Contig 008441:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF007P04Sequence282009257 (3)ref|XP_009589968.1|1e-13PREDICTED: auxin response factor 3 [Nicotiana tomentosiformis]758008441 (3)ref|XP_009589968.1|2e-15PREDICTED: auxin response factor 3 [Nicotiana tomentosiformis]
JMSF009D21Sequence355009257 (3)ref|XP_009589968.1|1e-27PREDICTED: auxin response factor 3 [Nicotiana tomentosiformis]733008441 (3)ref|XP_009589968.1|4e-13PREDICTED: auxin response factor 3 [Nicotiana tomentosiformis]
JMSF013L07Sequence495009257 (3)ref|XP_009589968.1|1e-08PREDICTED: auxin response factor 3 [Nicotiana tomentosiformis]731008441 (3)ref|XP_009589968.1|8e-17PREDICTED: auxin response factor 3 [Nicotiana tomentosiformis]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF013L07+ TTTTGATAG
                      ____________________________________________________________
consensus TTTTGATAG
 
. : . : . : . : . : . :
rJMSF013L07+ TTCCGGGGTTTNTACAAGAGGCAGAAACGNTAGAGCTCTGCTCGGAGACTACGCTGGTAA
rJMSF009D21+ GAGACTACGCTGGTAA
rJMSF007P04+ CAGAAACGTTAGAGCTCTGCTCGGAGACTACGCTGGTAA
                      ____________________________________________________________
consensus TTCCGGGGTTTNTACAAGAGGCAGAAACGTTAGAGCTCTGCTCGGAGACTACGCTGGTAA
 
. : . : . : . : . : . :
rJMSF013L07+ ATCAAAAGAAAGCATTGGCTTTGCTGAATCTTGCCGGTTCAATAAGGTCTTGCAAGGTCA
rJMSF009D21+ ATCAAAAGAAAGCATTGGCTTTGCTGAATCTTGCCGGTTCAATAAGGTCTTGCAAGGTCA
rJMSF007P04+ ATCAAAAGAAAGCATTGGCTTTGCTGAATCTTGCCGGTTCAATAAGGTCTTGCAAGGTCA
                      ____________________________________________________________
consensus ATCAAAAGAAAGCATTGGCTTTGCTGAATCTTGCCGGTTCAATAAGGTCTTGCAAGGTCA
 
. : . : . : . : . : . :
rJMSF013L07+ AGAAACATATCTTAATAGCCCACCATACAGGAGAGGCGGCATTGCCACCAACCATTTGCA
rJMSF009D21+ AGAAACATATCTTAATAGCCCACCATACAGGAGAGGCGGCATTGCCACCAACCATTTGCA
rJMSF007P04+ AGAAACATATCTTAATAGCCCACCATACAGGAGAGGCGGCATTGCCACCAACCATTTGCA
                      ____________________________________________________________
consensus AGAAACATATCTTAATAGCCCACCATACAGGAGAGGCGGCATTGCCACCAACCATTTGCA
 
. : . : . : . : . : . :
rJMSF013L07+ GCAACCCCATCGGTCCGGGATCATTATTGGAATTCAAGTGCCAAGCCACTCAACTAGATG
rJMSF009D21+ GCAACCCCATCGGTCCGGGATCATTGTTGGAATTCAAGTGCCAAGCCACTCAACTAGATG
rJMSF007P04+ GCAACCCCATCGGTCCGGGATCATTGTTGGAATTCAAGTGCCAAGCCACTCAACTAGATG
                      ____________________________________________________________
consensus GCAACCCCATCGGTCCGGGATCATTGTTGGAATTCAAGTGCCAAGCCACTCAACTAGATG
 
. : . : . : . : . : . :
rJMSF013L07+ GTCGTCTACACCGATCCCCAATCACCACCCTCCAATGCAGCAGCAGCAGCCATCTTCCCC
rJMSF009D21+ GTCGTCTACACCGATCCCCAATCACCACCCTCCAATGCAGCAGCAGCAGCCATCTTCCCC
rJMSF007P04+ GTCGTCTACACCGATCCCCAATCACCACCCTCCAATGCAGCAGCAGCAGCCATCTTCCCC
                      ____________________________________________________________
consensus GTCGTCTACACCGATCCCCAATCACCACCCTCCAATGCAGCAGCAGCAGCCATCTTCCCC
 
. : . : . : . : . : . :
rJMSF013L07+ CCTCGTTTCCCCCCCTTCTGTGCTAATGTTTCAGCAAGCAACCTCTCCTGCTCCCGCAAC
rJMSF009D21+ CCTCGTTTCCCCCCCTTCTGTGCTAATGTTTCAGCAAGCAACCTCTCCTGCTCCCGCAAC
rJMSF007P04+ CCTCGTTTCCCCCCCTTCTGTGCTAATGTTTCAGCAAGCAACCTCTCCTGCTCCCGCAAC
                      ____________________________________________________________
consensus CCTCGTTTCCCCCCCTTCTGTGCTAATGTTTCAGCAAGCAACCTCTCCTGCTCCCGCAAC
 
. : . : . : . : . : . :
rJMSF013L07+ ATTTCATAAGCAATCTGGGTTTTCACACCTTCTCGGCCCCCAATCCTCCTGCAGAATCTT
rJMSF009D21+ ATTTCATAAGCAATCTGGGTTTTCACACCTTCTCGG-CCCCAATCCTCCTGCAGAATCTT
rJMSF007P04+ ATTTCATAAGCAATCTGGGTTTTCACACCTTCTCGG-CCCCAATCCTCCTGCAGAATCTT
                      ____________________________________________________________
consensus ATTTCATAAGCAATCTGGGTTTTCACACCTTCTCGG-CCCCAATCCTCCTGCAGAATCTT
 
. : . : . : . : . : . :
rJMSF013L07+ CGGGTTTCCCTTATCCGAGGGAAGAAGAAGCGCTGCCTCAGGTGAAGAACGCGATTCCTC
rJMSF009D21+ CGGGTTTCCCTTATCCGAGGGAAGAAGAAGCGCTGCCTCAGGTGAAGAACGCGATTCCTC
rJMSF007P04+ CGGGTTTCCCTTATCCGAGGGAAGAAGAAGCGCTGCCTCAGGTGAAGAACGCGATTCCTC
                      ____________________________________________________________
consensus CGGGTTTCCCTTATCCGAGGGAAGAAGAAGCGCTGCCTCAGGTGAAGAACGCGATTCCTC
 
. : . : . : . : . : . :
rJMSF013L07+ CCACGGTGAAACCACCAGTACTACTCCTCTCAGTGGCAACGAGGCCCGGGTTCTCTTAAA
rJMSF009D21+ CCACGGTGAAACCACCAGTACTACTCCTCTCAGTGGCAACGAGGCCCGGGTTCTCTTAAA
rJMSF007P04+ CCACGGTGAAACCACCAGTACTACTCCTCTCAGTGGCAACGAGGCCCGGGTTCTCTTAAA
                      ____________________________________________________________
consensus CCACGGTGAAACCACCAGTACTACTCCTCTCAGTGGCAACGAGGCCCGGGTTCTCTTAAA
 
. : . : . : . : . : . :
rJMSF013L07+ GCCTCAAGCCATTCCTAGTGCCATGGGAAGCAGCTATCCCAAAGCCTCAAGAGAAGTACT
rJMSF009D21+ GCCTCAAGCCATTCCTAGTGCCATGGGAAGCAGCTATCCCAAAGCCTCAAGAGAAGTACT
rJMSF007P04+ GCCTCAAGCCATTCCTAGTGCCATGGGAAGCAGCTATCCCAAAGCCTCAAGAGAAGTACT
                      ____________________________________________________________
consensus GCCTCAAGCCATTCCTAGTGCCATGGGAAGCAGCTATCCCAAAGCCTCAAGAGAAGTACT
 
. : . : . : . : . : . :
rJMSF013L07+ TCTTGATATAGCACTGTAAGGATTGGATTAATCTCTTCCAGAAAATGGAGCAGATCAGTC
rJMSF009D21+ TCTTGATATAGCACTGTAAGGATTGGATTAATCTCTTCCAGAAAATGGAGCAGATCAGTC
rJMSF007P04+ TCTTGATATAGCACTGTAAGGATTGGATTAATCTCTTCCAGAAAATGGAGCAGATCAGTC
                      ____________________________________________________________
consensus TCTTGATATAGCACTGTAAGGATTGGATTAATCTCTTCCAGAAAATGGAGCAGATCAGTC
 
. : . : . : . : . : . :
rJMSF013L07+ TAACTTCGTTCAAATCAAGAACTGATTCTTAGCTTCACATTTTTTGTTGCCTGTAATAT
rJMSF009D21+ TAACTTCGTTCAAATCAAGAACTGATTCTTAGCTTCACATTTTTTGTTGCCTGTAATATT
rJMSF007P04+ TAACTTCGTTCAAATCAAGAACTGATTCTTAGCTTCACATTTTTTGTTGCCTGTAATATT
                      ____________________________________________________________
consensus TAACTTCGTTCAAATCAAGAACTGATTCTTAGCTTCACATTTTTTGTTGCCTGTAATATT
 
. : . : . : . : . : . :
rJMSF009D21+ GCAATCTACATTTAATTAGCAAGGAGTGATTTATTTCTGTCAATTGTTCTATAATCTC
rJMSF007P04+ GCAATCTACATTTAATTAGCAAGGAGTGATTTATTTCTGTCAATTGTTCTATAATCTCTC
                      ____________________________________________________________
consensus GCAATCTACATTTAATTAGCAAGGAGTGATTTATTTCTGTCAATTGTTCTATAATCTCTC