| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF017O14 | Sequence | 493 | 003906 (4) | ref|XP_006350582.1| | 5e-29 | PREDICTED: RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like [ | 798 | 008444 (4) | ref|XP_011084487.1| | 4e-118 | PREDICTED: RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like [ |
| JMSF008B18 | Sequence | 219 | 003906 (4) | ref|XP_004234179.1| | 2e-08 | PREDICTED: RNA polymerase sigma factor sigE, chloroplastic/mitochondrial isofor | 770 | 008444 (4) | ref|XP_011084487.1| | 8e-122 | PREDICTED: RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like [ |
| JMSF021C02 | Sequence | 676 | 003906 (4) | ref|XP_006350582.1| | 4e-42 | PREDICTED: RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like [ | 753 | 008444 (4) | ref|XP_006350582.1| | 1e-113 | PREDICTED: RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like [ |
| JMSF050J23 | Sequence | 615 | 003906 (4) | ref|XP_006350582.1| | 2e-36 | PREDICTED: RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like [ | 709 | 008444 (4) | ref|XP_006350582.1| | 3e-107 | PREDICTED: RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like [ |
This contig is upended
. : . : . : . : . : . :
rJMFF017O14+ ACGGTCCAAAGTTCCAAGACNTATGTCAAGCGGGC
rJMSF021C02+ TATGTCAAGCGGGC
rJMSF008B18+ TTTCAAGATTTGCAAACGGTCCAAAGTTCCAAGACCTATGTCAAGCGGGC
____________________________________________________________
consensus TTTCAAGATTTGCAAACGGTCCAAAGTTCCAAGACCTATGTCAAGCGGGC
. : . : . : . : . : . :
rJMSF050J23+ TATTACATCCATTGATCGATTTGAACCAAAAAGGAGGTTACAGCTCTCG
rJMFF017O14+ GTGAAGGGCCTTATTACATCCATTGATCGATTTGAACCAAAAAGGAGGTTACAGCTCTCG
rJMSF021C02+ GTGAAGGNCCTTATTACATCCATTGATCGATTTGAACCAAAAAGGAGGTTACAGCTCTCG
rJMSF008B18+ GTGAAGGGCCTTATTACATCCATTGATCGATTTGAACCAAAAAGGAGGTTACAGCTCTCG
____________________________________________________________
consensus GTGAAGGGCCTTATTACATCCATTGATCGATTTGAACCAAAAAGGAGGTTACAGCTCTCG
. : . : . : . : . : . :
rJMSF050J23+ ACATACGGTCTCTTTTGGATTAGACATGCAGTTATACGCTCCATAACTCTTTCGAGCTTC
rJMFF017O14+ ACATACGGTCTCTTTTGGATTAGACATGCAGTTATACGCTCCATAACTCTTTCGAGCTTC
rJMSF021C02+ ACATACGGTCTCTTTTGGATTAGACATGCAGTTATACGCTCCATAACTCTTTCGAGCTTC
rJMSF008B18+ ACATACGGTCTCTTTTGGATTAGACATGCAGTTATACGCTCCATAACTCTTTCGAGCTTC
____________________________________________________________
consensus ACATACGGTCTCTTTTGGATTAGACATGCAGTTATACGCTCCATAACTCTTTCGAGCTTC
. : . : . : . : . : . :
rJMSF050J23+ ATTAAAGTGTCCTTCGGGCTTGAGTCGGTAAGAGCTGAAATCCAGAGGGCGAGATTAGAA
rJMFF017O14+ ATTAAAGTGTCCTTCGGGCTTGAGTCGGTAAGAGCTGAAATCCAGAGGGCGAGATTAGAA
rJMSF021C02+ ATTAAAGTGTCCTTCGGGCTTGAGTCGGTAAGAGCTGAAATCCAGAGGGCGAGATTAGAA
rJMSF008B18+ ATTAAAGTGTCCTTCGGGCTTGAGTCGGTAAGAGCTGAAATCCAGAGGGCGAGATTAGAA
____________________________________________________________
consensus ATTAAAGTGTCCTTCGGGCTTGAGTCGGTAAGAGCTGAAATCCAGAGGGCGAGATTAGAA
. : . : . : . : . : . :
rJMSF050J23+ TTGTTGTTTGAGCTTCAGAGGATGCCAACAGATGAAGAGATAACGGGACGAGTAGGAATC
rJMFF017O14+ TTGTTGTTTGAACTTCAGAGGATCCCAACAGATGAAGAGATAACGGGACGAGTAGGAATC
rJMSF021C02+ TTGTTGTTTGAGCTTCAGAGGATGCCAACAGATGAAGAGATAACGGGACGAGTAGGAATC
rJMSF008B18+ TTGTTGTTTGAGCTTCAGAGGATGCCAACAGATGAAGAGATAACGGGACGAGTAGGAATC
____________________________________________________________
consensus TTGTTGTTTGAGCTTCAGAGGATGCCAACAGATGAAGAGATAACGGGACGAGTAGGAATC
. : . : . : . : . : . :
rJMSF050J23+ TCCACTGACAGATACCACGAAGTGATGAAAGCATCGAAACCCGTTTCCTCTCTCCATGCA
rJMFF017O14+ TCCACTGACAGATACCACGAAGTGATGAAAGCATCGAAACCCGTTTCCTCTCTCCATGCA
rJMSF021C02+ TCCACTGACAGATACCACGAAGTGATGAAAGCATCGAAACCCGTTTCCTCTCTCCATGCA
rJMSF008B18+ TCCACTGACAGATACCACGAAGTGATGAAAGCATCGAAACCCGTTTCCTCTCTCCATGCA
____________________________________________________________
consensus TCCACTGACAGATACCACGAAGTGATGAAAGCATCGAAACCCGTTTCCTCTCTCCATGCA
. : . : . : . : . : . :
rJMSF050J23+ AGGAACCGCGTGACACAAGAGGAGCTTATCAATGGAATTACTGATCTCGATGGTGTTGAA
rJMFF017O14+ AGGAACCGCGTGACACAAGAGGAGCTTATCAATGGAATTACTGATCTCGATGGTGTTGAA
rJMSF021C02+ AGGAACCGCGTGACACAAGAGGAGCTTATCAATGGAATTACTGATCTCGATGGTGTTGAA
rJMSF008B18+ AGGAACCGCGTGACACAAGAGGAGCTTATCAATGGAATTACTGATCTCGATGGTGTTGAA
____________________________________________________________
consensus AGGAACCGCGTGACACAAGAGGAGCTTATCAATGGAATTACTGATCTCGATGGTGTTGAA
. : . : . : . : . : . :
rJMSF050J23+ GGCGATAAGAGGCAGCAACCCGCTCTTCTAAGGCTTGCTCTTGACGATGTGCTTGATTCT
rJMFF017O14+ GGCGATAAGAGGCAGCAACCCGCTCTTCTAAGGCTTGCTCTTGACGATGTGCTTGATTCN
rJMSF021C02+ GGCGATAAGAGGCAGCAACCCGCTCTTCTAAGGCTTGCTCTTGACGATGTGCTTGATTCT
rJMSF008B18+ GGCGATAAGAGGCAGCAACCCGCTCTTCTAAGGCTTGCTCTTGACGATGTGCTTGATTCT
____________________________________________________________
consensus GGCGATAAGAGGCAGCAACCCGCTCTTCTAAGGCTTGCTCTTGACGATGTGCTTGATTCT
. : . : . : . : . : . :
rJMSF050J23+ CTGAAACCGAAAGAAAGCCTGGTGATCAGACAGAGATATGGGCTCGATGGCAAAGGCGAT
rJMFF017O14+ NTGAAACCGAAAGAAAGCCTGGTGATCAGACAGAGATATGGGCTCGATGGCAAAGGCGAT
rJMSF021C02+ CTGAAACCGAAAGAAAGCCTGGTGATCAGACAGAGATATGGGCTCGATGGCAAAGGCGAT
rJMSF008B18+ CTGAAACCGAAAGAAAGCCTGGTGATCAGACAGAGATATGGGCTCGATGGCAAAGGCGAT
____________________________________________________________
consensus CTGAAACCGAAAGAAAGCCTGGTGATCAGACAGAGATATGGGCTCGATGGCAAAGGCGAT
. : . : . : . : . : . :
rJMSF050J23+ AGGACACTGGGAGAAATTGCGGGAAATCTAAACATTTCGAGAGAGATGGTGAGGAAACAC
rJMFF017O14+ AGGACACTGGGAGAAATTGCGGGAAATCTAAACATTTCGAGAGAGATGGTGAGGAAACAC
rJMSF021C02+ AGGACACTGGGAGAAATTGCGGGAAATCTAAACATTTCGAGAGAGATGGTGAGGAAACAC
rJMSF008B18+ AGGACACTGGGAGAAATTGCGGGAAATCTAAACATTTCGAGAGAGATGGTGAGGAAACAC
____________________________________________________________
consensus AGGACACTGGGAGAAATTGCGGGAAATCTAAACATTTCGAGAGAGATGGTGAGGAAACAC
. : . : . : . : . : . :
rJMSF050J23+ GAGGTGAAGGCTCTCATGAAGCTCAAGCATCCAGCCCGAGTGGATTATCTTCGCAGATAC
rJMFF017O14+ GAGGTGAAGGCTCTCATGAAGCTCAAGCATCCAGCCCGAGTGGATTATCTTCGCAGATAC
rJMSF021C02+ GAGGTGAAGGCTCTCATGAAGCTCAAGCATCCAGCCCGAGTGGATTATCTTCGCAGATAC
rJMSF008B18+ GAGGTGAAGGCTCTCATGAAGCTCAAGCATCCAGCCCGAGTGGATTATCTTCGCAGATAC
____________________________________________________________
consensus GAGGTGAAGGCTCTCATGAAGCTCAAGCATCCAGCCCGAGTGGATTATCTTCGCAGATAC
. : . : . : . : . : . :
rJMSF050J23+ ATTTTCTAAGGACACCAACGCCCTTGATCAGCTCGAGCCATCACAAGAACAGCGCTTCCG
rJMFF017O14+ ATTTTCTAA
rJMSF021C02+ ATTTTCTAA
rJMSF008B18+ ATTTTCTAAGGACACCAACGCCCTTGATCAGCTCGAGCCATCACAAGAACAGCGCTTCCG
____________________________________________________________
consensus ATTTTCTAAGGACACCAACGCCCTTGATCAGCTCGAGCCATCACAAGAACAGCGCTTCCG
. : . : . : . : . : . :
rJMSF050J23+ ATATGTGTTTGGTGTCGCGATTATACACTTATACTAATCATTTGTATCATAATCACATAC
rJMSF008B18+ ATATGTGTTTGGTGTCGCGATTATACACTTATACTAATCATTTGTATCATAATCACATAC
____________________________________________________________
consensus ATATGTGTTTGGTGTCGCGATTATACACTTATACTAATCATTTGTATCATAATCACATAC