTED: glutamate--tRNA ligase, chloroplastic/mitochondrial [Nicotiana sylve
JMFF050P03Sequence619002105 (6)gb|ABB72818.1|9e-96glutamate--tRNA ligase-like protein [Solanum tuberosum]583008448 (6)ref|XP_009368383.1|8e-48PREDICTED: glutamate--tRNA ligase, chloroplastic/mitochondrial-like isoform X1
JMSF008G20Sequence359002105 (6)ref|XP_004231106.1|2e-25PREDICTED: glutamate--tRNA ligase, chloroplastic/mitochondrial [Solanum lycoper693008448 (6)ref|XP_009368383.1|2e-59PREDICTED: glutamate--tRNA ligase, chloroplastic/mitochondrial-like isoform X1

Alignment

This contig is upended


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rJMFF003G01+                                                     ATCAGAAGAGTTAATAC
                      ____________________________________________________________
consensus                                                        ATCAGAAGAGTTAATAC
 
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rJMFF003G01+          AAATCATTGGTAGCTGCTGGAAGGATGCTGGCATTCTTACAGAATCAGGGGGTGATTTCA
rJMFF015N05+                                                    AATCAGGGGGTGATTTCA
                      ____________________________________________________________
consensus             AAATCATTGGTAGCTGCTGGAAGGATGCTGGCATTCTTACAGAATCAGGGGGTGATTTCA
 
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rJMFF003G01+          TACAAGAGGCTGTCCAGCTATTGAAGGACGGAATCGACTTGATAAGCGATTCAGAGAAAG
rJMFF015N05+          TACAAGAGGCTGTCCAGCTATTGAAGGACGGAATCGACTTGATAAGCGATTCAGAGAAAG
                      ____________________________________________________________
consensus             TACAAGAGGCTGTCCAGCTATTGAAGGACGGAATCGACTTGATAAGCGATTCAGAGAAAG
 
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rJMFF003G01+          CTCTTTCAAACTTACTATCTTATCCTTTTCATGAAACCTTGTCAAGTCCTGAAGGAAAAC
rJMFF016B03+                                            AACCTTGTCAAGTCCTGAAGGAAAAC
rJMFF015N05+          CTCTTTCAAACTTACTATCTTATCCTTTTCATGAAACCTTGTCAAGTCCTGAAGGAAAAC
rJMFF041L13+                                                           TGAAGGAAAAC
rJMSF008G20+                                            AACCTTGTCAAGTCCTGAAGGAAAAC
                      ____________________________________________________________
consensus             CTCTTTCAAACTTACTATCTTATCCTTTTCATGAAACCTTGTCAAGTCCTGAAGGAAAAC
 
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rJMFF003G01+          CTGTTCTTGAAGATCGACTTTCTGAAGTTGCGGAGAGCTTAGTAGCTGCCTACTCTAGTG
rJMFF016B03+          CTGTTCTTGAAGATCGACTTTCTGAAGTTGCGGAGAGCTTAGTAGCTGCCTACTCTAGTG
rJMFF015N05+          CTGTTCTTGAAGATCGACTTTCTGAAGTTGCGGAGAGCTTAGTAGCTGCCTACTCTAGTG
rJMFF041L13+          CTGTTCTTGAAGATCGACTTTCTGAAGTTGCGGAGAGCTTAGTAGCTGCCTACTCTAGTG
rJMFF050P03+                                               CTTAGTAGCTGCCTACTCTAGTG
rJMSF008G20+          CTGTTCTTGAAGATCGACTTTCTGAAGTTGCGGAGAGCTTAGTAGCTGCCTACTCTAGTG
                      ____________________________________________________________
consensus             CTGTTCTTGAAGATCGACTTTCTGAAGTTGCGGAGAGCTTAGTAGCTGCCTACTCTAGTG
 
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rJMFF003G01+          GGGAGCTCTTTGGTGCACTTGAAGAAGGCCAACCCGGGTGGCAGAAGTGGGTAAAGAGCT
rJMFF016B03+          GGGAGCTCTTTGGTGCACTTGAAGAAGGCCAACCCGGGTGGCAGAAGTGGGTAAAGAGCT
rJMFF015N05+          GGGAGCTCTTTGGTGCACTTGAAGAAGGCCAACCCGGGTGGCAGAAGTGGGTAAAGAGCT
rJMFF041L13+          GGGAGCTCTTTGGTGCACTTGAAGAAGGCCAACCCGGGTGGCAGAAGTGGGTAAAGAGCT
rJMFF050P03+          GGGAGCTCTTTGGTGCACTTGAAGAAGGCCAACCCGGGTGGCAGAAGTGGGTAAAGAGCT
rJMSF008G20+          GGGAGCTCTTTGGTGCACTTGAAGAAGGCCAACCCGGGTGGCAGAAGTGGGTAAAGAGCT
                      ____________________________________________________________
consensus             GGGAGCTCTTTGGTGCACTTGAAGAAGGCCAACCCGGGTGGCAGAAGTGGGTAAAGAGCT
 
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rJMFF003G01+          TTGGTAAATCACTGAAGCGGAAGGGAAAATCTCTGTTCATGCCCCTTAGGGTCTTGCTAA
rJMFF016B03+          TTGGTAAATCACTGAAGCGGAAGGGAAAATCTCTGTTCATGCCCCTTAGGGTCTTGCTAA
rJMFF015N05+          TTGGTAAATCACTGAAGCGGAAGGGAAAATCTCTGTTCATGCCCCTTAGGGTCTTGCTAA
rJMFF041L13+          TTGGTAAATCACTGAAGCGGAAGGGAAAATCTCTGTTCATGCCCCTTAGGGTCTTGCTAA
rJMFF050P03+          TTGGTAAATCACTGAAGCGGAAGGGAAAATCTCTGTTCATGCCCCTTAGGGTCTTGCTAA
rJMSF008G20+          TTGGTAAATCACTGAAGCGGAAGGGAAAATCTCTGTTCATGCCCCTTAGGGTCTTGCTAA
                      ____________________________________________________________
consensus             TTGGTAAATCACTGAAGCGGAAGGGAAAATCTCTGTTCATGCCCCTTAGGGTCTTGCTAA
 
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rJMFF003G01+          CTGGAAAGCTTCACGGCCCTGATATCGGGTCGAGTATTGTTTTGCTGTATAAAGCTGGTA
rJMFF016B03+          CTGGAAAGCTTCACGGCCCTGATATCGGGTCGAGTATTGTTTTGCTGTATAAAGCTGGTA
rJMFF015N05+          CTGGAAAGCTTCACGGCCCTGATATCGGGTCGAGTATTGTTTTGCTGTATAAAGCTGGTA
rJMFF041L13+          CTGGAAAGCTTCACGGCCCTGATATCGGGTCGAGTATTGTTTTGCTGTATAAAGCTGGTA
rJMFF050P03+          CTGGAAAGCTTCACGGCCCTGATATCGGGTCGAGTATTGTTTTGCTGTATAAAGCTGGTA
rJMSF008G20+          CTGGAAAGCTTCACGGCCCTGATATCGGGTCGAGTATTGTTTTGCTGTATAAAGCTGGTA
                      ____________________________________________________________
consensus             CTGGAAAGCTTCACGGCCCTGATATCGGGTCGAGTATTGTTTTGCTGTATAAAGCTGGTA
 
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rJMFF003G01+          ATTCAGGCGTTGTAGCATCTCAAGTTGGGTTTATACCGTTGGACGAAAGATTTAAAATGC
rJMFF016B03+          ATTCAGGCGTTGTAGCATCTCAAGTTGGGTTTATACCGTTGGACGAAAGATTTAAAATGC
rJMFF015N05+          ATTCAGGCGTTGTAGCATCTCAAGTTGGGTTTATACCGTTGGACGAAAGATTTAAAATGC
rJMFF041L13+          ATTCAGGCGTTGTAGCATCTCAAGTTGGGTTTATACCGTTGGACGAAAGATTTAAAATGC
rJMFF050P03+          ATTCAGGCGTTGTAGCATCTCAAGTTGGGTTTATACCGTTGGACGAAAGATTTAAAATGC
rJMSF008G20+          ATTCAGGCGTTGTAGCATCTCAAGTTGGGTTTATACCGTTGGACGAAAGATTTAAAATGC
                      ____________________________________________________________
consensus             ATTCAGGCGTTGTAGCATCTCAAGTTGGGTTTATACCGTTGGACGAAAGATTTAAAATGC
 
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rJMFF003G01+          TCAGAGAAGTTGACTGGGAATCCTTCAGTAAAGATCCGCCTATACTGGAGTCTGCCGGTG
rJMFF016B03+          TCAGAGAAGTTGACTGGGAATCCTTCAGTAAAGATCCGCCTATACTGGAGTCTGCCGGTG
rJMFF015N05+          TCAGAGAAGTTGACTGGGAATCCTTCAGTAAAGATCCGCCTATACTGGAGTCTGCCGGTG
rJMFF041L13+          TCAGAGAAGTTGACTGGGAATCCTTCAGTAAAGATCCGCCTATACTGGAGTCTGCCGGTG
rJMFF050P03+          TCAGAGAAGTTGACTGGGAATCCTTCAGTAAAGATCCGCCTATACTGGAGTCTGCCGGTG
rJMSF008G20+          TCAGAGAAGTTGACTGGGAATCCTTCAGTAAAGATCCGCCTATACTGGAGTCTGCCGGTG
                      ____________________________________________________________
consensus             TCAGAGAAGTTGACTGGGAATCCTTCAGTAAAGATCCGCCTATACTGGAGTCTGCCGGTG
 
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rJMFF003G01+          CTGCAACTCATTGAGGTAGACTGTAACTTGCGTTCCTTGAGTTCTTCTGTGATGACCTTT
rJMFF016B03+          CTGCAACTCATTGAGGTAGACTGTAACTTGCGTTCCTTGAGTTCTTCTGTGATGACCTTT
rJMFF015N05+          CTGCAACTCATTGAGGTAGACTGTAACTTGCGTTCCTTGAGTTCTTCTGTGATGACCTTT
rJMFF041L13+          CTGCAACTCATTGAGGTAGACTGTAACTTGCGTTCCTTGAGTTCTTCTGTGATGACCTTT
rJMFF050P03+          CTGCAACTCATTGAGGTAGACTGTAACTTGCGTTCCTTGAGTTCTTCTGTGATGACCTTT
rJMSF008G20+          CTGCAACTCATTGAGGTAGACTGTAACTTGCGTTCCTTGAGTTCTTCTGTGATGACCTTT
                      ____________________________________________________________
consensus             CTGCAACTCATTGAGGTAGACTGTAACTTGCGTTCCTTGAGTTCTTCTGTGATGACCTTT
 
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rJMFF003G01+          CGTCGTGCTCATTTTTCAGATTGCCGATTGTTTTTTGGTCGACTCGGCCTTGAGTACTGT
rJMFF016B03+          CGTCGTGCTCATTTTTCAGATTGCCGATTGTTTTTTGGTCGACTCGGCCTTGAGTACTGT
rJMFF015N05+          CGTCGTGCTCATTTTTCAGATTGCCGATTGTTTTTTGGTCGACTCGGCCTTGAGTACTGT
rJMFF041L13+          CGTCGTGCTCATAATTCAGATTGCCGATTGTTTTTTGGTCGACTCGGCCTTGAGTACTGT
rJMFF050P03+          CGTCGTGCTCATTTTTCAGATTGCCGATTGTTTTTTGGTCGACTCGGCCTTGAGTACTGT
rJMSF008G20+          CGTCGTGCTCATTTTTCAGATTGCCGATTGTTTTTTGGTCGACTCGGCCTTGAGTACTGT
                      ____________________________________________________________
consensus             CGTCGTGCTCATTTTTCAGATTGCCGATTGTTTTTTGGTCGACTCGGCCTTGAGTACTGT
 
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rJMFF003G01+          GCAATAACTTTTGAGGTCGCGTGAGTTTTAAAATCGTTAACGAAGCAGCTTGTAAATGTG
rJMFF016B03+          GCAATAACTTTTGAGGTCGCGTGAGTTTTAAAATCGTTAACGAAGCAGCTTGTAAATGTG
rJMFF015N05+          GCAATAACTTTTGAGGTCGCGTGAGTTTTAAAATCGTTAACGAAGCAGCTTGTAAATGTG
rJMFF041L13+          GCAATAACTTTTGAGGTCGCGTGAGTTTTAAAATCGTTAACGAAGCAGCTTGTAAATGTG
rJMFF050P03+          GCAATAACTTTTGAGGTCGCGTGAGTTTTAAAATCGTTAACGAAGCAGCTTGTAAATGTG
rJMSF008G20+          GCAATAACTTTTGAGGTCGCGTGAGTTTTAAAATCGTTAACGAAGCAGCTTGTAAATGTG
                      ____________________________________________________________
consensus             GCAATAACTTTTGAGGTCGCGTGAGTTTTAAAATCGTTAACGAAGCAGCTTGTAAATGTG
 
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rJMFF003G01+          AGTTAAACAAGGAGATGGGAGTTTTTACAGCTTTTCCAGGTATAAATGGT          
rJMFF016B03+          AGTTAAACAAGGAGATGGGAGTTTTTACAGCTTTTCCAGGTATAAATGGTTT        
rJMFF015N05+          AGTTAAACAAGGAGATGGGAGTTTTTACAGCTTTTCCAGGTATAAATGGTTTA       
rJMFF041L13+          AGTTAAACAAGGAGATGGGAGTTTTTACAGCTTTTCCAGGTATAAATGGTTTAAACTCCT
rJMFF050P03+          AGTTAAACAAGGAGATGGGAGTTTTTACAGCTTTTCCAGGTATAAATGGTTTATACTCCT
rJMSF008G20+          AGTTAAACAAGGAGATGGGAGTTTTTACAGCTTTTCCAGGTATAAATGGTTTATACTCCT
                      ____________________________________________________________
consensus             AGTTAAACAAGGAGATGGGAGTTTTTACAGCTTTTCCAGGTATAAATGGTTTATACTCCT
 
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rJMFF041L13+          AATGTGATGATGATTTTGAG                                        
rJMFF050P03+          AATGTGATGATGATTTTGAG                                        
rJMSF008G20+          AATGTGATGATGATTTTGAGAAATCTTTGTGATGGTGAATATATATGATGGATGTGATAC
                      ____________________________________________________________
consensus             AATGTGATGATGATTTTGAGAAATCTTTGTGATGGTGAATATATATGATGGATGTGATAC