clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMSF007P04 | Sequence | 282 | 009257 (3) | ref|XP_009589968.1| | 1e-13 | PREDICTED: auxin response factor 3 [Nicotiana tomentosiformis] | 758 | 008441 (3) | ref|XP_009589968.1| | 2e-15 | PREDICTED: auxin response factor 3 [Nicotiana tomentosiformis] |
JMSF009D21 | Sequence | 355 | 009257 (3) | ref|XP_009589968.1| | 1e-27 | PREDICTED: auxin response factor 3 [Nicotiana tomentosiformis] | 733 | 008441 (3) | ref|XP_009589968.1| | 4e-13 | PREDICTED: auxin response factor 3 [Nicotiana tomentosiformis] |
JMSF013L07 | Sequence | 495 | 009257 (3) | ref|XP_009589968.1| | 1e-08 | PREDICTED: auxin response factor 3 [Nicotiana tomentosiformis] | 731 | 008441 (3) | ref|XP_009589968.1| | 8e-17 | PREDICTED: auxin response factor 3 [Nicotiana tomentosiformis] |
This contig is upended
. : . : . : . : . : . :
rJMSF013L07+ TTTTGATAG
____________________________________________________________
consensus TTTTGATAG
. : . : . : . : . : . :
rJMSF013L07+ TTCCGGGGTTTNTACAAGAGGCAGAAACGNTAGAGCTCTGCTCGGAGACTACGCTGGTAA
rJMSF009D21+ GAGACTACGCTGGTAA
rJMSF007P04+ CAGAAACGTTAGAGCTCTGCTCGGAGACTACGCTGGTAA
____________________________________________________________
consensus TTCCGGGGTTTNTACAAGAGGCAGAAACGTTAGAGCTCTGCTCGGAGACTACGCTGGTAA
. : . : . : . : . : . :
rJMSF013L07+ ATCAAAAGAAAGCATTGGCTTTGCTGAATCTTGCCGGTTCAATAAGGTCTTGCAAGGTCA
rJMSF009D21+ ATCAAAAGAAAGCATTGGCTTTGCTGAATCTTGCCGGTTCAATAAGGTCTTGCAAGGTCA
rJMSF007P04+ ATCAAAAGAAAGCATTGGCTTTGCTGAATCTTGCCGGTTCAATAAGGTCTTGCAAGGTCA
____________________________________________________________
consensus ATCAAAAGAAAGCATTGGCTTTGCTGAATCTTGCCGGTTCAATAAGGTCTTGCAAGGTCA
. : . : . : . : . : . :
rJMSF013L07+ AGAAACATATCTTAATAGCCCACCATACAGGAGAGGCGGCATTGCCACCAACCATTTGCA
rJMSF009D21+ AGAAACATATCTTAATAGCCCACCATACAGGAGAGGCGGCATTGCCACCAACCATTTGCA
rJMSF007P04+ AGAAACATATCTTAATAGCCCACCATACAGGAGAGGCGGCATTGCCACCAACCATTTGCA
____________________________________________________________
consensus AGAAACATATCTTAATAGCCCACCATACAGGAGAGGCGGCATTGCCACCAACCATTTGCA
. : . : . : . : . : . :
rJMSF013L07+ GCAACCCCATCGGTCCGGGATCATTATTGGAATTCAAGTGCCAAGCCACTCAACTAGATG
rJMSF009D21+ GCAACCCCATCGGTCCGGGATCATTGTTGGAATTCAAGTGCCAAGCCACTCAACTAGATG
rJMSF007P04+ GCAACCCCATCGGTCCGGGATCATTGTTGGAATTCAAGTGCCAAGCCACTCAACTAGATG
____________________________________________________________
consensus GCAACCCCATCGGTCCGGGATCATTGTTGGAATTCAAGTGCCAAGCCACTCAACTAGATG
. : . : . : . : . : . :
rJMSF013L07+ GTCGTCTACACCGATCCCCAATCACCACCCTCCAATGCAGCAGCAGCAGCCATCTTCCCC
rJMSF009D21+ GTCGTCTACACCGATCCCCAATCACCACCCTCCAATGCAGCAGCAGCAGCCATCTTCCCC
rJMSF007P04+ GTCGTCTACACCGATCCCCAATCACCACCCTCCAATGCAGCAGCAGCAGCCATCTTCCCC
____________________________________________________________
consensus GTCGTCTACACCGATCCCCAATCACCACCCTCCAATGCAGCAGCAGCAGCCATCTTCCCC
. : . : . : . : . : . :
rJMSF013L07+ CCTCGTTTCCCCCCCTTCTGTGCTAATGTTTCAGCAAGCAACCTCTCCTGCTCCCGCAAC
rJMSF009D21+ CCTCGTTTCCCCCCCTTCTGTGCTAATGTTTCAGCAAGCAACCTCTCCTGCTCCCGCAAC
rJMSF007P04+ CCTCGTTTCCCCCCCTTCTGTGCTAATGTTTCAGCAAGCAACCTCTCCTGCTCCCGCAAC
____________________________________________________________
consensus CCTCGTTTCCCCCCCTTCTGTGCTAATGTTTCAGCAAGCAACCTCTCCTGCTCCCGCAAC
. : . : . : . : . : . :
rJMSF013L07+ ATTTCATAAGCAATCTGGGTTTTCACACCTTCTCGGCCCCCAATCCTCCTGCAGAATCTT
rJMSF009D21+ ATTTCATAAGCAATCTGGGTTTTCACACCTTCTCGG-CCCCAATCCTCCTGCAGAATCTT
rJMSF007P04+ ATTTCATAAGCAATCTGGGTTTTCACACCTTCTCGG-CCCCAATCCTCCTGCAGAATCTT
____________________________________________________________
consensus ATTTCATAAGCAATCTGGGTTTTCACACCTTCTCGG-CCCCAATCCTCCTGCAGAATCTT
. : . : . : . : . : . :
rJMSF013L07+ CGGGTTTCCCTTATCCGAGGGAAGAAGAAGCGCTGCCTCAGGTGAAGAACGCGATTCCTC
rJMSF009D21+ CGGGTTTCCCTTATCCGAGGGAAGAAGAAGCGCTGCCTCAGGTGAAGAACGCGATTCCTC
rJMSF007P04+ CGGGTTTCCCTTATCCGAGGGAAGAAGAAGCGCTGCCTCAGGTGAAGAACGCGATTCCTC
____________________________________________________________
consensus CGGGTTTCCCTTATCCGAGGGAAGAAGAAGCGCTGCCTCAGGTGAAGAACGCGATTCCTC
. : . : . : . : . : . :
rJMSF013L07+ CCACGGTGAAACCACCAGTACTACTCCTCTCAGTGGCAACGAGGCCCGGGTTCTCTTAAA
rJMSF009D21+ CCACGGTGAAACCACCAGTACTACTCCTCTCAGTGGCAACGAGGCCCGGGTTCTCTTAAA
rJMSF007P04+ CCACGGTGAAACCACCAGTACTACTCCTCTCAGTGGCAACGAGGCCCGGGTTCTCTTAAA
____________________________________________________________
consensus CCACGGTGAAACCACCAGTACTACTCCTCTCAGTGGCAACGAGGCCCGGGTTCTCTTAAA
. : . : . : . : . : . :
rJMSF013L07+ GCCTCAAGCCATTCCTAGTGCCATGGGAAGCAGCTATCCCAAAGCCTCAAGAGAAGTACT
rJMSF009D21+ GCCTCAAGCCATTCCTAGTGCCATGGGAAGCAGCTATCCCAAAGCCTCAAGAGAAGTACT
rJMSF007P04+ GCCTCAAGCCATTCCTAGTGCCATGGGAAGCAGCTATCCCAAAGCCTCAAGAGAAGTACT
____________________________________________________________
consensus GCCTCAAGCCATTCCTAGTGCCATGGGAAGCAGCTATCCCAAAGCCTCAAGAGAAGTACT
. : . : . : . : . : . :
rJMSF013L07+ TCTTGATATAGCACTGTAAGGATTGGATTAATCTCTTCCAGAAAATGGAGCAGATCAGTC
rJMSF009D21+ TCTTGATATAGCACTGTAAGGATTGGATTAATCTCTTCCAGAAAATGGAGCAGATCAGTC
rJMSF007P04+ TCTTGATATAGCACTGTAAGGATTGGATTAATCTCTTCCAGAAAATGGAGCAGATCAGTC
____________________________________________________________
consensus TCTTGATATAGCACTGTAAGGATTGGATTAATCTCTTCCAGAAAATGGAGCAGATCAGTC
. : . : . : . : . : . :
rJMSF013L07+ TAACTTCGTTCAAATCAAGAACTGATTCTTAGCTTCACATTTTTTGTTGCCTGTAATAT
rJMSF009D21+ TAACTTCGTTCAAATCAAGAACTGATTCTTAGCTTCACATTTTTTGTTGCCTGTAATATT
rJMSF007P04+ TAACTTCGTTCAAATCAAGAACTGATTCTTAGCTTCACATTTTTTGTTGCCTGTAATATT
____________________________________________________________
consensus TAACTTCGTTCAAATCAAGAACTGATTCTTAGCTTCACATTTTTTGTTGCCTGTAATATT
. : . : . : . : . : . :
rJMSF009D21+ GCAATCTACATTTAATTAGCAAGGAGTGATTTATTTCTGTCAATTGTTCTATAATCTC
rJMSF007P04+ GCAATCTACATTTAATTAGCAAGGAGTGATTTATTTCTGTCAATTGTTCTATAATCTCTC
____________________________________________________________
consensus GCAATCTACATTTAATTAGCAAGGAGTGATTTATTTCTGTCAATTGTTCTATAATCTCTC